Wall clock time and date at job start Tue Mar 31 2020 23:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48505 * 109.47138 * 265.20491 * 3 2 1 5 5 H 1.48498 * 109.46999 * 25.20768 * 3 2 1 6 6 H 1.48500 * 109.47165 * 145.20964 * 3 2 1 7 7 C 1.37874 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00082 * 5.17775 * 7 2 1 9 9 C 1.50698 * 120.00161 * 185.17163 * 7 2 1 10 10 N 1.46498 * 109.47057 * 174.88198 * 9 7 2 11 11 C 1.46501 * 120.00070 * 274.20275 * 10 9 7 12 12 C 1.50706 * 109.46715 * 83.08827 * 11 10 9 13 13 C 1.38677 * 120.41648 * 272.22003 * 12 11 10 14 14 C 1.38630 * 118.41932 * 179.78439 * 13 12 11 15 15 C 1.38221 * 119.16060 * 0.51623 * 14 13 12 16 16 N 1.31858 * 120.76585 * 359.72705 * 15 14 13 17 17 C 1.31893 * 121.72225 * 359.97438 * 16 15 14 18 18 S 1.65602 * 120.00143 * 94.20686 * 10 9 7 19 19 O 1.42107 * 104.27621 * 211.88207 * 18 10 9 20 20 O 1.42090 * 104.28005 * 339.73912 * 18 10 9 21 21 C 1.81398 * 104.45151 * 95.81307 * 18 10 9 22 22 C 1.53179 * 109.54174 * 299.91484 * 21 18 10 23 23 C 1.53098 * 109.16383 * 183.14954 * 22 21 18 24 24 O 1.42907 * 109.41146 * 57.60775 * 23 22 21 25 25 C 1.42900 * 114.09752 * 298.84507 * 24 23 22 26 26 C 1.53086 * 109.42033 * 61.15901 * 25 24 23 27 27 H 0.96996 * 119.99687 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47213 * 294.87699 * 9 7 2 29 29 H 1.08997 * 109.47417 * 54.87975 * 9 7 2 30 30 H 1.09002 * 109.47536 * 203.08705 * 11 10 9 31 31 H 1.09001 * 109.47233 * 323.09278 * 11 10 9 32 32 H 1.07999 * 120.79205 * 0.02949 * 13 12 11 33 33 H 1.07997 * 120.41665 * 180.22338 * 14 13 12 34 34 H 1.08003 * 119.62187 * 179.74788 * 15 14 13 35 35 H 1.07994 * 119.61394 * 179.97438 * 17 16 15 36 36 H 1.09000 * 109.54314 * 60.17492 * 21 18 10 37 37 H 1.08996 * 109.52145 * 303.06004 * 22 21 18 38 38 H 1.09006 * 109.52006 * 63.24571 * 22 21 18 39 39 H 1.08992 * 109.48089 * 297.62786 * 23 22 21 40 40 H 1.09001 * 109.47555 * 177.59087 * 23 22 21 41 41 H 1.08998 * 109.47669 * 301.16805 * 25 24 23 42 42 H 1.09003 * 109.48515 * 181.15239 * 25 24 23 43 43 H 1.08996 * 109.52306 * 182.48496 * 26 25 24 44 44 H 1.08997 * 109.52262 * 62.29599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5980 1.9879 -1.3952 5 1 1.3996 2.6798 0.5963 6 1 3.4924 1.4716 0.7988 7 6 2.0045 -1.1940 0.0005 8 1 1.4678 -2.1275 -0.0835 9 6 3.5069 -1.1966 0.1182 10 7 3.9865 -2.5773 0.2176 11 6 4.0402 -3.2419 1.5221 12 6 2.6809 -3.7993 1.8581 13 6 1.7420 -3.0144 2.5104 14 6 0.5031 -3.5675 2.7952 15 6 0.2505 -4.8770 2.4319 16 7 1.1694 -5.5956 1.8171 17 6 2.3564 -5.1004 1.5250 18 16 4.4681 -3.3867 -1.1445 19 8 4.1368 -4.7434 -0.8815 20 8 3.8535 -2.6759 -2.2103 21 6 6.2684 -3.1682 -1.1882 22 6 6.6015 -1.6751 -1.2656 23 6 8.1185 -1.5039 -1.3814 24 8 8.5894 -2.2084 -2.5321 25 6 8.3478 -3.6163 -2.4937 26 6 6.8402 -3.8723 -2.4226 27 1 -0.4849 0.8400 -0.0004 28 1 3.9412 -0.7238 -0.7627 29 1 3.8025 -0.6442 1.0100 30 1 4.7671 -4.0535 1.4868 31 1 4.3363 -2.5218 2.2849 32 1 1.9690 -1.9953 2.7863 33 1 -0.2534 -2.9841 3.2989 34 1 -0.7107 -5.3167 2.6539 35 1 3.0837 -5.7196 1.0211 36 1 6.7095 -3.5953 -0.2876 37 1 6.1179 -1.2388 -2.1396 38 1 6.2463 -1.1754 -0.3643 39 1 8.5986 -1.9041 -0.4886 40 1 8.3583 -0.4452 -1.4799 41 1 8.8311 -4.0441 -1.6153 42 1 8.7532 -4.0795 -3.3933 43 1 6.6558 -4.9440 -2.3487 44 1 6.3615 -3.4804 -3.3199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259909831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:16 Heat of formation + Delta-G solvation = -75.001826 kcal Electronic energy + Delta-G solvation = -29242.353650 eV Core-core repulsion = 25287.225751 eV Total energy + Delta-G solvation = -3955.127900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.54048 -39.38882 -36.70543 -36.18537 -35.40740 -34.01524 -32.66627 -31.80843 -31.34157 -30.89341 -28.09869 -25.66528 -25.32412 -23.84496 -22.91239 -22.18663 -21.42184 -20.67697 -18.44223 -17.29671 -17.14059 -16.68274 -16.42411 -16.23216 -15.88277 -15.64679 -15.36524 -14.99748 -14.77781 -14.51489 -14.11228 -13.94491 -13.66393 -13.20890 -12.97021 -12.68412 -12.57186 -12.43247 -12.33477 -12.11103 -11.89000 -11.79574 -11.60864 -11.56017 -11.37736 -11.16842 -11.09278 -11.03210 -10.76978 -10.52019 -10.41324 -10.29697 -9.67443 -9.53935 -9.05811 -8.89715 -8.61106 -8.45611 -8.14009 -6.11051 -4.08815 0.57088 1.71279 2.01462 3.12394 3.20576 3.26406 3.31453 3.66865 4.10640 4.15983 4.33225 4.36262 4.48030 4.69077 4.77554 4.90281 4.96265 5.02591 5.04843 5.18942 5.20248 5.24895 5.33620 5.40550 5.42930 5.46242 5.55059 5.63422 5.68462 5.76099 5.77702 5.89799 5.95517 6.04880 6.21316 6.44088 6.58633 6.81978 6.89835 6.95869 7.01506 7.18808 7.35701 7.52739 8.45747 8.57667 8.97694 9.47370 11.01804 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010649 B = 0.005562 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.824999 B = 5032.514050 C = 6891.130726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.223 3.777 10 N -0.975 5.975 11 C 0.180 3.820 12 C -0.153 4.153 13 C -0.015 4.015 14 C -0.174 4.174 15 C 0.090 3.910 16 N -0.500 5.500 17 C 0.111 3.889 18 S 2.605 3.395 19 O -0.960 6.960 20 O -0.930 6.930 21 C -0.606 4.606 22 C -0.141 4.141 23 C 0.069 3.931 24 O -0.381 6.381 25 C 0.071 3.929 26 C -0.144 4.144 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 -5.266 3.634 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.691 3.309 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.812 5.812 11 C 0.053 3.947 12 C -0.157 4.157 13 C -0.042 4.042 14 C -0.194 4.194 15 C -0.067 4.067 16 N -0.208 5.208 17 C -0.046 4.046 18 S 2.697 3.303 19 O -0.951 6.951 20 O -0.920 6.920 21 C -0.712 4.712 22 C -0.179 4.179 23 C -0.008 4.008 24 O -0.300 6.300 25 C -0.006 4.006 26 C -0.183 4.183 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.416 -6.350 2.654 15.975 hybrid contribution 0.677 2.060 0.631 2.258 sum 15.093 -4.290 3.285 16.031 Atomic orbital electron populations 1.69899 1.06086 1.26794 1.50098 1.24837 0.94668 0.98510 0.94770 0.87084 0.80254 0.84468 0.79058 1.19787 1.21169 1.19102 1.21313 0.89283 0.95037 1.50388 0.90255 1.19536 0.96673 0.76599 0.97148 1.57368 1.77496 1.26345 1.20041 1.19885 0.92962 0.95917 0.85906 1.21056 0.98610 0.95417 1.00602 1.21394 0.92062 0.98603 0.92145 1.22010 0.97943 0.96549 1.02924 1.22607 0.97837 0.91606 0.94609 1.67652 1.02078 1.38674 1.12440 1.22780 0.93586 0.93293 0.94973 1.05400 0.76446 0.74129 0.74361 1.93530 1.81488 1.35293 1.84750 1.93626 1.71441 1.73102 1.53827 1.30769 1.29744 1.04384 1.06327 1.22011 0.99022 0.91702 1.05205 1.22516 0.92354 0.97475 0.88466 1.87935 1.80344 1.19373 1.42344 1.22453 0.93425 0.82366 1.02388 1.21998 0.98970 1.01078 0.96272 0.92626 0.94933 0.94828 0.90609 0.89806 0.84766 0.85461 0.83747 0.82502 0.85106 0.89019 0.88902 0.92942 0.88267 0.92839 0.88311 0.89342 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.86 19.91 27.48 -169.99 -4.67 15.24 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -5.55 6.57 56.52 0.37 -5.18 16 7 C -0.52 -13.73 8.25 -34.44 -0.28 -14.01 16 8 H 0.08 2.40 7.49 -52.48 -0.39 2.01 16 9 C 0.22 4.70 3.61 -5.20 -0.02 4.68 16 10 N -0.98 -17.44 2.51 -116.94 -0.29 -17.74 16 11 C 0.18 2.71 5.46 -5.19 -0.03 2.68 16 12 C -0.15 -2.75 4.92 -104.48 -0.51 -3.27 16 13 C -0.02 -0.28 8.19 -39.27 -0.32 -0.61 16 14 C -0.17 -3.10 10.11 -39.44 -0.40 -3.50 16 15 C 0.09 1.60 11.18 -17.55 -0.20 1.40 16 16 N -0.50 -9.73 10.36 -13.25 -0.14 -9.87 16 17 C 0.11 2.10 10.28 -17.55 -0.18 1.92 16 18 S 2.61 45.58 4.75 -107.50 -0.51 45.07 16 19 O -0.96 -18.00 15.37 -57.54 -0.88 -18.88 16 20 O -0.93 -20.56 16.60 -57.54 -0.96 -21.52 16 21 C -0.61 -7.35 2.94 -26.55 -0.08 -7.43 16 22 C -0.14 -1.70 5.16 -26.59 -0.14 -1.84 16 23 C 0.07 0.71 6.84 37.21 0.25 0.96 16 24 O -0.38 -4.48 10.77 -35.23 -0.38 -4.86 16 25 C 0.07 0.68 6.84 37.20 0.25 0.94 16 26 C -0.14 -1.60 5.43 -26.60 -0.14 -1.75 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.69 6.82 -51.93 -0.35 0.34 16 29 H 0.03 0.66 6.97 -51.93 -0.36 0.29 16 30 H 0.08 0.89 7.64 -51.93 -0.40 0.50 16 31 H 0.08 1.06 7.99 -51.93 -0.41 0.64 16 32 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 33 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 34 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.16 2.83 6.84 -52.49 -0.36 2.47 16 36 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.25 8.02 -51.93 -0.42 0.84 16 38 H 0.09 1.04 7.46 -51.93 -0.39 0.65 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -35.06 366.00 -9.91 -44.97 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.48 Total: 5.28 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.89 Total: -17.86 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.34 Total: -52.94 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -2.22 Total: -45.26 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Atomic # 16 Polarization: 45.58 SS G_CDS: -0.51 Total: 45.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.06 -9.91 -44.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259909831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.034 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds