Wall clock time and date at job start Tue Mar 31 2020 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99348 * 2 1 4 4 H 1.48500 * 109.46722 * 269.99814 * 3 2 1 5 5 H 1.48503 * 109.47095 * 29.99784 * 3 2 1 6 6 H 1.48503 * 109.47042 * 149.99989 * 3 2 1 7 7 C 1.37866 * 120.00714 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00060 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00214 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99865 * 90.00041 * 10 9 7 12 12 C 1.50700 * 109.47380 * 90.00376 * 11 10 9 13 13 C 1.38677 * 120.41537 * 270.26287 * 12 11 10 14 14 C 1.38625 * 118.42126 * 180.22222 * 13 12 11 15 15 C 1.38223 * 119.15978 * 359.46985 * 14 13 12 16 16 N 1.31856 * 120.76567 * 0.30777 * 15 14 13 17 17 C 1.31884 * 121.72562 * 359.97275 * 16 15 14 18 18 C 1.39241 * 120.00090 * 270.00031 * 10 9 7 19 19 C 1.38947 * 119.55222 * 184.73039 * 18 10 9 20 20 C 1.38643 * 119.25874 * 179.71343 * 19 18 10 21 21 C 1.38648 * 118.35425 * 0.52630 * 20 19 18 22 22 C 1.39356 * 119.47808 * 359.75630 * 21 20 19 23 23 N 1.32354 * 120.49571 * 359.97102 * 22 21 20 24 24 N 1.39797 * 119.04030 * 179.91807 * 22 21 20 25 25 C 1.35004 * 119.16011 * 15.45895 * 24 22 21 26 26 O 1.21292 * 120.07659 * 181.63583 * 25 24 22 27 27 C 1.50747 * 119.84551 * 1.61469 * 25 24 22 28 28 O 1.35982 * 120.75996 * 179.79293 * 21 20 19 29 29 H 0.96992 * 120.00539 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47174 * 59.99861 * 9 7 2 31 31 H 1.08999 * 109.47137 * 299.99991 * 9 7 2 32 32 H 1.08993 * 109.47314 * 329.99622 * 11 10 9 33 33 H 1.09007 * 109.46809 * 209.99761 * 11 10 9 34 34 H 1.08003 * 120.78603 * 359.97006 * 13 12 11 35 35 H 1.08002 * 120.42343 * 179.75479 * 14 13 12 36 36 H 1.08005 * 119.61951 * 180.28273 * 15 14 13 37 37 H 1.07998 * 119.61861 * 180.02562 * 17 16 15 38 38 H 1.08001 * 120.36900 * 359.96167 * 19 18 10 39 39 H 1.07996 * 120.82287 * 180.24079 * 20 19 18 40 40 H 0.97001 * 120.41533 * 195.43813 * 24 22 21 41 41 H 1.09003 * 109.46503 * 88.86416 * 27 25 24 42 42 H 1.09002 * 109.46653 * 208.83134 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5466 1.4405 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4648 -2.1292 0.0005 9 6 3.5116 -1.1937 0.0011 10 7 4.0001 -2.5749 0.0022 11 6 4.2448 -3.2663 -1.2660 12 6 5.6683 -3.0298 -1.7006 13 6 5.9873 -1.9405 -2.4973 14 6 7.3090 -1.7651 -2.8768 15 6 8.2600 -2.6692 -2.4424 16 7 7.9211 -3.6913 -1.6815 17 6 6.6730 -3.8924 -1.3058 18 6 4.2318 -3.2305 1.2086 19 6 4.7878 -4.5038 1.2009 20 6 5.0215 -5.1486 2.4058 21 6 4.6776 -4.4955 3.5795 22 6 4.1177 -3.2210 3.5164 23 7 3.9141 -2.6339 2.3478 24 7 3.7728 -2.5716 4.7055 25 6 4.2644 -3.0349 5.8744 26 8 3.9524 -2.5024 6.9186 27 6 5.2015 -4.2156 5.8789 28 8 4.8814 -5.0842 4.7883 29 1 -0.4850 0.8399 -0.0004 30 1 3.8746 -0.6797 0.8911 31 1 3.8753 -0.6801 -0.8888 32 1 3.5643 -2.8829 -2.0261 33 1 4.0779 -4.3356 -1.1349 34 1 5.2234 -1.2476 -2.8180 35 1 7.5928 -0.9301 -3.5002 36 1 9.2927 -2.5371 -2.7298 37 1 6.4335 -4.7407 -0.6818 38 1 5.0390 -4.9843 0.2668 39 1 5.4561 -6.1369 2.4294 40 1 3.1881 -1.7979 4.6907 41 1 6.2283 -3.8649 5.7745 42 1 5.0972 -4.7586 6.8182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164007367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:48 Heat of formation + Delta-G solvation = 35.129641 kcal Electronic energy + Delta-G solvation = -29180.983531 eV Core-core repulsion = 25127.480089 eV Total energy + Delta-G solvation = -4053.503441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41462 -40.28665 -39.32421 -38.02219 -36.38795 -34.83898 -33.10458 -32.37589 -32.06449 -31.15329 -29.79447 -28.31109 -27.42573 -25.61870 -23.91297 -23.52692 -23.23607 -22.11786 -21.25146 -19.52850 -18.76874 -18.16288 -17.26267 -17.04816 -16.95673 -16.62918 -16.19249 -15.74808 -15.55211 -15.22418 -14.91560 -14.57421 -14.44502 -14.30601 -13.89864 -13.60258 -13.39386 -13.24247 -13.08683 -12.89588 -12.65073 -12.55249 -11.98793 -11.82546 -11.69559 -11.50889 -11.05952 -10.89447 -10.65460 -10.35961 -10.19903 -9.82250 -9.64493 -9.50183 -9.34285 -9.17444 -9.03547 -8.67876 -8.51082 -6.90058 -6.16822 -4.15639 1.04652 1.14160 1.28430 1.57980 2.31183 2.65774 3.16900 3.21675 3.28543 3.29587 3.52011 3.84755 3.99044 4.08012 4.30240 4.38424 4.67780 4.78289 4.81258 4.85093 4.97390 5.00354 5.01506 5.08315 5.16176 5.26756 5.36881 5.47497 5.62233 5.68749 5.83546 5.91261 5.98185 6.10204 6.28369 6.30555 6.52238 6.53172 6.66140 6.67317 6.83016 7.28537 7.44499 7.50699 7.74779 7.86029 7.93379 8.37149 8.50018 8.88116 9.42942 10.96370 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007462 B = 0.005128 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3751.533168 B = 5458.852445 C = 8252.738280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.227 3.773 10 N -0.574 5.574 11 C 0.168 3.832 12 C -0.151 4.151 13 C -0.058 4.058 14 C -0.175 4.175 15 C 0.092 3.908 16 N -0.488 5.488 17 C 0.107 3.893 18 C 0.440 3.560 19 C -0.253 4.253 20 C -0.018 4.018 21 C -0.053 4.053 22 C 0.360 3.640 23 N -0.520 5.520 24 N -0.644 5.644 25 C 0.499 3.501 26 O -0.516 6.516 27 C 0.050 3.950 28 O -0.300 6.300 29 H 0.265 0.735 30 H 0.042 0.958 31 H 0.021 0.979 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.422 0.578 41 H 0.095 0.905 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.874 -9.002 -0.870 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.696 3.304 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.093 0.907 9 C 0.106 3.894 10 N -0.282 5.282 11 C 0.043 3.957 12 C -0.155 4.155 13 C -0.084 4.084 14 C -0.195 4.195 15 C -0.065 4.065 16 N -0.196 5.196 17 C -0.050 4.050 18 C 0.203 3.797 19 C -0.280 4.280 20 C -0.044 4.044 21 C -0.104 4.104 22 C 0.126 3.874 23 N -0.243 5.243 24 N -0.293 5.293 25 C 0.286 3.714 26 O -0.390 6.390 27 C -0.028 4.028 28 O -0.214 6.214 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.262 0.738 41 H 0.113 0.887 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.866 -8.555 -0.107 17.152 hybrid contribution -0.360 1.633 -0.304 1.699 sum 14.505 -6.923 -0.410 16.078 Atomic orbital electron populations 1.69883 1.06152 1.26966 1.50380 1.24821 0.94662 0.98706 0.94612 0.86960 0.80607 0.84274 0.78524 1.20175 1.20968 1.18990 1.21304 0.89062 0.94717 1.51207 0.90654 1.19672 0.95607 0.76928 0.97159 1.46771 1.66277 1.15084 1.00041 1.20282 0.90738 0.98136 0.86533 1.21544 0.98593 0.96658 0.98686 1.21635 0.96736 0.95760 0.94293 1.22144 0.94062 1.01123 1.02155 1.22721 0.99756 0.90330 0.93707 1.67686 1.20116 1.20446 1.11358 1.22828 0.87670 0.98344 0.96196 1.17870 0.88655 0.87753 0.85401 1.21313 1.11690 0.96326 0.98624 1.20537 0.95435 0.99701 0.88752 1.18863 1.10949 0.94020 0.86571 1.18157 0.94462 0.88567 0.86221 1.66446 1.24895 1.37053 0.95859 1.43723 1.48493 1.33046 1.04082 1.21586 0.81610 0.85441 0.82792 1.90802 1.58427 1.59477 1.30295 1.23126 0.97943 0.89759 0.91983 1.86222 1.87560 1.32938 1.14684 0.92545 0.94034 0.96145 0.88187 0.89717 0.84482 0.84942 0.83105 0.82734 0.84314 0.83770 0.73788 0.88721 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -13.81 9.94 -34.44 -0.34 -14.15 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 9 C 0.23 4.98 4.21 -5.19 -0.02 4.95 16 10 N -0.57 -10.42 2.56 -176.54 -0.45 -10.87 16 11 C 0.17 2.36 5.35 -5.19 -0.03 2.33 16 12 C -0.15 -1.95 5.48 -104.48 -0.57 -2.53 16 13 C -0.06 -0.72 9.86 -39.28 -0.39 -1.10 16 14 C -0.18 -1.89 10.11 -39.44 -0.40 -2.29 16 15 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 16 N -0.49 -6.36 10.36 -13.25 -0.14 -6.49 16 17 C 0.11 1.33 10.37 -17.55 -0.18 1.15 16 18 C 0.44 7.82 7.37 -154.80 -1.14 6.68 16 19 C -0.25 -3.49 8.51 -39.17 -0.33 -3.83 16 20 C -0.02 -0.23 10.12 -39.28 -0.40 -0.63 16 21 C -0.05 -0.78 6.45 -39.01 -0.25 -1.03 16 22 C 0.36 6.13 7.60 -154.19 -1.17 4.96 16 23 N -0.52 -10.14 9.18 -11.31 -0.10 -10.24 16 24 N -0.64 -10.32 5.49 -11.18 -0.06 -10.38 16 25 C 0.50 7.26 7.93 -10.86 -0.09 7.17 16 26 O -0.52 -8.75 17.95 5.55 0.10 -8.65 16 27 C 0.05 0.55 7.18 36.03 0.26 0.81 16 28 O -0.30 -3.90 10.46 -19.68 -0.21 -4.11 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.04 0.99 6.51 -51.93 -0.34 0.65 16 31 H 0.02 0.43 7.50 -51.93 -0.39 0.04 16 32 H 0.10 1.43 8.03 -51.93 -0.42 1.02 16 33 H 0.08 0.99 6.32 -51.93 -0.33 0.67 16 34 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.16 1.65 5.52 -52.49 -0.29 1.36 16 38 H 0.14 1.52 3.93 -52.49 -0.21 1.31 16 39 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.42 6.88 8.94 -40.82 -0.36 6.52 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -33.56 356.94 -9.19 -42.75 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.46 Total: 7.24 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -5.35 Total: 5.28 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 0.02 Total: -63.64 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.11 Total: -12.76 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.56 -9.19 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164007367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.875 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds