Wall clock time and date at job start Tue Mar 31 2020 23:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47518 * 273.03758 * 3 2 1 5 5 H 1.48504 * 109.47180 * 33.04082 * 3 2 1 6 6 H 1.48507 * 109.47350 * 153.04031 * 3 2 1 7 7 C 1.39938 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 347.21606 * 7 2 1 9 9 C 1.41448 * 119.99627 * 167.21324 * 7 2 1 10 10 C 1.40786 * 120.17849 * 329.01111 * 9 7 2 11 11 C 1.37702 * 120.04173 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.40937 * 359.97438 * 11 10 9 13 13 C 1.39872 * 120.35846 * 0.02562 * 12 11 10 14 14 C 1.47891 * 120.02404 * 179.97438 * 13 12 11 15 15 O 1.21554 * 119.99774 * 153.77823 * 14 13 12 16 16 N 1.34772 * 120.00058 * 333.78672 * 14 13 12 17 17 C 1.47071 * 120.95537 * 174.13173 * 16 14 13 18 18 C 1.53255 * 109.19717 * 116.04866 * 17 16 14 19 19 N 1.46522 * 109.22857 * 45.97308 * 18 17 16 20 20 C 1.35487 * 127.32206 * 161.60446 * 19 18 17 21 21 C 1.36573 * 106.74233 * 179.41558 * 20 19 18 22 22 C 1.47322 * 126.19134 * 179.86687 * 21 20 19 23 23 N 1.34774 * 119.99834 * 179.97438 * 22 21 20 24 24 O 1.21626 * 120.00320 * 0.02562 * 22 21 20 25 25 N 1.35892 * 107.61170 * 0.13558 * 21 20 19 26 26 C 1.29670 * 108.91845 * 0.09274 * 25 21 20 27 27 C 1.47437 * 120.95860 * 354.09841 * 16 14 13 28 28 C 1.39034 * 119.95048 * 0.27514 * 13 12 11 29 29 H 0.96990 * 120.00062 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.97548 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.79724 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.81657 * 180.02562 * 12 11 10 33 33 H 1.08999 * 109.51475 * 235.96467 * 17 16 14 34 34 H 1.08994 * 109.51482 * 356.07476 * 17 16 14 35 35 H 1.08997 * 109.51153 * 286.05015 * 18 17 16 36 36 H 1.09000 * 109.51129 * 165.89924 * 18 17 16 37 37 H 1.08002 * 126.62775 * 359.42548 * 20 19 18 38 38 H 0.96997 * 120.00171 * 0.02562 * 23 22 21 39 39 H 0.97005 * 120.00341 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.93700 * 104.01190 * 27 16 14 41 41 H 1.08996 * 110.01392 * 342.82304 * 27 16 14 42 42 H 1.08001 * 120.20161 * 179.70648 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4255 2.0836 -1.3981 5 1 1.4733 2.6332 0.7634 6 1 3.5705 1.4225 0.6348 7 6 2.0080 -1.2119 0.0005 8 1 1.4881 -2.1355 0.2079 9 6 3.3962 -1.2271 -0.2706 10 6 3.9594 -0.2676 -1.1332 11 6 5.3110 -0.2853 -1.3956 12 6 6.1246 -1.2426 -0.8154 13 6 5.5830 -2.2039 0.0441 14 6 6.4593 -3.2240 0.6597 15 8 6.1476 -3.7341 1.7180 16 7 7.6034 -3.5877 0.0472 17 6 8.5524 -4.5029 0.6990 18 6 8.6507 -5.7943 -0.1203 19 7 8.7898 -5.4562 -1.5392 20 6 9.2416 -6.2573 -2.5341 21 6 9.1840 -5.5251 -3.6856 22 6 9.5791 -5.9838 -5.0287 23 7 9.4693 -5.1526 -6.0839 24 8 10.0034 -7.1128 -5.1855 25 7 8.7021 -4.2951 -3.3670 26 6 8.4710 -4.2514 -2.0919 27 6 7.9393 -3.0802 -1.2957 28 6 4.2192 -2.2037 0.3145 29 1 -0.4850 0.8400 0.0004 30 1 3.3307 0.4824 -1.5900 31 1 5.7388 0.4524 -2.0582 32 1 7.1836 -1.2474 -1.0276 33 1 9.5335 -4.0312 0.7543 34 1 8.2025 -4.7345 1.7049 35 1 7.7481 -6.3876 0.0257 36 1 9.5198 -6.3663 0.2045 37 1 9.5815 -7.2777 -2.4356 38 1 9.1306 -4.2523 -5.9589 39 1 9.7290 -5.4546 -6.9684 40 1 8.7020 -2.3052 -1.2201 41 1 7.0475 -2.6780 -1.7763 42 1 3.7959 -2.9470 0.9739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275474695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:36 Heat of formation + Delta-G solvation = 31.137956 kcal Electronic energy + Delta-G solvation = -28602.712506 eV Core-core repulsion = 24549.035972 eV Total energy + Delta-G solvation = -4053.676534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62749 -40.02566 -39.08026 -37.59527 -36.32738 -34.55758 -33.77006 -33.51694 -31.16166 -30.60056 -30.26617 -29.49224 -26.70051 -25.53807 -24.54476 -23.43058 -22.51227 -20.91037 -20.63345 -20.06312 -19.15471 -18.15666 -17.75917 -17.06577 -16.63370 -16.49052 -16.20487 -15.76577 -15.69229 -15.23669 -14.90407 -14.65075 -14.20418 -14.08827 -14.06901 -13.84864 -13.55354 -13.11808 -12.97625 -12.81728 -12.64824 -12.56095 -12.14089 -11.96589 -11.37622 -11.20613 -10.87329 -10.64623 -10.60837 -10.32329 -10.05030 -10.02285 -9.83414 -9.81150 -9.66103 -9.24164 -9.03936 -8.67498 -7.99924 -7.84062 -7.06111 -4.65475 1.37163 1.74898 2.13055 2.18348 2.40026 2.80035 2.99209 3.12350 3.17939 3.29189 3.40295 3.44772 3.85822 3.93658 4.12732 4.30115 4.34691 4.57918 4.63956 4.88081 4.91817 5.11862 5.16612 5.22423 5.31593 5.39300 5.45662 5.74949 5.79826 5.89695 6.10202 6.22105 6.26869 6.52172 6.55082 6.60043 6.71419 6.86204 7.04695 7.17584 7.20727 7.33266 7.36571 7.62639 7.63756 7.81678 8.16632 8.18363 8.28678 8.41056 8.61565 9.95933 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.002866 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.919483 B = 9765.752594 C =10762.133719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.080 3.920 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.438 4.438 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.220 4.220 11 C -0.078 4.078 12 C -0.233 4.233 13 C -0.109 4.109 14 C 0.576 3.424 15 O -0.535 6.535 16 N -0.624 5.624 17 C 0.100 3.900 18 C 0.086 3.914 19 N -0.451 5.451 20 C 0.042 3.958 21 C -0.073 4.073 22 C 0.614 3.386 23 N -0.841 5.841 24 O -0.554 6.554 25 N -0.451 5.451 26 C 0.207 3.793 27 C 0.185 3.815 28 C -0.136 4.136 29 H 0.288 0.712 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.189 0.811 38 H 0.411 0.589 39 H 0.402 0.598 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.668 -5.281 -4.081 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.467 4.467 8 H 0.112 0.888 9 C 0.080 3.920 10 C -0.239 4.239 11 C -0.097 4.097 12 C -0.253 4.253 13 C -0.112 4.112 14 C 0.369 3.631 15 O -0.412 6.412 16 N -0.360 5.360 17 C -0.024 4.024 18 C -0.037 4.037 19 N -0.133 5.133 20 C -0.098 4.098 21 C -0.202 4.202 22 C 0.399 3.601 23 N -0.404 5.404 24 O -0.432 6.432 25 N -0.171 5.171 26 C -0.058 4.058 27 C 0.060 3.940 28 C -0.156 4.156 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.206 0.794 38 H 0.240 0.760 39 H 0.233 0.767 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.286 -5.611 -3.799 18.567 hybrid contribution 0.300 0.324 0.138 0.463 sum 17.587 -5.287 -3.660 18.725 Atomic orbital electron populations 1.69645 1.08037 1.30495 1.34736 1.26186 0.94884 1.01780 0.91022 0.86280 0.81117 0.79508 0.79015 1.19504 1.21801 1.16500 1.19553 0.91173 0.95870 1.40066 0.88829 1.17700 0.93471 0.90948 0.89843 1.21215 0.95129 1.03824 1.03760 1.20539 0.93694 0.97009 0.98433 1.20843 0.98689 1.00459 1.05307 1.19285 0.94004 0.96854 1.01049 1.18932 0.79008 0.81236 0.83926 1.90723 1.71895 1.55678 1.22904 1.48067 1.21406 1.48665 1.17846 1.21816 0.94067 0.88268 0.98236 1.22538 1.04599 0.99601 0.76923 1.45448 1.47052 1.11893 1.08886 1.22614 1.02082 0.98138 0.86973 1.20473 1.12946 0.92540 0.94200 1.16831 0.76254 0.84043 0.82935 1.43594 1.68524 1.18147 1.10108 1.90828 1.47506 1.19402 1.85477 1.70243 1.16440 1.19482 1.10953 1.23934 1.03609 0.88710 0.89567 1.21208 1.03196 0.89332 0.80214 1.21191 0.90821 1.02165 1.01420 0.90189 0.87786 0.87918 0.86947 0.89977 0.86275 0.88691 0.87680 0.79369 0.75967 0.76714 0.88321 0.83487 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.72 13.93 55.55 0.77 -19.94 16 2 C 0.08 2.02 5.46 -17.34 -0.09 1.92 16 3 Si 0.91 19.68 24.40 -169.99 -4.15 15.53 16 4 H -0.27 -5.53 6.68 56.52 0.38 -5.16 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.24 -5.30 6.67 56.52 0.38 -4.92 16 7 C -0.44 -11.33 9.60 -37.72 -0.36 -11.69 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.08 1.99 5.13 -106.87 -0.55 1.44 16 10 C -0.22 -4.81 6.99 -38.81 -0.27 -5.08 16 11 C -0.08 -1.46 10.01 -39.73 -0.40 -1.86 16 12 C -0.23 -4.05 7.50 -38.92 -0.29 -4.34 16 13 C -0.11 -2.11 5.50 -105.04 -0.58 -2.69 16 14 C 0.58 10.04 7.50 -12.31 -0.09 9.95 16 15 O -0.54 -10.67 16.09 5.32 0.09 -10.58 16 16 N -0.62 -8.13 2.96 -174.44 -0.52 -8.65 16 17 C 0.10 0.93 6.41 -3.60 -0.02 0.91 16 18 C 0.09 0.70 7.13 -3.90 -0.03 0.67 16 19 N -0.45 -4.85 3.13 -113.24 -0.35 -5.21 16 20 C 0.04 0.46 11.34 -16.54 -0.19 0.27 16 21 C -0.07 -0.93 6.98 -82.98 -0.58 -1.51 16 22 C 0.61 7.79 8.08 -12.57 -0.10 7.68 16 23 N -0.84 -7.69 8.87 30.41 0.27 -7.42 16 24 O -0.55 -8.48 17.72 5.25 0.09 -8.38 16 25 N -0.45 -5.93 10.99 -6.97 -0.08 -6.01 16 26 C 0.21 2.57 7.77 -154.63 -1.20 1.37 16 27 C 0.18 2.19 4.89 -4.40 -0.02 2.17 16 28 C -0.14 -3.04 9.33 -38.44 -0.36 -3.40 16 29 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.10 2.27 4.42 -52.48 -0.23 2.04 16 31 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.11 1.55 4.86 -52.49 -0.26 1.30 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 1.17 7.04 -51.93 -0.37 0.80 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.41 3.34 8.54 -40.82 -0.35 2.99 16 39 H 0.40 2.83 8.93 -40.82 -0.36 2.47 16 40 H 0.10 0.95 7.60 -51.93 -0.39 0.56 16 41 H 0.15 1.99 4.83 -51.93 -0.25 1.73 16 42 H 0.11 2.57 7.86 -52.49 -0.41 2.16 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -31.69 349.16 -8.09 -39.78 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.34 Total: 9.80 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -5.14 Total: -4.18 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.10 Total: -47.23 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.15 Total: 15.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.69 -8.09 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275474695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.921 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds