Wall clock time and date at job start Tue Mar 31 2020 23:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47518 * 273.03758 * 3 2 1 5 5 H 1.48504 * 109.47180 * 33.04082 * 3 2 1 6 6 H 1.48507 * 109.47350 * 153.04031 * 3 2 1 7 7 C 1.39938 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00414 * 347.21606 * 7 2 1 9 9 C 1.41448 * 119.99627 * 167.21324 * 7 2 1 10 10 C 1.40786 * 120.17849 * 329.01111 * 9 7 2 11 11 C 1.37702 * 120.04173 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.40937 * 359.97438 * 11 10 9 13 13 C 1.39872 * 120.35846 * 0.02562 * 12 11 10 14 14 C 1.47891 * 120.02404 * 179.97438 * 13 12 11 15 15 O 1.21554 * 119.99774 * 153.77823 * 14 13 12 16 16 N 1.34772 * 120.00058 * 333.78672 * 14 13 12 17 17 C 1.47071 * 120.95537 * 174.13173 * 16 14 13 18 18 C 1.53255 * 109.19717 * 116.04866 * 17 16 14 19 19 N 1.46522 * 109.22857 * 45.97308 * 18 17 16 20 20 C 1.35487 * 127.32206 * 161.60446 * 19 18 17 21 21 C 1.36573 * 106.74233 * 179.41558 * 20 19 18 22 22 C 1.47322 * 126.19134 * 179.86687 * 21 20 19 23 23 N 1.34774 * 119.99834 * 179.97438 * 22 21 20 24 24 O 1.21626 * 120.00320 * 0.02562 * 22 21 20 25 25 N 1.35892 * 107.61170 * 0.13558 * 21 20 19 26 26 C 1.29670 * 108.91845 * 0.09274 * 25 21 20 27 27 C 1.47437 * 120.95860 * 354.09841 * 16 14 13 28 28 C 1.39034 * 119.95048 * 0.27514 * 13 12 11 29 29 H 0.96990 * 120.00062 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.97548 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.79724 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.81657 * 180.02562 * 12 11 10 33 33 H 1.08999 * 109.51475 * 235.96467 * 17 16 14 34 34 H 1.08994 * 109.51482 * 356.07476 * 17 16 14 35 35 H 1.08997 * 109.51153 * 286.05015 * 18 17 16 36 36 H 1.09000 * 109.51129 * 165.89924 * 18 17 16 37 37 H 1.08002 * 126.62775 * 359.42548 * 20 19 18 38 38 H 0.96997 * 120.00171 * 0.02562 * 23 22 21 39 39 H 0.97005 * 120.00341 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.93700 * 104.01190 * 27 16 14 41 41 H 1.08996 * 110.01392 * 342.82304 * 27 16 14 42 42 H 1.08001 * 120.20161 * 179.70648 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4255 2.0836 -1.3981 5 1 1.4733 2.6332 0.7634 6 1 3.5705 1.4225 0.6348 7 6 2.0080 -1.2119 0.0005 8 1 1.4881 -2.1355 0.2079 9 6 3.3962 -1.2271 -0.2706 10 6 3.9594 -0.2676 -1.1332 11 6 5.3110 -0.2853 -1.3956 12 6 6.1246 -1.2426 -0.8154 13 6 5.5830 -2.2039 0.0441 14 6 6.4593 -3.2240 0.6597 15 8 6.1476 -3.7341 1.7180 16 7 7.6034 -3.5877 0.0472 17 6 8.5524 -4.5029 0.6990 18 6 8.6507 -5.7943 -0.1203 19 7 8.7898 -5.4562 -1.5392 20 6 9.2416 -6.2573 -2.5341 21 6 9.1840 -5.5251 -3.6856 22 6 9.5791 -5.9838 -5.0287 23 7 9.4693 -5.1526 -6.0839 24 8 10.0034 -7.1128 -5.1855 25 7 8.7021 -4.2951 -3.3670 26 6 8.4710 -4.2514 -2.0919 27 6 7.9393 -3.0802 -1.2957 28 6 4.2192 -2.2037 0.3145 29 1 -0.4850 0.8400 0.0004 30 1 3.3307 0.4824 -1.5900 31 1 5.7388 0.4524 -2.0582 32 1 7.1836 -1.2474 -1.0276 33 1 9.5335 -4.0312 0.7543 34 1 8.2025 -4.7345 1.7049 35 1 7.7481 -6.3876 0.0257 36 1 9.5198 -6.3663 0.2045 37 1 9.5815 -7.2777 -2.4356 38 1 9.1306 -4.2523 -5.9589 39 1 9.7290 -5.4546 -6.9684 40 1 8.7020 -2.3052 -1.2201 41 1 7.0475 -2.6780 -1.7763 42 1 3.7959 -2.9470 0.9739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275474695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:35 Heat of formation + Delta-G solvation = 7.324838 kcal Electronic energy + Delta-G solvation = -28603.745120 eV Core-core repulsion = 24549.035972 eV Total energy + Delta-G solvation = -4054.709148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.50522 -41.32244 -40.06417 -39.16482 -37.45813 -35.78091 -35.18893 -34.46686 -32.66595 -31.87386 -31.52582 -30.55296 -27.74713 -27.19058 -25.63778 -24.33162 -23.82642 -22.52010 -21.76296 -21.05211 -20.32755 -19.27877 -19.00437 -18.07015 -17.76067 -17.65902 -17.50835 -16.97307 -16.69341 -16.50976 -16.31477 -15.69096 -15.49352 -15.22802 -15.06886 -15.01451 -14.64803 -14.59812 -14.41509 -14.17407 -13.83203 -13.76619 -13.41750 -12.96917 -12.85311 -12.75343 -12.56644 -12.28926 -11.69705 -11.60795 -11.51256 -11.28285 -11.26611 -10.91669 -10.79047 -10.66393 -10.11489 -9.65911 -9.58654 -9.47597 -8.88961 -6.56551 0.17360 0.50284 0.73208 1.21785 1.26358 1.31258 1.42565 1.49225 1.71348 1.90961 2.11688 2.47218 2.60080 2.62776 3.06089 3.34170 3.39312 3.42405 3.70161 3.93644 4.02637 4.16958 4.25292 4.27826 4.36035 4.41052 4.49173 4.50792 4.60848 4.66892 4.86794 4.90294 4.93173 5.09063 5.22706 5.35315 5.41848 5.58377 5.69673 5.81023 5.84390 5.91054 5.98979 6.17625 6.30808 6.37083 6.63877 6.74002 6.74622 6.96741 7.33091 8.20111 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.002866 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.919483 B = 9765.752594 C =10762.133719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.970 3.030 4 H -0.246 1.246 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.486 4.486 8 H 0.048 0.952 9 C 0.066 3.934 10 C -0.223 4.223 11 C -0.079 4.079 12 C -0.192 4.192 13 C -0.114 4.114 14 C 0.576 3.424 15 O -0.569 6.569 16 N -0.613 5.613 17 C 0.095 3.905 18 C 0.087 3.913 19 N -0.448 5.448 20 C 0.052 3.948 21 C -0.099 4.099 22 C 0.610 3.390 23 N -0.825 5.825 24 O -0.588 6.588 25 N -0.462 5.462 26 C 0.193 3.807 27 C 0.184 3.816 28 C -0.164 4.164 29 H 0.294 0.706 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.211 0.789 38 H 0.417 0.583 39 H 0.413 0.587 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.510 -4.171 -5.202 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.171 1.171 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.064 3.936 10 C -0.243 4.243 11 C -0.097 4.097 12 C -0.211 4.211 13 C -0.117 4.117 14 C 0.368 3.632 15 O -0.448 6.448 16 N -0.347 5.347 17 C -0.026 4.026 18 C -0.035 4.035 19 N -0.129 5.129 20 C -0.089 4.089 21 C -0.227 4.227 22 C 0.395 3.605 23 N -0.387 5.387 24 O -0.469 6.469 25 N -0.182 5.182 26 C -0.072 4.072 27 C 0.060 3.940 28 C -0.185 4.185 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.168 0.832 32 H 0.180 0.820 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.165 0.835 37 H 0.228 0.772 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.163 -4.494 -4.964 23.152 hybrid contribution -0.885 -0.210 0.407 0.996 sum 21.278 -4.704 -4.556 22.263 Atomic orbital electron populations 1.69696 1.09324 1.31539 1.37821 1.26933 0.95536 1.04492 0.90357 0.85440 0.79470 0.75683 0.80090 1.17122 1.21026 1.16935 1.19482 0.92773 0.95013 1.44305 0.93323 1.17767 0.92693 0.92371 0.90768 1.21422 0.96944 1.02934 1.02972 1.21081 0.92248 0.97903 0.98472 1.21498 1.00991 0.97366 1.01268 1.19593 0.93098 0.98005 1.01001 1.18571 0.79999 0.80997 0.83659 1.90717 1.72937 1.56693 1.24503 1.47988 1.20270 1.48372 1.18042 1.22136 0.94286 0.88359 0.97853 1.22732 1.06320 0.99144 0.75302 1.45580 1.46303 1.11314 1.09749 1.23000 1.00636 0.98755 0.86511 1.20638 1.14308 0.92999 0.94800 1.16956 0.76043 0.83871 0.83620 1.43479 1.67227 1.17974 1.10026 1.90807 1.49375 1.20757 1.85992 1.70168 1.16679 1.19861 1.11459 1.23938 1.04246 0.89421 0.89609 1.21286 1.03432 0.90182 0.79062 1.21120 0.92661 1.02258 1.02438 0.89559 0.87666 0.83175 0.81982 0.86704 0.86744 0.89404 0.83500 0.77238 0.75184 0.75511 0.84680 0.85079 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.18 13.93 21.83 0.30 -46.87 16 2 C 0.04 2.13 5.46 85.25 0.47 2.60 16 3 Si 0.97 40.88 24.40 68.60 1.67 42.56 16 4 H -0.25 -9.38 6.68 99.48 0.66 -8.72 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.25 -10.35 6.67 99.48 0.66 -9.69 16 7 C -0.49 -27.30 9.60 23.47 0.23 -27.07 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 C 0.07 3.28 5.13 -21.32 -0.11 3.17 16 10 C -0.22 -9.45 6.99 22.77 0.16 -9.29 16 11 C -0.08 -2.60 10.01 22.18 0.22 -2.38 16 12 C -0.19 -5.82 7.50 22.70 0.17 -5.65 16 13 C -0.11 -4.26 5.50 -20.13 -0.11 -4.37 16 14 C 0.58 19.08 7.50 86.80 0.65 19.73 16 15 O -0.57 -22.58 16.09 -3.88 -0.06 -22.64 16 16 N -0.61 -13.72 2.96 -824.10 -2.44 -16.16 16 17 C 0.10 1.40 6.41 86.36 0.55 1.95 16 18 C 0.09 1.04 7.13 86.46 0.62 1.66 16 19 N -0.45 -7.93 3.13 -512.19 -1.60 -9.54 16 20 C 0.05 0.98 11.34 83.74 0.95 1.93 16 21 C -0.10 -2.29 6.98 40.52 0.28 -2.00 16 22 C 0.61 14.39 8.08 86.63 0.70 15.09 16 23 N -0.82 -13.46 8.87 -175.95 -1.56 -15.02 16 24 O -0.59 -17.26 17.72 -4.11 -0.07 -17.34 16 25 N -0.46 -10.67 10.99 -175.97 -1.93 -12.61 16 26 C 0.19 4.06 7.77 138.14 1.07 5.13 16 27 C 0.18 3.48 4.89 85.64 0.42 3.90 16 28 C -0.16 -7.67 9.33 23.01 0.21 -7.46 16 29 H 0.29 14.48 8.30 -92.72 -0.77 13.71 16 30 H 0.11 4.41 4.42 -2.91 -0.01 4.40 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.16 3.35 4.86 -2.91 -0.01 3.33 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.90 7.04 -2.39 -0.02 1.88 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.21 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.42 5.84 8.54 -92.71 -0.79 5.05 16 39 H 0.41 5.05 8.93 -92.70 -0.83 4.22 16 40 H 0.14 1.67 7.60 -2.39 -0.02 1.66 16 41 H 0.13 2.92 4.83 -2.39 -0.01 2.91 16 42 H 0.09 4.41 7.86 -2.91 -0.02 4.39 16 Total: -1.00 -76.12 349.16 0.21 -75.91 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.58 Total: 24.77 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 6.48 Total: -3.06 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -7.24 Total: -100.20 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.14 Total: -39.98 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.67 Total: 42.56 kcal Total: -76.12 0.21 -75.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275474695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.236 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds