Wall clock time and date at job start Tue Mar 31 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47357 * 240.00457 * 3 2 1 5 5 H 1.48504 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47521 * 120.00134 * 3 2 1 7 7 C 1.37879 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00226 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40237 * 71.36396 * 9 7 2 11 11 O 1.42094 * 106.40244 * 298.43991 * 9 7 2 12 12 N 1.65604 * 107.21880 * 184.89949 * 9 7 2 13 13 C 1.39673 * 120.00204 * 298.45220 * 12 9 7 14 14 C 1.38914 * 120.07426 * 133.81146 * 13 12 9 15 15 C 1.38102 * 119.92469 * 180.27837 * 14 13 12 16 16 C 1.38286 * 120.07133 * 359.51612 * 15 14 13 17 17 C 1.50703 * 119.92377 * 180.25661 * 16 15 14 18 18 C 1.52998 * 109.47006 * 270.20587 * 17 16 15 19 19 N 1.46901 * 109.47184 * 179.97438 * 18 17 16 20 20 C 1.47016 * 111.00166 * 293.63633 * 19 18 17 21 21 C 1.53102 * 109.25728 * 177.60577 * 20 19 18 22 22 O 1.43009 * 109.26068 * 56.84817 * 21 20 19 23 23 C 1.43020 * 113.73912 * 301.33394 * 22 21 20 24 24 C 1.47009 * 111.00106 * 169.99696 * 19 18 17 25 25 C 1.38282 * 120.15580 * 0.45886 * 16 15 14 26 26 C 1.38107 * 120.06987 * 359.79694 * 25 16 15 27 27 H 0.96997 * 119.99889 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99878 * 118.45085 * 12 9 7 29 29 H 1.08003 * 120.03540 * 359.97438 * 14 13 12 30 30 H 1.08001 * 119.96162 * 179.72052 * 15 14 13 31 31 H 1.09006 * 109.46847 * 30.20584 * 17 16 15 32 32 H 1.08996 * 109.47409 * 150.20582 * 17 16 15 33 33 H 1.08994 * 109.47648 * 299.99939 * 18 17 16 34 34 H 1.08998 * 109.47200 * 60.00295 * 18 17 16 35 35 H 1.08999 * 109.50768 * 297.53866 * 20 19 18 36 36 H 1.08999 * 109.50794 * 57.67078 * 20 19 18 37 37 H 1.09002 * 109.50356 * 296.91469 * 21 20 19 38 38 H 1.09002 * 109.54040 * 176.80672 * 21 20 19 39 39 H 1.09000 * 109.49860 * 298.73207 * 23 22 21 40 40 H 1.08993 * 109.54306 * 178.62549 * 23 22 21 41 41 H 1.08995 * 109.51317 * 302.33326 * 24 19 18 42 42 H 1.09006 * 109.50689 * 62.42193 * 24 19 18 43 43 H 1.07993 * 119.96714 * 179.76753 * 25 16 15 44 44 H 1.08004 * 120.03639 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.5450 -2.8494 -1.2921 11 8 0.3611 -2.7432 1.1984 12 7 2.2432 -3.9326 0.1339 13 6 3.2162 -4.0975 -0.8546 14 6 4.5449 -4.2906 -0.4982 15 6 5.5052 -4.4476 -1.4782 16 6 5.1438 -4.4226 -2.8128 17 6 6.1937 -4.6000 -3.8793 18 6 6.7629 -3.2337 -4.2668 19 7 7.7867 -3.4066 -5.3060 20 6 8.9546 -4.1284 -4.7802 21 6 9.9682 -4.3386 -5.9082 22 8 10.3218 -3.0707 -6.4670 23 6 9.2082 -2.3408 -6.9892 24 6 8.1869 -2.1103 -5.8722 25 6 3.8221 -4.2311 -3.1711 26 6 2.8574 -4.0682 -2.1963 27 1 -0.4850 0.8400 0.0004 28 1 2.2235 -4.5284 0.8991 29 1 4.8272 -4.3131 0.5440 30 1 6.5390 -4.5932 -1.2019 31 1 6.9953 -5.2328 -3.4984 32 1 5.7459 -5.0688 -4.7555 33 1 5.9614 -2.6009 -4.6477 34 1 7.2107 -2.7649 -3.3906 35 1 9.4140 -3.5450 -3.9822 36 1 8.6390 -5.0957 -4.3894 37 1 9.5266 -4.9669 -6.6818 38 1 10.8603 -4.8230 -5.5111 39 1 8.7447 -2.9111 -7.7942 40 1 9.5500 -1.3800 -7.3738 41 1 7.3111 -1.6045 -6.2785 42 1 8.6334 -1.4944 -5.0915 43 1 3.5438 -4.2084 -4.2143 44 1 1.8253 -3.9183 -2.4767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980437.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:46 Heat of formation + Delta-G solvation = -109.417982 kcal Electronic energy + Delta-G solvation = -27145.726731 eV Core-core repulsion = 23189.106434 eV Total energy + Delta-G solvation = -3956.620296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.91311 -39.16334 -36.53369 -35.39103 -34.71046 -34.11200 -33.15071 -31.76837 -31.33597 -30.57752 -28.27716 -26.19977 -25.87666 -24.32883 -22.64709 -22.48903 -20.77683 -20.48919 -19.14006 -17.71782 -17.14879 -16.89042 -16.43754 -16.29613 -15.57952 -15.45722 -15.34291 -15.04462 -14.76792 -14.73173 -14.09164 -14.03183 -13.86325 -13.42101 -13.24644 -13.03485 -12.86037 -12.47729 -12.12255 -12.06743 -11.73728 -11.68067 -11.51024 -11.30133 -11.24247 -11.05536 -10.94850 -10.68620 -10.66056 -10.55138 -10.44288 -10.19023 -9.96146 -9.72170 -9.29187 -8.92005 -8.67123 -8.58328 -7.73813 -6.76312 -5.38822 1.59114 1.75766 2.19999 3.05310 3.09531 3.15415 3.44235 3.60662 4.00588 4.07637 4.52899 4.56872 4.61796 4.68148 4.70917 4.84842 4.93099 4.99614 5.08126 5.22026 5.26149 5.26932 5.31035 5.33686 5.46530 5.52612 5.59988 5.61818 5.64452 5.72857 5.79159 5.87903 6.01328 6.11456 6.34773 6.49168 6.54730 6.67535 6.68748 6.75375 6.82965 6.90043 7.05548 7.25397 7.33076 7.80146 7.91218 8.82556 10.17835 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002740 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.341545 B =10217.621404 C =11470.729473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.013 5.013 8 H 0.103 0.897 9 S 2.706 3.294 10 O -0.999 6.999 11 O -0.996 6.996 12 N -1.077 6.077 13 C 0.178 3.822 14 C -0.144 4.144 15 C -0.102 4.102 16 C -0.114 4.114 17 C -0.067 4.067 18 C 0.058 3.942 19 N -0.538 5.538 20 C 0.013 3.987 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.016 3.984 25 C -0.092 4.092 26 C -0.145 4.145 27 H 0.292 0.708 28 H 0.411 0.589 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.123 0.877 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.520 -7.705 -9.847 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.147 5.147 8 H 0.121 0.879 9 S 2.808 3.192 10 O -0.989 6.989 11 O -0.986 6.986 12 N -0.821 5.821 13 C 0.080 3.920 14 C -0.165 4.165 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.105 4.105 18 C -0.069 4.069 19 N -0.263 5.263 20 C -0.115 4.115 21 C -0.014 4.014 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.166 4.166 27 H 0.103 0.897 28 H 0.245 0.755 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.141 0.859 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.307 -7.854 -10.389 20.869 hybrid contribution 0.984 1.440 1.282 2.165 sum 17.291 -6.413 -9.107 20.568 Atomic orbital electron populations 1.69882 1.06742 1.30957 1.39804 1.24725 0.94476 1.00776 0.88425 0.86180 0.79893 0.79548 0.79867 1.18790 1.20024 1.18828 1.30370 1.06046 1.11176 1.67112 0.87902 1.00837 0.71979 0.73280 0.73128 1.93319 1.75963 1.87117 1.42473 1.93390 1.68945 1.87360 1.48901 1.54033 1.47557 1.49529 1.30962 1.17449 0.88300 0.97982 0.88230 1.21112 0.91695 1.04060 0.99667 1.20729 0.98513 1.00751 0.92091 1.19661 0.94360 1.03617 0.93959 1.20460 0.96457 0.96412 0.97137 1.22195 0.94274 0.97773 0.92677 1.62235 1.10670 1.19265 1.34143 1.22855 0.91486 1.00160 0.97005 1.22672 0.98037 0.85606 0.95036 1.87977 1.32559 1.31640 1.78498 1.22667 0.86831 0.96845 0.94931 1.22790 0.99562 0.90931 0.97944 1.20872 0.91916 0.99111 0.99140 1.21989 1.02559 1.00625 0.91385 0.89728 0.75532 0.85932 0.86562 0.91479 0.90344 0.90043 0.94312 0.93936 0.89210 0.92249 0.88575 0.92213 0.88502 0.89372 0.93877 0.85895 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.43 13.10 55.43 0.73 -23.70 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -1.01 -27.57 9.61 30.60 0.29 -27.28 16 8 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 9 S 2.71 70.15 4.94 -107.50 -0.53 69.62 16 10 O -1.00 -27.68 15.15 -57.17 -0.87 -28.54 16 11 O -1.00 -28.58 17.91 -57.17 -1.02 -29.61 16 12 N -1.08 -21.43 5.77 32.41 0.19 -21.25 16 13 C 0.18 3.30 6.13 -83.79 -0.51 2.79 16 14 C -0.14 -2.23 9.97 -39.38 -0.39 -2.62 16 15 C -0.10 -1.37 9.69 -39.61 -0.38 -1.76 16 16 C -0.11 -1.52 5.14 -104.59 -0.54 -2.06 16 17 C -0.07 -0.70 5.28 -27.88 -0.15 -0.84 16 18 C 0.06 0.62 4.94 -3.82 -0.02 0.60 16 19 N -0.54 -5.22 4.73 -234.31 -1.11 -6.33 16 20 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 21 C 0.06 0.51 7.01 37.21 0.26 0.77 16 22 O -0.39 -3.87 10.83 -35.23 -0.38 -4.26 16 23 C 0.06 0.53 7.01 37.21 0.26 0.79 16 24 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 25 C -0.09 -1.40 9.69 -39.61 -0.38 -1.78 16 26 C -0.14 -2.70 9.23 -39.38 -0.36 -3.06 16 27 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.41 6.86 8.96 -34.47 -0.31 6.55 16 29 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.07 0.61 6.46 -51.93 -0.34 0.28 16 32 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.67 6.38 -51.93 -0.33 0.34 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.16 3.28 5.71 -52.48 -0.30 2.98 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -34.33 372.50 -10.77 -45.10 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.30 Total: 8.55 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -2.06 Total: -30.65 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.19 Total: -51.28 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -2.27 Total: -62.41 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 70.15 SS G_CDS: -0.53 Total: 69.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.33 -10.77 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980437.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.315 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds