Wall clock time and date at job start Tue Mar 31 2020 23:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00110 * 2 1 4 4 H 1.48508 * 109.46856 * 269.99608 * 3 2 1 5 5 H 1.48497 * 109.47014 * 29.99443 * 3 2 1 6 6 H 1.48492 * 109.47319 * 150.00022 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99533 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99969 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46870 * 184.53248 * 9 7 2 11 11 C 1.46902 * 111.00212 * 193.09520 * 10 9 7 12 12 C 1.50701 * 109.47113 * 66.04315 * 11 10 9 13 13 C 1.38678 * 120.42245 * 269.72817 * 12 11 10 14 14 C 1.38624 * 118.41909 * 179.78238 * 13 12 11 15 15 C 1.38227 * 119.16192 * 0.50984 * 14 13 12 16 16 N 1.31851 * 120.76444 * 359.72692 * 15 14 13 17 17 C 1.31890 * 121.72515 * 359.97438 * 16 15 14 18 18 C 1.39233 * 111.00204 * 69.14184 * 10 9 7 19 19 N 1.32633 * 119.92416 * 58.69158 * 18 10 9 20 20 C 1.32061 * 121.95390 * 180.02562 * 19 18 10 21 21 C 1.38087 * 121.15278 * 359.97438 * 20 19 18 22 22 C 1.38964 * 118.90632 * 0.02562 * 21 20 19 23 23 C 1.39031 * 119.92855 * 238.42469 * 18 10 9 24 24 N 1.40301 * 121.50049 * 0.64634 * 23 18 10 25 25 C 1.35161 * 118.76665 * 194.68873 * 24 23 18 26 26 O 1.21312 * 120.09633 * 181.83316 * 25 24 23 27 27 C 1.50741 * 119.80704 * 1.85444 * 25 24 23 28 28 O 1.35521 * 121.58016 * 180.02562 * 22 21 20 29 29 H 0.96997 * 119.99536 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47457 * 64.53225 * 9 7 2 31 31 H 1.09001 * 109.46984 * 304.53028 * 9 7 2 32 32 H 1.09006 * 109.47013 * 306.04943 * 11 10 9 33 33 H 1.08999 * 109.47467 * 186.04606 * 11 10 9 34 34 H 1.07997 * 120.78363 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.41419 * 180.21879 * 14 13 12 36 36 H 1.08000 * 119.61368 * 179.75136 * 15 14 13 37 37 H 1.07993 * 119.61235 * 179.97438 * 17 16 15 38 38 H 1.07997 * 119.42240 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.54761 * 179.97438 * 21 20 19 40 40 H 0.97002 * 120.64510 * 14.44753 * 24 23 18 41 41 H 1.09004 * 109.42224 * 208.62050 * 27 25 24 42 42 H 1.09009 * 109.41957 * 88.80017 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5747 -0.1078 11 6 5.4360 -2.6502 0.1984 12 6 5.6591 -2.3040 1.6481 13 6 5.8921 -0.9910 2.0286 14 6 6.0874 -0.7187 3.3738 15 6 6.0543 -1.7591 4.2833 16 7 5.8349 -2.9966 3.8847 17 6 5.6391 -3.2917 2.6143 18 6 3.7317 -3.1018 -1.3680 19 7 4.2113 -2.5052 -2.4512 20 6 3.9801 -2.9701 -3.6654 21 6 3.2228 -4.1078 -3.8626 22 6 2.6995 -4.7664 -2.7565 23 6 2.9650 -4.2554 -1.4879 24 7 2.4371 -4.9051 -0.3621 25 6 1.9641 -6.1637 -0.4996 26 8 1.4720 -6.7358 0.4503 27 6 2.0503 -6.8547 -1.8365 28 8 1.9495 -5.8875 -2.8873 29 1 -0.4849 0.8401 -0.0004 30 1 3.8746 -0.7519 0.9289 31 1 3.8752 -0.6117 -0.8455 32 1 5.9795 -1.9456 -0.4311 33 1 5.7958 -3.6611 0.0068 34 1 5.9168 -0.1989 1.2949 35 1 6.2678 0.2929 3.7063 36 1 6.2095 -1.5558 5.3326 37 1 5.4628 -4.3173 2.3256 38 1 4.3906 -2.4514 -4.5192 39 1 3.0396 -4.4791 -4.8600 40 1 2.4150 -4.4609 0.5000 41 1 1.2352 -7.5729 -1.9265 42 1 3.0035 -7.3779 -1.9133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164006480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:43 Heat of formation + Delta-G solvation = 5.473162 kcal Electronic energy + Delta-G solvation = -29869.620107 eV Core-core repulsion = 25814.830664 eV Total energy + Delta-G solvation = -4054.789443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.71793 -41.26015 -40.53773 -39.41804 -37.79019 -36.30854 -34.80814 -33.67900 -32.71288 -32.21291 -30.84221 -29.62549 -29.02480 -26.70156 -25.36134 -24.71795 -24.20870 -23.29560 -22.19824 -20.94737 -19.84103 -19.40056 -18.92808 -18.20949 -17.97384 -17.53454 -17.35724 -17.04272 -16.65078 -16.39503 -16.16510 -15.92917 -15.86502 -15.43376 -15.25275 -14.75956 -14.68316 -14.48032 -14.32318 -14.11661 -14.03498 -13.91612 -13.53556 -13.12528 -12.82707 -12.66854 -12.56905 -12.20250 -12.16709 -11.89653 -11.61772 -11.44547 -10.87410 -10.75186 -10.67882 -10.41517 -10.05111 -9.92083 -9.50488 -9.11992 -8.31514 -6.34680 -0.10297 0.05848 0.20705 0.34232 1.23279 1.30450 1.31661 1.41432 1.66344 2.19629 2.30246 2.54600 2.71635 2.94080 3.04285 3.09684 3.52266 3.54685 3.73382 3.84699 3.88094 3.98906 4.03719 4.09909 4.14337 4.15396 4.38660 4.45130 4.55573 4.61959 4.71859 4.77013 4.81414 4.86916 5.00408 5.18551 5.32076 5.35594 5.36356 5.46549 5.72241 5.73949 5.79049 6.02797 6.36990 6.41189 6.65892 6.70910 6.99250 7.03020 7.28131 8.84980 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.005361 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.786613 B = 5221.239697 C = 6707.748082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.511 4.511 8 H 0.033 0.967 9 C 0.180 3.820 10 N -0.487 5.487 11 C 0.111 3.889 12 C -0.131 4.131 13 C -0.076 4.076 14 C -0.171 4.171 15 C 0.088 3.912 16 N -0.511 5.511 17 C 0.105 3.895 18 C 0.310 3.690 19 N -0.521 5.521 20 C 0.118 3.882 21 C -0.162 4.162 22 C 0.114 3.886 23 C 0.047 3.953 24 N -0.641 5.641 25 C 0.479 3.521 26 O -0.555 6.555 27 C 0.057 3.943 28 O -0.298 6.298 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.005 0.995 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.201 0.799 39 H 0.187 0.813 40 H 0.417 0.583 41 H 0.173 0.827 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.934 -7.412 -5.921 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.055 3.945 10 N -0.211 5.211 11 C -0.016 4.016 12 C -0.133 4.133 13 C -0.102 4.102 14 C -0.190 4.190 15 C -0.069 4.069 16 N -0.220 5.220 17 C -0.051 4.051 18 C 0.081 3.919 19 N -0.235 5.235 20 C -0.042 4.042 21 C -0.182 4.182 22 C 0.058 3.942 23 C -0.053 4.053 24 N -0.287 5.287 25 C 0.267 3.733 26 O -0.433 6.433 27 C -0.020 4.020 28 O -0.211 6.211 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.174 0.826 38 H 0.218 0.782 39 H 0.204 0.796 40 H 0.257 0.743 41 H 0.190 0.810 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.596 -8.033 -4.587 17.280 hybrid contribution -0.633 1.618 -0.348 1.772 sum 13.963 -6.415 -4.935 16.139 Atomic orbital electron populations 1.70058 1.08201 1.27938 1.52520 1.25765 0.95467 1.02971 0.94396 0.85826 0.79873 0.78908 0.79087 1.19515 1.21105 1.16353 1.21134 0.90892 0.93026 1.49920 0.94857 1.20032 0.94012 0.84134 0.96333 1.60000 1.15796 1.23643 1.21628 1.20903 0.86711 1.02504 0.91481 1.20719 1.01119 0.94814 0.96676 1.21777 0.94826 0.96151 0.97472 1.22426 1.01175 1.02227 0.93205 1.23247 0.94590 0.87518 1.01538 1.67699 1.12637 1.23296 1.18318 1.22691 0.94711 0.99949 0.87777 1.19145 0.93412 0.90117 0.89271 1.67809 1.24010 1.31782 0.99917 1.23102 0.94348 0.92526 0.94199 1.21907 0.99076 0.97955 0.99265 1.18990 0.94060 0.89547 0.91556 1.18744 1.01805 0.97462 0.87244 1.43714 1.58315 1.14687 1.11977 1.22298 0.76632 0.81448 0.92908 1.90776 1.44507 1.65054 1.42997 1.23544 1.09643 0.89759 0.79023 1.86152 1.62302 1.27380 1.45273 0.92611 0.93964 0.97748 0.92272 0.88995 0.84671 0.82052 0.80111 0.82557 0.78233 0.79617 0.74349 0.81005 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 2 C 0.01 0.66 5.47 84.65 0.46 1.13 16 3 Si 0.94 43.21 27.38 68.60 1.88 45.09 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.24 -9.89 6.67 99.48 0.66 -9.22 16 7 C -0.51 -28.73 9.31 25.60 0.24 -28.49 16 8 H 0.03 2.11 8.04 -2.91 -0.02 2.09 16 9 C 0.18 8.16 3.56 85.56 0.30 8.46 16 10 N -0.49 -18.63 3.82 -710.16 -2.71 -21.35 16 11 C 0.11 3.38 4.96 85.56 0.42 3.80 16 12 C -0.13 -3.96 4.92 -19.77 -0.10 -4.06 16 13 C -0.08 -2.16 8.03 22.47 0.18 -1.98 16 14 C -0.17 -4.19 10.11 22.36 0.23 -3.96 16 15 C 0.09 2.24 11.18 84.69 0.95 3.18 16 16 N -0.51 -15.59 10.36 -195.85 -2.03 -17.62 16 17 C 0.11 3.19 10.86 84.67 0.92 4.11 16 18 C 0.31 11.40 4.70 132.89 0.62 12.02 16 19 N -0.52 -17.47 9.55 -192.90 -1.84 -19.31 16 20 C 0.12 2.91 11.17 84.62 0.94 3.86 16 21 C -0.16 -3.67 10.10 22.41 0.23 -3.45 16 22 C 0.11 3.26 6.48 22.70 0.15 3.41 16 23 C 0.05 1.65 6.57 38.23 0.25 1.90 16 24 N -0.64 -23.17 5.44 -302.20 -1.65 -24.82 16 25 C 0.48 15.41 7.94 87.61 0.70 16.10 16 26 O -0.56 -21.35 17.95 -3.13 -0.06 -21.41 16 27 C 0.06 1.20 7.17 71.25 0.51 1.71 16 28 O -0.30 -7.52 10.47 -88.24 -0.92 -8.44 16 29 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.04 1.89 4.71 -2.39 -0.01 1.88 16 31 H 0.00 0.22 6.75 -2.39 -0.02 0.20 16 32 H 0.06 1.76 8.07 -2.38 -0.02 1.75 16 33 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 34 H 0.14 3.69 7.84 -2.91 -0.02 3.67 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.42 16.95 8.36 -92.71 -0.78 16.17 16 41 H 0.17 2.66 8.14 -2.38 -0.02 2.64 16 42 H 0.14 1.89 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -78.42 359.01 0.24 -78.18 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.26 Total: 30.89 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 7.01 Total: 17.76 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -7.93 Total: -142.06 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.98 Total: -29.85 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -78.42 0.24 -78.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.655 kcal (2) G-P(sol) polarization free energy of solvation -78.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds