Wall clock time and date at job start Tue Mar 31 2020 23:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00276 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47236 * 120.00039 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.49532 * 300.00118 * 10 9 7 12 12 O 1.42900 * 109.47457 * 59.99841 * 11 10 9 13 13 C 1.53036 * 109.50022 * 179.97438 * 10 9 7 14 14 C 1.53113 * 109.50301 * 301.38163 * 13 10 9 15 15 C 1.53194 * 109.32842 * 298.65718 * 14 13 10 16 16 N 1.46928 * 108.77554 * 54.63226 * 15 14 13 17 17 C 1.34780 * 120.62726 * 126.41063 * 16 15 14 18 18 O 1.21283 * 120.00105 * 179.97438 * 17 16 15 19 19 C 1.50701 * 120.00027 * 359.97438 * 17 16 15 20 20 O 1.42897 * 109.47032 * 179.97438 * 19 17 16 21 21 C 1.36229 * 117.00249 * 179.97438 * 20 19 17 22 22 C 1.38665 * 122.59425 * 179.97438 * 21 20 19 23 23 C 1.33427 * 114.89116 * 179.97438 * 22 21 20 24 24 S 1.75864 * 109.65805 * 0.02562 * 23 22 21 25 25 C 1.33634 * 122.58195 * 359.70831 * 21 20 19 26 26 C 1.46922 * 118.74284 * 306.39197 * 16 15 14 27 27 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47462 * 179.97438 * 11 10 9 30 30 H 1.09004 * 109.47292 * 299.99497 * 11 10 9 31 31 H 0.96698 * 114.00317 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.46119 * 61.43406 * 13 10 9 33 33 H 1.09002 * 109.46253 * 181.39055 * 13 10 9 34 34 H 1.08993 * 109.48955 * 178.70320 * 14 13 10 35 35 H 1.08999 * 109.51457 * 58.62935 * 14 13 10 36 36 H 1.09004 * 109.58810 * 294.85122 * 15 14 13 37 37 H 1.08999 * 109.58983 * 174.42400 * 15 14 13 38 38 H 1.09002 * 109.47045 * 299.99607 * 19 17 16 39 39 H 1.09008 * 109.47241 * 59.99747 * 19 17 16 40 40 H 1.08003 * 122.54857 * 359.97438 * 22 21 20 41 41 H 1.08004 * 125.17160 * 180.02562 * 23 22 21 42 42 H 1.07998 * 125.20094 * 359.97438 * 25 21 20 43 43 H 1.08994 * 109.58498 * 293.82455 * 26 16 15 44 44 H 1.08994 * 109.70791 * 173.46418 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 2.9376 -3.7386 -1.2485 12 8 3.8665 -2.6528 -1.2487 13 6 1.0638 -4.8205 0.0012 14 6 0.1608 -4.7208 1.2337 15 6 1.0183 -4.8158 2.4995 16 7 2.0691 -3.7907 2.4370 17 6 2.2341 -2.9140 3.4472 18 8 3.1054 -2.0727 3.3839 19 6 1.3358 -2.9789 4.6555 20 8 1.7064 -1.9543 5.5801 21 6 0.9878 -1.8736 6.7347 22 6 1.2482 -0.9248 7.7118 23 6 0.4502 -0.9847 8.7795 24 16 -0.7055 -2.2954 8.5816 25 6 -0.0258 -2.6996 7.0106 26 6 2.9368 -3.7399 1.2524 27 1 -0.4850 0.8401 0.0004 28 1 0.3554 -2.3881 0.0005 29 1 3.4827 -4.6826 -1.2479 30 1 2.3111 -3.6811 -2.1386 31 1 4.4577 -2.6411 -2.0138 32 1 0.4539 -4.7776 -0.9012 33 1 1.6091 -5.7640 0.0261 34 1 -0.5620 -5.5365 1.2219 35 1 -0.3667 -3.7670 1.2223 36 1 1.4749 -5.8038 2.5583 37 1 0.3944 -4.6465 3.3771 38 1 0.3006 -2.8333 4.3469 39 1 1.4390 -3.9534 5.1331 40 1 2.0368 -0.1932 7.6158 41 1 0.5056 -0.3280 9.6352 42 1 -0.3736 -3.4947 6.3679 43 1 3.5496 -4.6402 1.2095 44 1 3.5805 -2.8619 1.3058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273930251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:07 Heat of formation + Delta-G solvation = -50.588486 kcal Electronic energy + Delta-G solvation = -28706.300938 eV Core-core repulsion = 24752.231680 eV Total energy + Delta-G solvation = -3954.069258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.23829 -39.40211 -37.67767 -35.90069 -35.66084 -33.84188 -32.27698 -31.11009 -29.25548 -29.05207 -28.28298 -25.39527 -25.04132 -23.47732 -23.33074 -21.73832 -19.79715 -19.51806 -18.45226 -18.14199 -17.26651 -16.94327 -16.44828 -16.27368 -16.11236 -15.52534 -14.92047 -14.43894 -14.23022 -14.12245 -13.94658 -13.61486 -13.55350 -13.24395 -13.04738 -12.98211 -12.65205 -12.49155 -12.24555 -12.06282 -11.77733 -11.62826 -11.20157 -10.99525 -10.88356 -10.83428 -10.66735 -10.62377 -10.45941 -10.17828 -9.72773 -9.53851 -9.23819 -8.97429 -8.92416 -8.77358 -8.09152 -8.03436 -6.79811 -5.54971 -2.80744 0.89640 1.53092 1.88070 2.68627 2.82851 3.11951 3.62619 3.65526 3.72355 3.79770 4.67166 4.75700 4.82051 4.82958 4.98468 5.03315 5.14243 5.16823 5.25088 5.32444 5.41031 5.42463 5.60442 5.61438 5.75348 5.80325 5.85626 5.88679 5.89159 6.00750 6.08258 6.13332 6.15550 6.23683 6.34548 6.59932 6.75781 6.86711 7.04460 7.29139 7.85942 8.18423 8.37828 8.62978 8.69821 9.76922 10.23708 10.59288 11.68633 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.003781 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.772027 B = 7402.810177 C = 8704.244754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.021 4.021 3 Si 0.902 3.098 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.286 1.286 7 C -0.201 4.201 8 H 0.091 0.909 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.076 3.924 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.109 3.891 16 N -0.592 5.592 17 C 0.522 3.478 18 O -0.505 6.505 19 C 0.048 3.952 20 O -0.275 6.275 21 C 0.123 3.877 22 C -0.137 4.137 23 C -0.188 4.188 24 S 0.106 5.894 25 C -0.328 4.328 26 C 0.113 3.887 27 H 0.249 0.751 28 H 0.381 0.619 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.354 0.646 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.166 0.834 43 H 0.046 0.954 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 -13.817 11.338 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.215 4.215 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.332 4.332 8 H 0.109 0.891 9 N -0.343 5.343 10 C 0.094 3.906 11 C -0.005 4.005 12 O -0.343 6.343 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.014 4.014 16 N -0.326 5.326 17 C 0.307 3.693 18 O -0.379 6.379 19 C -0.031 4.031 20 O -0.187 6.187 21 C 0.066 3.934 22 C -0.169 4.169 23 C -0.323 4.323 24 S 0.365 5.635 25 C -0.464 4.464 26 C -0.011 4.011 27 H 0.059 0.941 28 H 0.216 0.784 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.199 0.801 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.170 0.830 41 H 0.189 0.811 42 H 0.183 0.817 43 H 0.065 0.935 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.633 -13.503 12.675 18.592 hybrid contribution 1.147 1.122 -1.589 2.258 sum -0.486 -12.381 11.086 16.626 Atomic orbital electron populations 1.69642 1.05028 1.25167 1.59971 1.24644 0.95339 0.97452 1.04048 0.86312 0.78512 0.83925 0.77844 1.21656 1.22328 1.21271 1.19470 0.91926 0.83014 1.38785 0.89135 1.42414 1.05163 0.99261 1.87511 1.19955 0.90926 0.88116 0.91576 1.22751 0.91029 0.87521 0.99217 1.86884 1.50186 1.49610 1.47579 1.21628 0.97769 0.97565 0.98349 1.21883 0.97806 1.03294 0.94134 1.21688 0.89610 0.91349 0.98799 1.47626 1.34334 1.31990 1.18686 1.19631 0.84844 0.81470 0.83325 1.90749 1.33851 1.34219 1.79038 1.22527 0.99848 0.91072 0.89633 1.86243 1.54425 1.52208 1.25853 1.17956 0.92134 0.95335 0.87945 1.19538 1.03483 1.01102 0.92782 1.25475 1.00378 1.03501 1.02978 1.84025 1.35795 1.29184 1.14454 1.25302 1.06414 1.10530 1.04105 1.22130 0.92693 1.02053 0.84188 0.94109 0.78398 0.95838 0.94180 0.80132 0.91410 0.91933 0.91318 0.89966 0.91670 0.90867 0.89166 0.89869 0.83036 0.81087 0.81671 0.93549 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.42 13.06 55.49 0.72 -28.69 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 0.90 24.64 29.55 -169.99 -5.02 19.61 16 4 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 5 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.29 -8.03 7.11 56.52 0.40 -7.63 16 7 C -0.20 -5.67 8.21 -15.06 -0.12 -5.79 16 8 H 0.09 2.64 5.28 -52.48 -0.28 2.36 16 9 N -0.70 -16.91 4.75 -47.12 -0.22 -17.13 16 10 C 0.19 3.48 0.68 -131.70 -0.09 3.39 16 11 C 0.08 1.30 6.07 37.15 0.23 1.53 16 12 O -0.54 -10.33 10.10 -35.23 -0.36 -10.68 16 13 C -0.12 -1.64 4.77 -26.65 -0.13 -1.76 16 14 C -0.13 -1.76 5.91 -26.57 -0.16 -1.92 16 15 C 0.11 1.36 6.34 -3.71 -0.02 1.34 16 16 N -0.59 -10.26 2.89 -172.77 -0.50 -10.76 16 17 C 0.52 10.38 7.78 -10.98 -0.09 10.29 16 18 O -0.51 -12.66 15.92 -14.36 -0.23 -12.89 16 19 C 0.05 0.75 3.69 36.01 0.13 0.89 16 20 O -0.27 -4.95 9.74 -40.38 -0.39 -5.34 16 21 C 0.12 1.83 6.64 -41.04 -0.27 1.55 16 22 C -0.14 -1.78 10.17 -41.11 -0.42 -2.20 16 23 C -0.19 -1.94 11.22 29.05 0.33 -1.62 16 24 S 0.11 1.08 23.34 -107.50 -2.51 -1.42 16 25 C -0.33 -4.06 10.09 29.12 0.29 -3.76 16 26 C 0.11 2.13 4.85 -3.71 -0.02 2.11 16 27 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.38 9.79 6.42 -40.82 -0.26 9.52 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.35 4.98 9.12 45.56 0.42 5.40 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 38 H 0.09 1.32 7.40 -51.93 -0.38 0.93 16 39 H 0.08 0.98 7.67 -51.92 -0.40 0.58 16 40 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 41 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.17 1.73 7.02 -52.49 -0.37 1.36 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 2.46 5.71 -51.93 -0.30 2.16 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -37.30 365.33 -8.61 -45.91 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.17 Total: 12.59 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.43 Total: 3.30 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.00 Total: -56.58 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.98 Total: -28.91 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.02 Total: 19.61 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.30 -8.61 -45.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273930251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.683 kcal (2) G-P(sol) polarization free energy of solvation -37.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds