Wall clock time and date at job start Tue Mar 31 2020 22:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48508 * 109.46702 * 269.99738 * 3 2 1 5 5 H 1.48501 * 109.47051 * 29.99346 * 3 2 1 6 6 H 1.48495 * 109.47154 * 149.99972 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00315 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42095 * 106.40009 * 66.45880 * 9 7 2 11 11 O 1.42107 * 106.40060 * 293.54395 * 9 7 2 12 12 N 1.65594 * 107.21866 * 180.02562 * 9 7 2 13 13 C 1.46497 * 120.00391 * 65.00380 * 12 9 7 14 14 C 1.53123 * 109.51995 * 264.68422 * 13 12 9 15 15 C 1.53035 * 109.27774 * 182.44235 * 14 13 12 16 16 N 1.46846 * 109.52744 * 59.17321 * 15 14 13 17 17 C 1.46904 * 110.99942 * 174.16069 * 16 15 14 18 18 C 1.50699 * 109.46896 * 170.00012 * 17 16 15 19 19 C 1.38264 * 119.94572 * 269.72978 * 18 17 16 20 20 C 1.38146 * 120.05799 * 179.72888 * 19 18 17 21 21 C 1.38736 * 119.93801 * 0.54093 * 20 19 18 22 22 O 1.35901 * 120.05299 * 179.74716 * 21 20 19 23 23 C 1.38733 * 119.89081 * 359.73129 * 21 20 19 24 24 C 1.38138 * 119.94280 * 359.97438 * 23 21 20 25 25 C 1.46844 * 111.19783 * 298.26158 * 16 15 14 26 26 C 1.53032 * 109.52527 * 61.73901 * 25 16 15 27 27 H 0.96995 * 119.99995 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99936 * 245.00194 * 12 9 7 29 29 H 1.08998 * 109.57266 * 24.83358 * 13 12 9 30 30 H 1.08995 * 109.51026 * 62.49507 * 14 13 12 31 31 H 1.09011 * 109.49940 * 302.37472 * 14 13 12 32 32 H 1.09008 * 109.45841 * 299.15478 * 15 14 13 33 33 H 1.09003 * 109.46290 * 179.19461 * 15 14 13 34 34 H 1.09003 * 109.47099 * 290.00441 * 17 16 15 35 35 H 1.09003 * 109.46551 * 50.00244 * 17 16 15 36 36 H 1.08001 * 119.96910 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.03053 * 180.27530 * 20 19 18 38 38 H 0.96702 * 114.00503 * 269.98666 * 22 21 20 39 39 H 1.07998 * 120.02360 * 179.97438 * 23 21 20 40 40 H 1.08005 * 119.97079 * 180.02562 * 24 23 21 41 41 H 1.09000 * 109.46271 * 181.75698 * 25 16 15 42 42 H 1.09008 * 109.46154 * 301.73497 * 25 16 15 43 43 H 1.09000 * 109.50025 * 60.76400 * 26 25 16 44 44 H 1.09000 * 109.50523 * 180.83925 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2509 11 8 4.1683 -0.6499 -1.2485 12 7 4.2567 -2.7759 0.0011 13 6 3.9619 -3.6340 -1.1491 14 6 2.6759 -4.4216 -0.8835 15 6 2.4062 -5.3606 -2.0614 16 7 3.5394 -6.2800 -2.2257 17 6 3.2559 -7.2857 -3.2583 18 6 4.5153 -8.0511 -3.5731 19 6 5.3612 -7.6072 -4.5726 20 6 6.5191 -8.3039 -4.8594 21 6 6.8272 -9.4562 -4.1509 22 8 7.9631 -10.1463 -4.4346 23 6 5.9740 -9.9028 -3.1523 24 6 4.8204 -9.1991 -2.8653 25 6 4.7765 -5.5490 -2.5285 26 6 5.1170 -4.6157 -1.3646 27 1 -0.4850 0.8400 -0.0004 28 1 4.7390 -3.1342 0.7625 29 1 3.8350 -3.0194 -2.0403 30 1 1.8416 -3.7293 -0.7716 31 1 2.7893 -5.0064 0.0295 32 1 2.2791 -4.7743 -2.9715 33 1 1.4988 -5.9333 -1.8690 34 1 2.4933 -7.9745 -2.8949 35 1 2.8973 -6.7894 -4.1601 36 1 5.1184 -6.7127 -5.1270 37 1 7.1817 -7.9542 -5.6372 38 1 7.8503 -10.8291 -5.1100 39 1 6.2115 -10.7998 -2.5997 40 1 4.1561 -9.5460 -2.0877 41 1 5.5908 -6.2585 -2.6754 42 1 4.6383 -4.9617 -3.4364 43 1 5.2688 -5.2035 -0.4593 44 1 6.0272 -4.0624 -1.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:42 Heat of formation + Delta-G solvation = -94.552064 kcal Electronic energy + Delta-G solvation = -27600.911844 eV Core-core repulsion = 23644.936182 eV Total energy + Delta-G solvation = -3955.975662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.30477 -38.97065 -37.15718 -35.61409 -34.97771 -34.39553 -33.03479 -31.64141 -31.34064 -30.69708 -29.21088 -26.39910 -25.60741 -23.35963 -22.82519 -22.62589 -21.19080 -19.80515 -18.98854 -18.70070 -17.44830 -16.72405 -16.41720 -16.13750 -16.01107 -15.61951 -15.31176 -14.91206 -14.59696 -14.29101 -14.06507 -13.87548 -13.63853 -13.43509 -13.27372 -13.20868 -12.84962 -12.64628 -12.36872 -11.98427 -11.92298 -11.80893 -11.54955 -11.36827 -11.04010 -10.98052 -10.74428 -10.73837 -10.65955 -10.58432 -10.45492 -10.19645 -9.72981 -9.24441 -9.20004 -9.09960 -8.83431 -8.56039 -8.26611 -6.79356 -5.32638 0.90378 1.08334 2.12233 3.08265 3.18560 3.26984 3.28626 3.88536 3.96361 4.04267 4.32677 4.51203 4.57063 4.61229 4.70681 4.96503 5.03757 5.09471 5.10388 5.18891 5.33276 5.40213 5.45076 5.47351 5.54972 5.60903 5.69015 5.74969 5.76079 5.83878 5.95335 5.99278 6.13062 6.14089 6.21579 6.28975 6.31807 6.35219 6.51879 6.62452 6.81579 7.03747 7.11222 7.32734 7.49076 7.80284 8.23903 8.72375 10.32435 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002536 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.577855 B =11037.356524 C =11487.583541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.221 1.221 7 C -1.014 5.014 8 H 0.126 0.874 9 S 2.674 3.326 10 O -1.011 7.011 11 O -1.014 7.014 12 N -1.119 6.119 13 C 0.158 3.842 14 C -0.140 4.140 15 C 0.058 3.942 16 N -0.532 5.532 17 C 0.092 3.908 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.146 4.146 21 C 0.100 3.900 22 O -0.501 6.501 23 C -0.146 4.146 24 C -0.082 4.082 25 C 0.053 3.947 26 C -0.120 4.120 27 H 0.280 0.720 28 H 0.405 0.595 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.388 0.612 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -20.219 -9.519 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.065 4.065 3 Si 0.621 3.379 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.143 1.143 7 C -1.149 5.149 8 H 0.144 0.856 9 S 2.775 3.225 10 O -1.001 7.001 11 O -1.004 7.004 12 N -0.873 5.873 13 C 0.050 3.950 14 C -0.180 4.180 15 C -0.070 4.070 16 N -0.257 5.257 17 C -0.035 4.035 18 C -0.087 4.087 19 C -0.116 4.116 20 C -0.164 4.164 21 C 0.056 3.944 22 O -0.311 6.311 23 C -0.165 4.165 24 C -0.101 4.101 25 C -0.076 4.076 26 C -0.159 4.159 27 H 0.090 0.910 28 H 0.236 0.764 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.244 0.756 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.513 -19.165 -8.803 22.743 hybrid contribution -0.558 0.374 -0.771 1.023 sum 7.955 -18.791 -9.575 22.540 Atomic orbital electron populations 1.69984 1.06554 1.28978 1.39812 1.24415 0.94757 0.98750 0.88618 0.87872 0.83612 0.84655 0.81728 1.17129 1.18028 1.14267 1.30566 1.15588 1.02164 1.66543 0.85642 1.01368 0.77389 0.70499 0.73204 1.93471 1.85545 1.76024 1.45057 1.93401 1.85063 1.76211 1.45687 1.55522 1.73831 1.31180 1.26745 1.20652 0.93915 0.91558 0.88883 1.22281 0.99253 0.98229 0.98214 1.22113 0.92933 0.93680 0.98279 1.62132 1.03727 1.15654 1.44198 1.21080 0.94242 0.94219 0.93975 1.19839 0.96975 0.95782 0.96133 1.21022 0.93801 0.99394 0.97338 1.21387 0.97612 0.96474 1.00950 1.18505 0.86584 0.93146 0.96188 1.84839 1.30793 1.52929 1.62534 1.21428 0.94489 1.01343 0.99223 1.20939 0.96393 0.94287 0.98487 1.22208 0.92698 0.95875 0.96792 1.21881 0.98224 0.96680 0.99124 0.90973 0.76357 0.89374 0.89017 0.90753 0.94325 0.90425 0.89692 0.93761 0.85666 0.85476 0.75604 0.85490 0.85271 0.90067 0.94644 0.90731 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.44 13.96 55.43 0.77 -22.66 16 2 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.57 26.54 -169.99 -4.51 16.06 16 4 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.22 -5.80 5.61 56.52 0.32 -5.49 16 7 C -1.01 -27.49 10.13 30.60 0.31 -27.18 16 8 H 0.13 3.35 5.94 -52.49 -0.31 3.04 16 9 S 2.67 65.94 4.22 -107.50 -0.45 65.49 16 10 O -1.01 -27.14 16.02 -57.17 -0.92 -28.06 16 11 O -1.01 -26.85 16.17 -57.17 -0.92 -27.77 16 12 N -1.12 -21.05 5.48 -4.79 -0.03 -21.08 16 13 C 0.16 2.63 2.86 -67.81 -0.19 2.44 16 14 C -0.14 -2.18 5.70 -26.65 -0.15 -2.33 16 15 C 0.06 0.75 5.42 -3.84 -0.02 0.73 16 16 N -0.53 -6.21 4.80 -236.11 -1.13 -7.34 16 17 C 0.09 0.88 5.43 -4.97 -0.03 0.85 16 18 C -0.09 -0.81 4.11 -104.60 -0.43 -1.24 16 19 C -0.10 -0.87 7.80 -39.61 -0.31 -1.18 16 20 C -0.15 -1.28 9.99 -39.43 -0.39 -1.67 16 21 C 0.10 0.90 6.71 -39.21 -0.26 0.64 16 22 O -0.50 -4.02 13.50 -19.43 -0.26 -4.28 16 23 C -0.15 -1.26 9.99 -39.44 -0.39 -1.66 16 24 C -0.08 -0.73 9.69 -39.61 -0.38 -1.11 16 25 C 0.05 0.63 4.58 -3.84 -0.02 0.62 16 26 C -0.12 -1.62 5.63 -26.66 -0.15 -1.77 16 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.40 6.57 8.84 -34.46 -0.30 6.27 16 29 H 0.09 1.60 7.51 -51.93 -0.39 1.21 16 30 H 0.09 1.64 5.86 -51.93 -0.30 1.34 16 31 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.39 1.17 9.06 45.56 0.41 1.58 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.08 0.94 5.65 -51.93 -0.29 0.64 16 42 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -33.97 362.36 -9.99 -43.96 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.47 Total: 8.83 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -2.52 Total: -28.61 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.39 Total: -51.08 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -2.10 Total: -60.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.51 Total: 16.06 kcal Atomic # 16 Polarization: 65.94 SS G_CDS: -0.45 Total: 65.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.97 -9.99 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.589 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds