Wall clock time and date at job start Tue Mar 31 2020 23:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48500 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47606 * 300.00424 * 3 2 1 6 6 H 1.48509 * 109.46932 * 60.00291 * 3 2 1 7 7 C 1.39938 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00039 * 197.20015 * 7 2 1 9 9 C 1.41442 * 119.99905 * 17.19567 * 7 2 1 10 10 C 1.40780 * 120.17841 * 204.97697 * 9 7 2 11 11 C 1.37714 * 120.03777 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41499 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35451 * 0.02562 * 12 11 10 14 14 C 1.47887 * 120.01888 * 180.02562 * 13 12 11 15 15 O 1.21549 * 119.99848 * 152.70545 * 14 13 12 16 16 N 1.34778 * 120.00438 * 332.69538 * 14 13 12 17 17 C 1.47069 * 120.76007 * 174.35512 * 16 14 13 18 18 C 1.53479 * 109.15346 * 115.65289 * 17 16 14 19 19 C 1.50349 * 108.71282 * 44.90797 * 18 17 16 20 20 C 1.35585 * 125.00872 * 342.34947 * 19 18 17 21 21 N 1.34213 * 107.36924 * 180.24783 * 20 19 18 22 22 H 0.96996 * 125.01218 * 179.75661 * 21 20 19 23 23 N 1.28860 * 109.98709 * 359.77567 * 21 20 19 24 24 C 1.32196 * 110.15527 * 0.12761 * 23 21 20 25 25 C 1.47708 * 126.65455 * 180.02562 * 24 23 21 26 26 N 1.34773 * 120.00183 * 359.97438 * 25 24 23 27 27 O 1.21574 * 119.99746 * 179.97438 * 25 24 23 28 28 C 1.47454 * 120.73858 * 354.33449 * 16 14 13 29 29 C 1.39022 * 119.95175 * 0.27480 * 13 12 11 30 30 H 0.96996 * 120.00692 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.98266 * 359.97438 * 10 9 7 32 32 H 1.08003 * 119.79150 * 179.97438 * 11 10 9 33 33 H 1.07997 * 119.82099 * 180.02562 * 12 11 10 34 34 H 1.09005 * 109.51274 * 355.76193 * 17 16 14 35 35 H 1.08998 * 109.54448 * 235.57112 * 17 16 14 36 36 H 1.09004 * 109.60086 * 285.13852 * 18 17 16 37 37 H 1.09001 * 109.60071 * 164.67691 * 18 17 16 38 38 H 0.96991 * 120.00423 * 359.97438 * 26 25 24 39 39 H 0.96999 * 119.99809 * 180.02562 * 26 25 24 40 40 H 1.09004 * 109.91266 * 105.02658 * 28 16 14 41 41 H 1.09000 * 109.97801 * 343.90867 * 28 16 14 42 42 H 1.08000 * 120.20334 * 179.69912 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0517 -1.2329 0.2760 9 6 1.3482 -2.4093 -0.3632 10 6 1.8206 -3.6485 0.1090 11 6 1.1763 -4.8126 -0.2463 12 6 0.0629 -4.7746 -1.0671 13 6 -0.4209 -3.5526 -1.5459 14 6 -1.6117 -3.5205 -2.4222 15 8 -2.3240 -2.5358 -2.4439 16 7 -1.9072 -4.5831 -3.1970 17 6 -3.1512 -4.6198 -3.9806 18 6 -2.8043 -4.6371 -5.4756 19 6 -1.6935 -5.6248 -5.7016 20 6 -0.8796 -6.1149 -4.7343 21 7 -0.0187 -6.9586 -5.3245 22 1 0.6807 -7.4505 -4.8666 23 7 -0.2578 -7.0185 -6.5893 24 6 -1.2715 -6.2284 -6.8991 25 6 -1.8487 -6.0204 -8.2427 26 7 -1.3356 -6.6723 -9.3049 27 8 -2.7866 -5.2612 -8.3905 28 6 -0.9901 -5.7348 -3.2783 29 6 0.2217 -2.3688 -1.2017 30 1 -0.4851 0.8399 0.0004 31 1 2.6892 -3.6864 0.7497 32 1 1.5423 -5.7612 0.1179 33 1 -0.4352 -5.6933 -1.3394 34 1 -3.7494 -3.7368 -3.7557 35 1 -3.7154 -5.5173 -3.7272 36 1 -2.4797 -3.6442 -5.7871 37 1 -3.6809 -4.9348 -6.0510 38 1 -0.5871 -7.2778 -9.1872 39 1 -1.7145 -6.5354 -10.1873 40 1 -1.3923 -6.5708 -2.7059 41 1 -0.0094 -5.4580 -2.8914 42 1 -0.1455 -1.4235 -1.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275475608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:28 Heat of formation + Delta-G solvation = 37.287993 kcal Electronic energy + Delta-G solvation = -28894.041490 eV Core-core repulsion = 24840.631642 eV Total energy + Delta-G solvation = -4053.409848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.00050 -39.67467 -39.18863 -37.24952 -36.17302 -33.95828 -33.88669 -33.02628 -31.25732 -30.67223 -29.59152 -29.45041 -25.91474 -25.46450 -24.52395 -23.91275 -21.97030 -21.13589 -20.30942 -19.97640 -18.61204 -18.12291 -17.43888 -17.41098 -16.70269 -16.25749 -15.88966 -15.61850 -15.18248 -14.95822 -14.83897 -14.38570 -14.20235 -13.94996 -13.59757 -13.39047 -13.15889 -12.87064 -12.61327 -12.52289 -12.24249 -11.84712 -11.73891 -11.38231 -11.19218 -11.02013 -10.89276 -10.78356 -10.47880 -10.36821 -10.11805 -9.91445 -9.75490 -9.53709 -9.30120 -9.04453 -8.74299 -8.49073 -7.70779 -7.58281 -6.85733 -4.48707 1.36302 1.93584 2.16321 2.54729 2.72334 3.04236 3.07671 3.09831 3.25515 3.26731 3.35463 3.68486 3.87000 4.28767 4.45138 4.53896 4.86698 4.99128 5.16044 5.30319 5.31080 5.46086 5.47610 5.58797 5.75479 5.95255 5.99760 6.06745 6.13688 6.18266 6.37030 6.52442 6.58889 6.72978 6.78475 6.91108 6.95002 7.09642 7.13075 7.29378 7.55233 7.65184 7.67123 7.78235 7.91032 8.06982 8.08781 8.42377 8.72323 8.74545 8.79229 10.08356 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002919 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.199163 B = 9591.469869 C =10001.465476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.102 3.898 10 C -0.213 4.213 11 C -0.095 4.095 12 C -0.241 4.241 13 C -0.123 4.123 14 C 0.571 3.429 15 O -0.532 6.532 16 N -0.614 5.614 17 C 0.111 3.889 18 C -0.057 4.057 19 C -0.135 4.135 20 C 0.002 3.998 21 N -0.363 5.363 22 H 0.448 0.552 23 N -0.263 5.263 24 C -0.015 4.015 25 C 0.612 3.388 26 N -0.845 5.845 27 O -0.530 6.530 28 C 0.170 3.830 29 C -0.095 4.095 30 H 0.286 0.714 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.407 0.593 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -14.244 -11.026 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.148 4.148 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.233 4.233 11 C -0.113 4.113 12 C -0.260 4.260 13 C -0.127 4.127 14 C 0.363 3.637 15 O -0.409 6.409 16 N -0.349 5.349 17 C -0.012 4.012 18 C -0.096 4.096 19 C -0.145 4.145 20 C -0.127 4.127 21 N -0.076 5.076 22 H 0.293 0.707 23 N -0.100 5.100 24 C -0.174 4.174 25 C 0.395 3.605 26 N -0.408 5.408 27 O -0.404 6.404 28 C 0.045 3.955 29 C -0.115 4.115 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.236 0.764 39 H 0.236 0.764 40 H 0.104 0.896 41 H 0.152 0.848 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.001 -13.696 -11.421 17.861 hybrid contribution 0.518 0.542 0.273 0.797 sum -0.484 -13.154 -11.148 17.250 Atomic orbital electron populations 1.69794 1.07527 1.29867 1.32998 1.25991 0.94802 1.01627 0.92361 0.86236 0.80849 0.80790 0.78779 1.18325 1.19522 1.19829 1.19643 0.98010 0.90963 1.40015 0.89990 1.17599 0.91097 0.92511 0.88881 1.21104 1.03578 0.92807 1.05826 1.20450 0.96131 0.96716 0.98034 1.20723 1.01558 0.95199 1.08546 1.19413 0.96167 0.95440 1.01631 1.18940 0.85357 0.80765 0.78666 1.90725 1.51592 1.31495 1.67061 1.47963 1.21231 1.18626 1.47058 1.21643 0.86384 1.03470 0.89661 1.20378 0.95792 0.97308 0.96165 1.19818 1.01402 1.02827 0.90466 1.21680 0.94863 0.97819 0.98293 1.42808 1.26648 1.33498 1.04684 0.70658 1.73722 1.17462 1.22156 0.96701 1.21463 0.98613 1.02188 0.95159 1.16848 0.81805 0.79414 0.82464 1.43645 1.38387 1.48618 1.10192 1.90845 1.27861 1.36694 1.85013 1.20954 0.98140 0.89441 0.86975 1.21566 0.96745 0.95971 0.97226 0.90320 0.88627 0.88854 0.87847 0.88191 0.91347 0.90070 0.88953 0.76428 0.76433 0.89560 0.84816 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.27 10.97 55.55 0.61 -19.66 16 2 C 0.07 1.78 5.15 -17.35 -0.09 1.69 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.46 -11.64 9.05 -37.73 -0.34 -11.98 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.10 2.58 5.56 -106.87 -0.59 1.98 16 10 C -0.21 -4.77 9.78 -38.81 -0.38 -5.15 16 11 C -0.10 -1.85 10.01 -39.72 -0.40 -2.25 16 12 C -0.24 -4.58 7.47 -38.92 -0.29 -4.87 16 13 C -0.12 -2.75 5.47 -105.04 -0.57 -3.33 16 14 C 0.57 12.12 7.48 -12.31 -0.09 12.03 16 15 O -0.53 -13.13 16.09 5.32 0.09 -13.04 16 16 N -0.61 -10.08 2.94 -174.51 -0.51 -10.59 16 17 C 0.11 1.60 6.37 -3.48 -0.02 1.58 16 18 C -0.06 -0.82 5.71 -27.80 -0.16 -0.98 16 19 C -0.13 -1.90 6.03 -104.85 -0.63 -2.53 16 20 C 0.00 0.02 7.22 -82.41 -0.59 -0.57 16 21 N -0.36 -3.63 6.82 33.45 0.23 -3.40 16 22 H 0.45 2.80 8.96 -190.21 -1.70 1.10 16 23 N -0.26 -2.99 11.96 33.30 0.40 -2.59 16 24 C -0.01 -0.20 7.12 -82.96 -0.59 -0.79 16 25 C 0.61 7.76 8.10 -12.39 -0.10 7.66 16 26 N -0.84 -6.89 8.87 30.50 0.27 -6.62 16 27 O -0.53 -8.34 16.55 5.30 0.09 -8.26 16 28 C 0.17 2.18 4.89 -4.58 -0.02 2.16 16 29 C -0.10 -2.43 8.23 -38.44 -0.32 -2.75 16 30 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.09 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.10 1.58 4.97 -52.49 -0.26 1.32 16 34 H 0.10 1.57 7.03 -51.93 -0.36 1.20 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 38 H 0.41 2.58 8.56 -40.82 -0.35 2.23 16 39 H 0.40 2.51 8.93 -40.82 -0.36 2.14 16 40 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 41 H 0.13 1.83 4.76 -51.93 -0.25 1.59 16 42 H 0.13 3.63 6.01 -52.49 -0.32 3.32 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -32.76 351.80 -9.40 -42.16 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.64 Total: 11.45 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -5.20 Total: -8.09 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.99 Total: -42.86 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.17 Total: -21.30 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.76 -9.40 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275475608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.450 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds