Wall clock time and date at job start Tue Mar 31 2020 23:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.99073 * 2 1 4 4 C 1.38224 * 120.02464 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.01313 * 0.23958 * 4 3 2 6 6 C 1.38328 * 119.98312 * 359.46435 * 5 4 3 7 7 Cl 1.73603 * 120.01182 * 180.28262 * 6 5 4 8 8 C 1.38190 * 119.99252 * 179.97438 * 2 1 3 9 9 C 1.50695 * 120.00881 * 359.97438 * 8 2 1 10 10 C 1.50702 * 109.46945 * 90.00099 * 9 8 2 11 11 O 1.21281 * 120.00050 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99535 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00489 * 0.02562 * 12 10 9 14 14 C 1.52998 * 109.47495 * 90.00037 * 13 12 10 15 15 O 1.42902 * 109.46981 * 64.99828 * 14 13 12 16 16 C 1.46505 * 119.99551 * 180.02562 * 12 10 9 17 17 C 1.53001 * 109.47192 * 89.99843 * 16 12 10 18 18 N 1.46495 * 109.47196 * 179.97438 * 17 16 12 19 19 C 1.36933 * 120.00309 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00399 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99639 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47413 * 59.99990 * 23 21 19 25 25 H 1.48507 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47330 * 299.99849 * 23 21 19 27 27 H 1.08996 * 109.46574 * 89.99966 * 1 2 3 28 28 H 1.08997 * 109.46993 * 209.99756 * 1 2 3 29 29 H 1.08993 * 109.47306 * 330.00150 * 1 2 3 30 30 H 1.07996 * 119.98722 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99032 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.00970 * 179.74649 * 5 4 3 33 33 H 1.08997 * 109.47571 * 210.00166 * 9 8 2 34 34 H 1.09004 * 109.47412 * 330.00083 * 9 8 2 35 35 H 1.09002 * 109.47617 * 210.00084 * 13 12 10 36 36 H 1.09001 * 109.47095 * 329.99600 * 13 12 10 37 37 H 1.08995 * 109.47222 * 185.00260 * 14 13 12 38 38 H 1.09001 * 109.46805 * 305.00153 * 14 13 12 39 39 H 0.96703 * 113.99476 * 180.02562 * 15 14 13 40 40 H 1.09003 * 109.47048 * 210.00061 * 16 12 10 41 41 H 1.08999 * 109.47268 * 329.99812 * 16 12 10 42 42 H 1.09003 * 109.47302 * 300.00062 * 17 16 12 43 43 H 1.09005 * 109.46975 * 60.00247 * 17 16 12 44 44 H 0.97006 * 120.00363 * 0.02562 * 18 17 16 45 45 H 0.97000 * 119.99797 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0005 5 6 4.2726 0.0017 -0.0061 6 6 3.5816 -1.1966 0.0001 7 17 4.4502 -2.6997 0.0006 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5019 0.0017 10 6 1.1927 -2.9379 -1.4188 11 8 1.5869 -2.2562 -2.3412 12 7 0.5297 -4.0854 -1.6639 13 6 0.0531 -4.9085 -0.5498 14 6 -1.3616 -4.4733 -0.1627 15 8 -2.2561 -4.7455 -1.2434 16 6 0.2855 -4.5095 -3.0448 17 6 1.4494 -5.3790 -3.5247 18 7 1.2050 -5.8036 -4.9053 19 6 2.1173 -6.5957 -5.5498 20 1 3.0172 -6.9071 -5.0404 21 6 1.8859 -6.9976 -6.8582 22 7 0.7893 -6.6177 -7.4792 23 14 3.1307 -8.0776 -7.7375 24 1 3.2926 -9.3527 -6.9939 25 1 2.6527 -8.3640 -9.1141 26 1 4.4369 -7.3741 -7.8040 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6578 2.1326 -0.0004 31 1 4.1197 2.1341 -0.0010 32 1 5.3526 0.0025 -0.0106 33 1 2.0336 -3.2612 0.5158 34 1 0.4921 -2.3713 0.5158 35 1 0.0414 -5.9561 -0.8509 36 1 0.7183 -4.7836 0.3047 37 1 -1.6820 -5.0240 0.7216 38 1 -1.3668 -3.4049 0.0530 39 1 -3.1732 -4.4940 -1.0677 40 1 -0.6399 -5.0837 -3.0903 41 1 0.2000 -3.6314 -3.6849 42 1 2.3748 -4.8047 -3.4792 43 1 1.5349 -6.2572 -2.8846 44 1 0.3968 -5.5236 -5.3630 45 1 0.6278 -6.8982 -8.3936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272201868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:51 Heat of formation + Delta-G solvation = -80.381993 kcal Electronic energy + Delta-G solvation = -27649.327101 eV Core-core repulsion = 23691.922193 eV Total energy + Delta-G solvation = -3957.404908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48555 -40.14827 -38.07669 -37.50242 -37.08817 -35.86726 -34.55529 -33.49344 -32.83734 -30.82323 -29.60725 -28.44769 -27.60675 -25.58319 -24.00324 -23.54508 -22.95798 -22.02052 -20.10085 -19.20459 -18.66703 -17.83598 -17.74568 -17.44736 -17.09260 -16.64479 -16.23105 -15.98816 -15.52574 -15.40271 -15.17218 -15.07743 -14.75265 -14.53221 -14.44805 -14.05819 -13.88373 -13.73882 -13.50804 -13.32598 -13.21736 -13.04992 -12.89176 -12.71460 -12.49713 -12.28195 -12.23893 -12.18787 -12.13161 -12.07494 -11.89317 -11.70253 -10.99752 -10.98694 -10.78983 -9.69922 -9.66459 -9.57632 -9.09153 -7.99225 -5.30608 0.17545 0.27372 1.15238 1.43336 1.48355 1.54377 1.62586 1.95106 2.53733 2.65559 3.33069 3.44343 3.50203 3.65231 3.72801 4.00128 4.02065 4.06573 4.13591 4.19903 4.23941 4.32359 4.37291 4.41549 4.50615 4.56661 4.58334 4.59585 4.69739 4.77322 4.81106 4.87057 4.93973 5.05223 5.07724 5.22392 5.25708 5.39509 5.39755 5.53830 5.55067 5.89697 6.21732 6.43580 7.01528 7.19511 7.27404 7.98876 8.25408 9.24110 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.003209 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.418932 B = 8722.025298 C =10071.393318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.121 4.121 4 C -0.105 4.105 5 C -0.131 4.131 6 C -0.039 4.039 7 Cl -0.080 7.080 8 C -0.078 4.078 9 C -0.100 4.100 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.597 5.597 13 C 0.092 3.908 14 C 0.059 3.941 15 O -0.594 6.594 16 C 0.135 3.865 17 C 0.151 3.849 18 N -0.742 5.742 19 C -0.255 4.255 20 H 0.071 0.929 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.980 3.020 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.280 1.280 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.052 0.948 42 H -0.004 1.004 43 H 0.025 0.975 44 H 0.375 0.625 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 14.723 27.532 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.123 4.123 5 C -0.150 4.150 6 C -0.066 4.066 7 Cl -0.051 7.051 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.302 3.698 11 O -0.454 6.454 12 N -0.329 5.329 13 C -0.030 4.030 14 C -0.019 4.019 15 O -0.402 6.402 16 C 0.011 3.989 17 C 0.023 3.977 18 N -0.385 5.385 19 C -0.386 4.386 20 H 0.089 0.911 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.807 3.193 24 H -0.199 1.199 25 H -0.215 1.215 26 H -0.207 1.207 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.244 0.756 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.043 0.957 44 H 0.207 0.793 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.221 14.612 26.779 30.587 hybrid contribution 0.169 -0.611 -1.003 1.186 sum -2.052 14.001 25.777 29.405 Atomic orbital electron populations 1.20924 0.89203 1.04660 1.02460 1.20014 0.97541 0.91817 0.97813 1.21476 0.94575 0.98321 0.99525 1.21450 0.94574 0.98074 0.98160 1.21267 1.01207 0.90896 1.01605 1.21043 0.92253 0.87565 1.05705 1.98364 1.76529 1.33323 1.96911 1.19187 0.91341 0.95285 1.02099 1.20861 1.03957 0.95744 0.93337 1.21025 0.76749 0.80171 0.91887 1.90729 1.51646 1.55107 1.47942 1.47841 1.55912 1.22482 1.06706 1.22141 0.95284 0.95966 0.89611 1.22770 0.88964 1.00305 0.89872 1.86557 1.23367 1.87504 1.42795 1.21165 0.97518 0.97683 0.82493 1.20936 0.95946 0.95144 0.85662 1.42376 1.24532 1.60580 1.11025 1.19555 1.00595 1.22665 0.95815 0.91104 1.25651 0.99989 1.03067 0.97747 1.69824 1.28025 1.51243 1.12655 0.85135 0.78061 0.78724 0.77356 1.19855 1.21465 1.20665 0.92185 0.89982 0.88722 0.82793 0.82352 0.84055 0.86513 0.84264 0.89931 0.85832 0.89273 0.92367 0.75609 0.89179 0.92980 0.98572 0.95713 0.79327 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.61 71.24 0.68 -0.98 16 2 C -0.07 -1.40 5.88 -19.87 -0.12 -1.52 16 3 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 4 C -0.10 -1.77 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.76 9.83 22.29 0.22 -2.54 16 6 C -0.04 -0.97 6.31 22.32 0.14 -0.83 16 7 Cl -0.08 -2.08 27.30 -2.72 -0.07 -2.15 16 8 C -0.08 -1.81 4.38 -19.84 -0.09 -1.89 16 9 C -0.10 -2.04 3.58 29.10 0.10 -1.94 16 10 C 0.51 15.67 7.67 87.66 0.67 16.35 16 11 O -0.58 -23.90 15.61 -3.03 -0.05 -23.94 16 12 N -0.60 -17.50 2.44 -821.81 -2.00 -19.50 16 13 C 0.09 1.74 5.62 86.38 0.49 2.23 16 14 C 0.06 0.80 7.38 71.98 0.53 1.33 16 15 O -0.59 -11.54 12.48 -148.98 -1.86 -13.40 16 16 C 0.14 5.27 5.34 86.38 0.46 5.73 16 17 C 0.15 7.10 6.58 86.38 0.57 7.67 16 18 N -0.74 -42.27 5.60 -343.45 -1.92 -44.19 16 19 C -0.25 -15.53 9.99 84.04 0.84 -14.69 16 20 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 22 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 23 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 0.88 5.94 -2.39 -0.01 0.87 16 29 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 30 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.12 2.09 6.17 -2.39 -0.01 2.08 16 34 H 0.14 1.75 5.07 -2.38 -0.01 1.74 16 35 H 0.08 1.77 8.07 -2.39 -0.02 1.75 16 36 H 0.12 1.49 6.44 -2.39 -0.02 1.48 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.62 7.30 -2.39 -0.02 0.60 16 39 H 0.39 4.02 9.12 -74.05 -0.68 3.35 16 40 H 0.09 3.44 7.11 -2.39 -0.02 3.42 16 41 H 0.05 2.31 7.42 -2.39 -0.02 2.29 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.37 22.35 7.67 -92.70 -0.71 21.64 16 45 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -85.24 386.06 1.46 -83.78 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.35 Total: 29.15 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.41 Total: 1.63 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -3.64 Total: -125.57 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.91 Total: -37.34 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.15 kcal Total: -85.24 1.46 -83.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272201868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.400 kcal (2) G-P(sol) polarization free energy of solvation -85.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds