Wall clock time and date at job start Tue Mar 31 2020 23:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.99073 * 2 1 4 4 C 1.38224 * 120.02464 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.01313 * 0.23958 * 4 3 2 6 6 C 1.38328 * 119.98312 * 359.46435 * 5 4 3 7 7 Cl 1.73603 * 120.01182 * 180.28262 * 6 5 4 8 8 C 1.38190 * 119.99252 * 179.97438 * 2 1 3 9 9 C 1.50695 * 120.00881 * 359.97438 * 8 2 1 10 10 C 1.50702 * 109.46945 * 90.00099 * 9 8 2 11 11 O 1.21281 * 120.00050 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99535 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00489 * 0.02562 * 12 10 9 14 14 C 1.52998 * 109.47495 * 90.00037 * 13 12 10 15 15 O 1.42902 * 109.46981 * 64.99828 * 14 13 12 16 16 C 1.46505 * 119.99551 * 180.02562 * 12 10 9 17 17 C 1.53001 * 109.47192 * 89.99843 * 16 12 10 18 18 N 1.46495 * 109.47196 * 179.97438 * 17 16 12 19 19 C 1.36933 * 120.00309 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00399 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47413 * 59.99990 * 23 21 19 25 25 H 1.48507 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47330 * 299.99849 * 23 21 19 27 27 H 1.08996 * 109.46574 * 89.99966 * 1 2 3 28 28 H 1.08997 * 109.46993 * 209.99756 * 1 2 3 29 29 H 1.08993 * 109.47306 * 330.00150 * 1 2 3 30 30 H 1.07996 * 119.98722 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99032 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.00970 * 179.74649 * 5 4 3 33 33 H 1.08997 * 109.47571 * 210.00166 * 9 8 2 34 34 H 1.09004 * 109.47412 * 330.00083 * 9 8 2 35 35 H 1.09002 * 109.47617 * 210.00084 * 13 12 10 36 36 H 1.09001 * 109.47095 * 329.99600 * 13 12 10 37 37 H 1.08995 * 109.47222 * 185.00260 * 14 13 12 38 38 H 1.09001 * 109.46805 * 305.00153 * 14 13 12 39 39 H 0.96703 * 113.99476 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47048 * 210.00061 * 16 12 10 41 41 H 1.08999 * 109.47268 * 329.99812 * 16 12 10 42 42 H 1.09003 * 109.47302 * 300.00062 * 17 16 12 43 43 H 1.09005 * 109.46975 * 60.00247 * 17 16 12 44 44 H 0.97006 * 120.00363 * 0.02562 * 18 17 16 45 45 H 0.97000 * 119.99797 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0005 5 6 4.2726 0.0017 -0.0061 6 6 3.5816 -1.1966 0.0001 7 17 4.4502 -2.6997 0.0006 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5019 0.0017 10 6 1.1927 -2.9379 -1.4188 11 8 1.5869 -2.2562 -2.3412 12 7 0.5297 -4.0854 -1.6639 13 6 0.0531 -4.9085 -0.5498 14 6 -1.3616 -4.4733 -0.1627 15 8 -2.2561 -4.7455 -1.2434 16 6 0.2855 -4.5095 -3.0448 17 6 1.4494 -5.3790 -3.5247 18 7 1.2050 -5.8036 -4.9053 19 6 2.1173 -6.5957 -5.5498 20 1 3.0172 -6.9071 -5.0404 21 6 1.8859 -6.9976 -6.8582 22 7 0.7893 -6.6177 -7.4792 23 14 3.1307 -8.0776 -7.7375 24 1 3.2926 -9.3527 -6.9939 25 1 2.6527 -8.3640 -9.1141 26 1 4.4369 -7.3741 -7.8040 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6578 2.1326 -0.0004 31 1 4.1197 2.1341 -0.0010 32 1 5.3526 0.0025 -0.0106 33 1 2.0336 -3.2612 0.5158 34 1 0.4921 -2.3713 0.5158 35 1 0.0414 -5.9561 -0.8509 36 1 0.7183 -4.7836 0.3047 37 1 -1.6820 -5.0240 0.7216 38 1 -1.3668 -3.4049 0.0530 39 1 -3.1732 -4.4940 -1.0677 40 1 -0.6399 -5.0837 -3.0903 41 1 0.2000 -3.6314 -3.6849 42 1 2.3748 -4.8047 -3.4792 43 1 1.5349 -6.2572 -2.8846 44 1 0.3968 -5.5236 -5.3630 45 1 0.6278 -6.8982 -8.3936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272201868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:52 Heat of formation + Delta-G solvation = -53.327772 kcal Electronic energy + Delta-G solvation = -27648.153942 eV Core-core repulsion = 23691.922193 eV Total energy + Delta-G solvation = -3956.231749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46861 -39.19395 -37.17951 -36.59398 -35.52452 -34.28101 -33.65332 -32.18468 -31.36467 -29.47856 -28.62745 -27.32456 -26.54032 -23.64608 -23.17539 -22.36250 -21.65232 -20.97844 -18.90190 -17.86920 -17.14149 -16.86480 -16.77985 -16.53255 -15.99020 -15.44661 -14.92650 -14.65506 -14.40920 -14.14333 -13.76962 -13.69388 -13.48576 -13.39834 -13.22345 -13.02238 -12.93679 -12.78511 -12.58875 -12.42681 -12.27715 -11.63143 -11.52458 -11.40922 -11.30814 -11.10936 -10.87937 -10.81987 -10.81499 -10.53197 -10.20550 -10.07107 -9.72712 -9.59499 -8.86004 -8.77749 -8.77145 -8.41262 -6.82931 -5.67121 -2.95602 0.98242 1.05403 2.04012 2.79368 3.07762 3.46439 3.50834 3.54425 3.56310 4.06438 4.34264 4.48043 4.57621 4.67279 4.69197 4.74212 4.91548 4.95585 5.01542 5.12205 5.13576 5.22682 5.29456 5.34811 5.42136 5.51322 5.57587 5.63225 5.66288 5.85032 5.88132 6.01322 6.03920 6.14147 6.17747 6.28719 6.32310 6.60966 6.67725 6.87199 7.06058 7.45648 7.62937 7.78171 8.37994 8.51795 9.62222 10.20051 10.55403 11.55915 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.003209 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.418932 B = 8722.025298 C =10071.393318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.117 4.117 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.017 4.017 7 Cl -0.065 7.065 8 C -0.056 4.056 9 C -0.112 4.112 10 C 0.515 3.485 11 O -0.520 6.520 12 N -0.599 5.599 13 C 0.104 3.896 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.114 3.886 17 C 0.143 3.857 18 N -0.729 5.729 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.377 0.623 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.021 0.979 43 H 0.015 0.985 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 14.242 25.291 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.124 4.124 5 C -0.135 4.135 6 C -0.043 4.043 7 Cl -0.036 7.036 8 C -0.057 4.057 9 C -0.152 4.152 10 C 0.302 3.698 11 O -0.395 6.395 12 N -0.332 5.332 13 C -0.020 4.020 14 C -0.021 4.021 15 O -0.365 6.365 16 C -0.008 4.008 17 C 0.014 3.986 18 N -0.374 5.374 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.223 0.777 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.869 14.143 24.458 28.314 hybrid contribution 0.070 -0.536 -0.355 0.647 sum -1.799 13.607 24.103 27.737 Atomic orbital electron populations 1.20881 0.90760 1.02641 1.03118 1.19632 0.96211 0.91858 0.98345 1.21058 0.94264 0.97508 1.00682 1.21061 0.94234 0.97525 0.99549 1.20991 1.00423 0.90717 1.01373 1.20769 0.91705 0.87616 1.04234 1.98381 1.76181 1.32275 1.96733 1.18961 0.91300 0.94353 1.01059 1.20869 1.02044 0.95761 0.96488 1.20242 0.78151 0.80909 0.90524 1.90758 1.49474 1.53373 1.45877 1.47776 1.56014 1.21997 1.07441 1.21712 0.92774 0.97233 0.90268 1.22700 0.90959 0.98911 0.89533 1.86616 1.21669 1.87055 1.41199 1.21689 0.99251 0.99737 0.80159 1.20911 0.95392 0.94696 0.87557 1.42193 1.25179 1.60698 1.09310 1.19170 1.00099 1.22328 0.95106 0.91349 1.24734 0.97853 1.01430 0.97029 1.69659 1.26165 1.49994 1.12477 0.86249 0.80688 0.80355 0.78802 1.21314 1.21667 1.21290 0.90382 0.91438 0.91174 0.85470 0.85177 0.84993 0.87706 0.87794 0.88830 0.89157 0.92740 0.93850 0.77686 0.89538 0.90190 0.96150 0.96702 0.78255 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.61 36.01 0.35 -0.63 16 2 C -0.06 -0.64 5.88 -104.63 -0.62 -1.26 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -0.99 10.05 -39.59 -0.40 -1.38 16 5 C -0.12 -1.26 9.83 -39.55 -0.39 -1.65 16 6 C -0.02 -0.21 6.31 -39.50 -0.25 -0.46 16 7 Cl -0.06 -0.83 27.30 -51.86 -1.42 -2.25 16 8 C -0.06 -0.67 4.38 -104.59 -0.46 -1.13 16 9 C -0.11 -1.23 3.58 -29.04 -0.10 -1.34 16 10 C 0.51 7.90 7.67 -10.98 -0.08 7.82 16 11 O -0.52 -10.42 15.61 5.56 0.09 -10.33 16 12 N -0.60 -8.86 2.44 -173.69 -0.42 -9.28 16 13 C 0.10 1.09 5.62 -4.05 -0.02 1.07 16 14 C 0.06 0.48 7.38 37.16 0.27 0.75 16 15 O -0.56 -5.90 12.48 -35.23 -0.44 -6.34 16 16 C 0.11 2.14 5.34 -4.04 -0.02 2.12 16 17 C 0.14 3.25 6.58 -4.04 -0.03 3.23 16 18 N -0.73 -20.12 5.60 -59.91 -0.34 -20.45 16 19 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -29.51 13.06 55.49 0.72 -28.79 16 23 Si 0.91 23.45 29.55 -169.99 -5.02 18.43 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.10 1.04 6.17 -51.93 -0.32 0.72 16 34 H 0.10 0.83 5.07 -51.93 -0.26 0.56 16 35 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.09 0.69 6.44 -51.93 -0.33 0.35 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.04 0.31 7.30 -51.93 -0.38 -0.07 16 39 H 0.38 2.25 9.12 45.56 0.42 2.67 16 40 H 0.09 1.61 7.11 -51.93 -0.37 1.24 16 41 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 11.00 7.67 -40.82 -0.31 10.69 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -37.92 386.06 -8.99 -46.91 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.60 Total: 8.38 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.38 Total: -2.10 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.03 Total: -58.52 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.35 Total: -16.67 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.42 Total: -2.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.92 -8.99 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272201868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.415 kcal (2) G-P(sol) polarization free energy of solvation -37.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds