Wall clock time and date at job start Tue Mar 31 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48508 * 109.46702 * 269.99738 * 3 2 1 5 5 H 1.48501 * 109.47051 * 29.99346 * 3 2 1 6 6 H 1.48495 * 109.47154 * 149.99972 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00315 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00180 * 180.02562 * 7 2 1 10 10 O 1.42095 * 106.40009 * 66.45880 * 9 7 2 11 11 O 1.42107 * 106.40060 * 293.54395 * 9 7 2 12 12 N 1.65594 * 107.21866 * 180.02562 * 9 7 2 13 13 C 1.46497 * 120.00391 * 65.00380 * 12 9 7 14 14 C 1.53123 * 109.51995 * 264.68422 * 13 12 9 15 15 C 1.53035 * 109.27774 * 182.44235 * 14 13 12 16 16 N 1.46846 * 109.52744 * 59.17321 * 15 14 13 17 17 C 1.46904 * 110.99942 * 174.16069 * 16 15 14 18 18 C 1.50699 * 109.46896 * 170.00012 * 17 16 15 19 19 C 1.38264 * 119.94572 * 269.72978 * 18 17 16 20 20 C 1.38146 * 120.05799 * 179.72888 * 19 18 17 21 21 C 1.38736 * 119.93801 * 0.54093 * 20 19 18 22 22 O 1.35901 * 120.05299 * 179.74716 * 21 20 19 23 23 C 1.38733 * 119.89081 * 359.73129 * 21 20 19 24 24 C 1.38138 * 119.94280 * 359.97438 * 23 21 20 25 25 C 1.46844 * 111.19783 * 298.26158 * 16 15 14 26 26 C 1.53032 * 109.52527 * 61.73901 * 25 16 15 27 27 H 0.96995 * 119.99995 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99936 * 245.00194 * 12 9 7 29 29 H 1.08998 * 109.57266 * 24.83358 * 13 12 9 30 30 H 1.08995 * 109.51026 * 62.49507 * 14 13 12 31 31 H 1.09011 * 109.49940 * 302.37472 * 14 13 12 32 32 H 1.09008 * 109.45841 * 299.15478 * 15 14 13 33 33 H 1.09003 * 109.46290 * 179.19461 * 15 14 13 34 34 H 1.09003 * 109.47099 * 290.00441 * 17 16 15 35 35 H 1.09003 * 109.46551 * 50.00244 * 17 16 15 36 36 H 1.08001 * 119.96910 * 359.97438 * 19 18 17 37 37 H 1.08001 * 120.03053 * 180.27530 * 20 19 18 38 38 H 0.96702 * 114.00503 * 269.98666 * 22 21 20 39 39 H 1.07998 * 120.02360 * 179.97438 * 23 21 20 40 40 H 1.08005 * 119.97079 * 180.02562 * 24 23 21 41 41 H 1.09000 * 109.46271 * 181.75698 * 25 16 15 42 42 H 1.09008 * 109.46154 * 301.73497 * 25 16 15 43 43 H 1.09000 * 109.50025 * 60.76400 * 26 25 16 44 44 H 1.09000 * 109.50523 * 180.83925 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2509 11 8 4.1683 -0.6499 -1.2485 12 7 4.2567 -2.7759 0.0011 13 6 3.9619 -3.6340 -1.1491 14 6 2.6759 -4.4216 -0.8835 15 6 2.4062 -5.3606 -2.0614 16 7 3.5394 -6.2800 -2.2257 17 6 3.2559 -7.2857 -3.2583 18 6 4.5153 -8.0511 -3.5731 19 6 5.3612 -7.6072 -4.5726 20 6 6.5191 -8.3039 -4.8594 21 6 6.8272 -9.4562 -4.1509 22 8 7.9631 -10.1463 -4.4346 23 6 5.9740 -9.9028 -3.1523 24 6 4.8204 -9.1991 -2.8653 25 6 4.7765 -5.5490 -2.5285 26 6 5.1170 -4.6157 -1.3646 27 1 -0.4850 0.8400 -0.0004 28 1 4.7390 -3.1342 0.7625 29 1 3.8350 -3.0194 -2.0403 30 1 1.8416 -3.7293 -0.7716 31 1 2.7893 -5.0064 0.0295 32 1 2.2791 -4.7743 -2.9715 33 1 1.4988 -5.9333 -1.8690 34 1 2.4933 -7.9745 -2.8949 35 1 2.8973 -6.7894 -4.1601 36 1 5.1184 -6.7127 -5.1270 37 1 7.1817 -7.9542 -5.6372 38 1 7.8503 -10.8291 -5.1100 39 1 6.2115 -10.7998 -2.5997 40 1 4.1561 -9.5460 -2.0877 41 1 5.5908 -6.2585 -2.6754 42 1 4.6383 -4.9617 -3.4364 43 1 5.2688 -5.2035 -0.4593 44 1 6.0272 -4.0624 -1.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:41 Heat of formation + Delta-G solvation = -122.663497 kcal Electronic energy + Delta-G solvation = -27602.130847 eV Core-core repulsion = 23644.936182 eV Total energy + Delta-G solvation = -3957.194665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.02847 -39.91003 -37.94528 -37.60956 -36.47197 -36.14865 -35.16437 -32.68558 -32.05342 -31.69388 -30.21843 -28.50467 -26.49988 -24.26865 -23.70790 -23.58187 -21.97099 -21.18454 -20.73559 -19.41248 -19.29622 -18.58256 -17.68136 -17.09662 -16.88006 -16.72005 -16.41025 -16.24375 -15.87239 -15.54066 -15.31325 -15.16766 -14.93178 -14.74663 -14.64887 -14.29976 -14.26739 -13.68601 -13.43939 -13.38947 -13.18746 -12.96849 -12.80533 -12.69660 -12.57869 -12.55886 -12.40982 -12.08728 -12.07039 -11.89286 -11.79964 -11.34716 -11.33299 -11.26801 -11.02651 -10.18562 -9.87833 -9.52657 -9.14043 -8.93273 -7.47335 0.18633 0.26113 0.44700 1.05538 1.14324 1.22412 1.90245 2.44628 2.57680 2.61573 3.14431 3.34316 3.36233 3.75370 3.81677 3.93478 3.97304 4.06913 4.11203 4.23459 4.30978 4.37163 4.46830 4.49039 4.50961 4.60201 4.70166 4.76570 4.81033 4.92011 4.95518 4.99676 5.04028 5.12911 5.19907 5.30524 5.37471 5.41569 5.50430 5.51146 5.68906 5.92614 6.10180 6.13692 6.15483 6.35492 6.58569 6.89340 8.23322 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002536 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.577855 B =11037.356524 C =11487.583541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.112 3.888 3 Si 0.820 3.180 4 H -0.242 1.242 5 H -0.223 1.223 6 H -0.232 1.232 7 C -1.030 5.030 8 H 0.119 0.881 9 S 2.693 3.307 10 O -1.033 7.033 11 O -1.033 7.033 12 N -1.104 6.104 13 C 0.150 3.850 14 C -0.138 4.138 15 C 0.063 3.937 16 N -0.533 5.533 17 C 0.094 3.906 18 C -0.097 4.097 19 C -0.101 4.101 20 C -0.155 4.155 21 C 0.096 3.904 22 O -0.513 6.513 23 C -0.154 4.154 24 C -0.085 4.085 25 C 0.057 3.943 26 C -0.113 4.113 27 H 0.290 0.710 28 H 0.419 0.581 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -21.642 -9.940 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.105 4.105 3 Si 0.638 3.362 4 H -0.165 1.165 5 H -0.145 1.145 6 H -0.155 1.155 7 C -1.163 5.163 8 H 0.137 0.863 9 S 2.793 3.207 10 O -1.023 7.023 11 O -1.023 7.023 12 N -0.863 5.863 13 C 0.043 3.957 14 C -0.177 4.177 15 C -0.065 4.065 16 N -0.258 5.258 17 C -0.033 4.033 18 C -0.097 4.097 19 C -0.120 4.120 20 C -0.173 4.173 21 C 0.051 3.949 22 O -0.327 6.327 23 C -0.172 4.172 24 C -0.104 4.104 25 C -0.072 4.072 26 C -0.153 4.153 27 H 0.100 0.900 28 H 0.254 0.746 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.268 0.732 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.103 0.897 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.363 -20.596 -9.230 24.434 hybrid contribution -0.786 0.665 -0.680 1.234 sum 8.577 -19.930 -9.911 23.854 Atomic orbital electron populations 1.70002 1.07266 1.30259 1.40704 1.25074 0.95525 1.01096 0.88763 0.87562 0.82884 0.83415 0.82337 1.16518 1.14514 1.15458 1.31032 1.17533 1.01976 1.65804 0.86279 1.00595 0.76103 0.71742 0.72242 1.93432 1.85404 1.77630 1.45878 1.93372 1.84864 1.77630 1.46408 1.55055 1.73427 1.29633 1.28180 1.20898 0.96037 0.91621 0.87155 1.22188 0.97442 0.98132 0.99932 1.22022 0.94121 0.93604 0.96771 1.62111 1.02984 1.15344 1.45373 1.21119 0.94868 0.93769 0.93546 1.19842 0.97007 0.96178 0.96675 1.21133 0.93849 0.99628 0.97366 1.21545 0.97846 0.96570 1.01367 1.18651 0.86674 0.93314 0.96219 1.84778 1.30627 1.53699 1.63555 1.21607 0.94459 1.01847 0.99305 1.21101 0.96610 0.94107 0.98570 1.22169 0.93306 0.95755 0.95924 1.21851 0.96859 0.96215 1.00347 0.89984 0.74564 0.91207 0.91965 0.90026 0.94809 0.88902 0.88476 0.93382 0.85149 0.84577 0.73190 0.84306 0.84265 0.89055 0.94710 0.89729 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.69 13.96 21.45 0.30 -48.39 16 2 C 0.11 6.38 5.47 84.65 0.46 6.84 16 3 Si 0.82 41.21 26.54 68.60 1.82 43.03 16 4 H -0.24 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.22 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.23 -12.06 5.61 99.48 0.56 -11.50 16 7 C -1.03 -56.58 10.13 67.73 0.69 -55.89 16 8 H 0.12 6.53 5.94 -2.91 -0.02 6.51 16 9 S 2.69 132.83 4.22 -56.49 -0.24 132.59 16 10 O -1.03 -55.27 16.02 -128.00 -2.05 -57.32 16 11 O -1.03 -54.71 16.17 -128.00 -2.07 -56.78 16 12 N -1.10 -40.89 5.48 -169.06 -0.93 -41.82 16 13 C 0.15 4.90 2.86 45.07 0.13 5.03 16 14 C -0.14 -4.21 5.70 30.65 0.17 -4.04 16 15 C 0.06 1.55 5.42 86.33 0.47 2.01 16 16 N -0.53 -11.36 4.80 -900.91 -4.32 -15.68 16 17 C 0.09 1.58 5.43 85.56 0.46 2.04 16 18 C -0.10 -1.59 4.11 -19.85 -0.08 -1.67 16 19 C -0.10 -1.63 7.80 22.25 0.17 -1.45 16 20 C -0.15 -2.45 9.99 22.37 0.22 -2.23 16 21 C 0.10 1.55 6.71 22.51 0.15 1.70 16 22 O -0.51 -7.28 13.50 -92.44 -1.25 -8.53 16 23 C -0.15 -2.35 9.99 22.36 0.22 -2.12 16 24 C -0.09 -1.32 9.69 22.25 0.22 -1.11 16 25 C 0.06 1.26 4.58 86.32 0.40 1.66 16 26 C -0.11 -2.87 5.63 30.64 0.17 -2.70 16 27 H 0.29 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.42 13.11 8.84 -96.75 -0.86 12.26 16 29 H 0.07 2.55 7.51 -2.39 -0.02 2.53 16 30 H 0.06 2.28 5.86 -2.39 -0.01 2.26 16 31 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.09 1.99 8.12 -2.39 -0.02 1.97 16 34 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.05 0.79 8.02 -2.39 -0.02 0.77 16 36 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.41 1.68 9.06 -74.06 -0.67 1.01 16 39 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.09 1.89 5.65 -2.39 -0.01 1.88 16 42 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.45 362.36 -5.52 -76.97 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.64 Total: 27.85 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 3.86 Total: -51.93 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -4.95 Total: -105.88 kcal Atomic # 8 Polarization: -117.25 SS G_CDS: -5.37 Total: -122.62 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.82 Total: 43.03 kcal Atomic # 16 Polarization: 132.83 SS G_CDS: -0.24 Total: 132.59 kcal Total: -71.45 -5.52 -76.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.698 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds