Wall clock time and date at job start Tue Mar 31 2020 23:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00133 * 2 1 4 4 H 1.48497 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47028 * 300.00151 * 3 2 1 6 6 H 1.48497 * 109.47138 * 59.99929 * 3 2 1 7 7 C 1.37877 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.53505 * 114.20680 * 179.97438 * 9 7 2 11 11 N 1.47071 * 87.98059 * 139.85570 * 10 9 7 12 12 C 1.34779 * 136.05461 * 152.85206 * 11 10 9 13 13 O 1.21281 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99793 * 180.27038 * 12 11 10 15 15 H 1.08993 * 108.93461 * 338.14079 * 14 12 11 16 16 C 1.53282 * 108.95920 * 219.50617 * 14 12 11 17 17 C 1.55268 * 109.01311 * 209.46061 * 16 14 12 18 18 S 1.84157 * 100.99572 * 40.97612 * 17 16 14 19 19 C 1.52586 * 108.96049 * 96.90079 * 14 12 11 20 20 C 1.52721 * 116.52544 * 354.22003 * 19 14 12 21 21 N 1.47828 * 85.70394 * 218.51512 * 20 19 14 22 22 C 1.34779 * 134.36775 * 203.76926 * 21 20 19 23 23 O 1.21277 * 119.99709 * 179.97438 * 22 21 20 24 24 C 1.50697 * 119.99915 * 359.94498 * 22 21 20 25 25 O 1.42898 * 109.46935 * 180.02562 * 24 22 21 26 26 C 1.47827 * 91.26796 * 23.72713 * 21 20 19 27 27 C 1.47063 * 87.88570 * 333.10081 * 11 10 9 28 28 H 0.97006 * 120.00448 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.28081 * 46.93468 * 9 7 2 30 30 H 1.08997 * 113.46436 * 25.07801 * 10 9 7 31 31 H 1.08994 * 113.52188 * 254.64134 * 10 9 7 32 32 H 1.09004 * 109.59752 * 329.40640 * 16 14 12 33 33 H 1.09003 * 109.59572 * 89.51721 * 16 14 12 34 34 H 1.09005 * 111.11294 * 283.04601 * 17 16 14 35 35 H 1.08995 * 111.11624 * 158.90972 * 17 16 14 36 36 H 1.09003 * 113.83636 * 332.70284 * 20 19 14 37 37 H 1.08999 * 113.83799 * 104.32427 * 20 19 14 38 38 H 1.09001 * 109.47220 * 299.99956 * 24 22 21 39 39 H 1.08997 * 109.47288 * 60.00442 * 24 22 21 40 40 H 0.96707 * 113.99928 * 179.97438 * 25 24 22 41 41 H 1.08999 * 113.83394 * 222.08573 * 26 21 20 42 42 H 1.08997 * 113.94925 * 90.48131 * 26 21 20 43 43 H 1.09005 * 113.46390 * 141.68352 * 27 11 10 44 44 H 1.08998 * 113.47067 * 272.11738 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7442 0.0005 11 7 1.2072 -4.3593 0.9481 12 6 0.8309 -5.6139 1.2660 13 8 1.3262 -6.5597 0.6906 14 6 -0.2100 -5.8411 2.3319 15 1 -0.2514 -4.9646 2.9784 16 6 0.1947 -7.0577 3.1719 17 6 -1.0866 -7.7459 3.7153 18 16 -2.1895 -7.6472 2.2438 19 6 -1.5693 -6.0300 1.6650 20 6 -1.6225 -5.8200 0.1532 21 7 -2.9345 -5.1849 0.3994 22 6 -4.0350 -4.9743 -0.3496 23 8 -4.9953 -4.4093 0.1293 24 6 -4.0719 -5.4404 -1.7822 25 8 -5.3346 -5.1035 -2.3602 26 6 -2.5588 -4.8737 1.7949 27 6 0.8522 -3.0028 1.3917 28 1 -0.4851 0.8401 0.0004 29 1 0.4438 -2.5305 -0.7313 30 1 3.1372 -3.5666 0.4243 31 1 2.1885 -4.2519 -0.9632 32 1 0.7524 -7.7604 2.5527 33 1 0.8181 -6.7351 4.0058 34 1 -1.5035 -7.1917 4.5563 35 1 -0.8895 -8.7823 3.9895 36 1 -0.8643 -5.1331 -0.2230 37 1 -1.6819 -6.7462 -0.4184 38 1 -3.2743 -4.9534 -2.3433 39 1 -3.9329 -6.5209 -1.8165 40 1 -5.4290 -5.3739 -3.2839 41 1 -3.3555 -5.0548 2.5164 42 1 -2.0847 -3.9001 1.9189 43 1 -0.2092 -2.8808 1.6081 44 1 1.4917 -2.6258 2.1897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:47 Heat of formation + Delta-G solvation = -33.195443 kcal Electronic energy + Delta-G solvation = -28518.964551 eV Core-core repulsion = 24565.649512 eV Total energy + Delta-G solvation = -3953.315039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.00437 -39.56556 -38.24504 -37.32302 -36.24231 -34.82761 -32.81229 -30.76699 -29.67184 -28.12785 -26.69885 -26.25649 -25.16893 -25.07931 -22.86218 -21.56198 -19.93568 -19.21617 -18.28402 -17.95917 -17.26938 -16.77394 -16.60212 -16.51735 -16.15682 -15.62837 -15.46838 -15.28710 -14.81002 -14.42646 -14.08929 -13.92749 -13.50268 -13.44518 -13.11088 -12.94053 -12.82781 -12.41501 -12.33592 -12.06569 -12.02181 -11.71502 -11.70173 -11.47053 -11.30099 -11.08535 -10.91959 -10.88676 -10.46803 -10.34914 -10.18643 -9.75322 -9.68916 -9.37765 -9.13723 -8.76896 -8.69896 -8.09268 -7.87141 -6.28274 -4.35039 1.52200 2.03424 2.47748 2.65442 2.85135 3.16455 3.20832 3.27157 3.29941 3.88710 4.01659 4.23650 4.25429 4.51692 4.61481 4.71051 4.79712 4.92526 4.98867 5.00535 5.05750 5.10994 5.16735 5.28211 5.36948 5.41300 5.48911 5.56201 5.64416 5.67778 5.84666 5.93902 5.99757 6.08829 6.27342 6.37178 6.44101 6.64124 7.37219 7.40159 7.58296 7.68353 8.04390 8.17341 8.25037 8.47937 8.69658 9.33247 10.81056 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.004334 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.124579 B = 6459.244765 C = 8444.220293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.037 3.963 10 C 0.100 3.900 11 N -0.642 5.642 12 C 0.539 3.461 13 O -0.551 6.551 14 C -0.099 4.099 15 H 0.102 0.898 16 C -0.114 4.114 17 C -0.073 4.073 18 S -0.230 6.230 19 C -0.043 4.043 20 C 0.125 3.875 21 N -0.640 5.640 22 C 0.540 3.460 23 O -0.519 6.519 24 C 0.065 3.935 25 O -0.548 6.548 26 C 0.133 3.867 27 C 0.095 3.905 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -13.137 3.607 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.018 3.982 10 C -0.022 4.022 11 N -0.375 5.375 12 C 0.327 3.673 13 O -0.431 6.431 14 C -0.122 4.122 15 H 0.120 0.880 16 C -0.153 4.153 17 C -0.221 4.221 18 S 0.000 6.000 19 C -0.154 4.154 20 C 0.001 3.999 21 N -0.378 5.378 22 C 0.329 3.671 23 O -0.393 6.393 24 C -0.016 4.016 25 O -0.352 6.352 26 C 0.009 3.991 27 C -0.027 4.027 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.752 -13.921 3.646 14.872 hybrid contribution 1.526 1.572 0.022 2.191 sum -2.226 -12.349 3.668 13.073 Atomic orbital electron populations 1.69938 1.06055 1.27278 1.48635 1.25020 0.94841 0.99448 0.94077 0.86495 0.80172 0.83317 0.77824 1.19539 1.20824 1.20850 1.20898 0.93042 0.89389 1.52473 0.91729 1.20268 0.94640 0.91323 0.91971 1.23396 0.94429 0.92987 0.91388 1.50148 1.42073 1.04733 1.40533 1.19574 0.82765 0.81536 0.83393 1.90666 1.57557 1.40734 1.54135 1.21538 0.92135 1.01668 0.96903 0.88011 1.22403 0.97361 0.96066 0.99504 1.24430 0.95643 1.04831 0.97226 1.87663 1.54478 1.24704 1.33140 1.24194 0.95683 0.96215 0.99316 1.23307 0.84485 0.98497 0.93613 1.49841 1.13812 1.60102 1.14034 1.19888 0.81397 0.78866 0.86933 1.90725 1.34543 1.41237 1.72813 1.21745 0.87758 1.00026 0.92035 1.86569 1.33725 1.84081 1.30870 1.23359 0.95124 0.96835 0.83787 1.23673 0.99741 0.76668 1.02656 0.92516 0.91526 0.90653 0.92313 0.88332 0.89614 0.88776 0.87179 0.87520 0.88701 0.90212 0.90670 0.76751 0.88502 0.88024 0.92281 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.08 13.26 55.43 0.74 -22.34 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -12.34 8.84 -34.44 -0.30 -12.65 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 0.78 3.76 -91.39 -0.34 0.44 16 10 C 0.10 1.83 8.19 -8.50 -0.07 1.76 16 11 N -0.64 -10.98 3.33 -185.38 -0.62 -11.60 16 12 C 0.54 8.65 4.84 -10.98 -0.05 8.60 16 13 O -0.55 -10.29 16.63 5.56 0.09 -10.20 16 14 C -0.10 -1.25 2.76 -91.84 -0.25 -1.50 16 15 H 0.10 1.19 7.46 -51.93 -0.39 0.80 16 16 C -0.11 -1.21 5.80 -25.38 -0.15 -1.35 16 17 C -0.07 -0.66 7.53 38.36 0.29 -0.37 16 18 S -0.23 -2.81 22.56 -107.50 -2.43 -5.24 16 19 C -0.04 -0.55 1.34 -91.30 -0.12 -0.67 16 20 C 0.13 1.73 7.10 -3.46 -0.02 1.71 16 21 N -0.64 -9.60 3.62 -185.10 -0.67 -10.27 16 22 C 0.54 9.08 8.13 -10.99 -0.09 8.99 16 23 O -0.52 -10.94 17.22 -14.35 -0.25 -11.19 16 24 C 0.07 0.82 7.27 36.00 0.26 1.08 16 25 O -0.55 -7.24 13.19 -55.14 -0.73 -7.96 16 26 C 0.13 1.83 8.05 -3.45 -0.03 1.81 16 27 C 0.09 1.74 7.65 -8.64 -0.07 1.67 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 30 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.22 6.96 -51.93 -0.36 0.86 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.65 6.41 -51.93 -0.33 1.32 16 37 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.39 2.68 9.12 45.56 0.42 3.09 16 41 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.10 1.42 7.22 -51.93 -0.37 1.04 16 43 H 0.06 1.07 7.23 -51.93 -0.38 0.70 16 44 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.23 377.30 -9.84 -42.08 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.60 Total: 5.57 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -1.05 Total: 11.16 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.55 Total: -44.20 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.88 Total: -29.35 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.43 Total: -5.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.23 -9.84 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.882 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds