Wall clock time and date at job start Tue Mar 31 2020 22:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86800 * 120.00209 * 2 1 4 4 H 1.48498 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47256 * 300.00228 * 3 2 1 6 6 H 1.48502 * 109.46748 * 60.00426 * 3 2 1 7 7 C 1.40227 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00099 * 162.93976 * 7 2 1 9 9 C 1.41108 * 119.99916 * 342.94648 * 7 2 1 10 10 C 1.40887 * 120.10253 * 334.76274 * 9 7 2 11 11 C 1.36320 * 119.89036 * 179.76533 * 10 9 7 12 12 C 1.40011 * 120.10672 * 0.54080 * 11 10 9 13 13 C 1.47647 * 119.89582 * 179.71964 * 12 11 10 14 14 O 1.21591 * 119.99485 * 328.57179 * 13 12 11 15 15 N 1.34770 * 120.00187 * 148.57874 * 13 12 11 16 16 C 1.47069 * 120.95796 * 174.42190 * 15 13 12 17 17 C 1.53257 * 109.19158 * 116.07366 * 16 15 13 18 18 N 1.46538 * 109.22656 * 46.02310 * 17 16 15 19 19 C 1.34969 * 127.27272 * 161.40932 * 18 17 16 20 20 C 1.36559 * 106.83325 * 179.53666 * 19 18 17 21 21 C 1.47331 * 126.20744 * 180.10935 * 20 19 18 22 22 N 1.34769 * 120.00039 * 180.02562 * 21 20 19 23 23 O 1.21624 * 119.99943 * 359.97438 * 21 20 19 24 24 N 1.35905 * 107.58427 * 0.12666 * 20 19 18 25 25 C 1.29689 * 108.79618 * 0.11532 * 24 20 19 26 26 C 1.47433 * 120.95885 * 354.14116 * 15 13 12 27 27 C 1.40008 * 120.21193 * 359.69453 * 12 11 10 28 28 C 1.36322 * 120.10344 * 0.04188 * 27 12 11 29 29 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05394 * 0.03540 * 10 9 7 31 31 H 1.08007 * 119.94810 * 180.25925 * 11 10 9 32 32 H 1.08997 * 109.51630 * 235.99003 * 16 15 13 33 33 H 1.08994 * 109.51738 * 356.16296 * 16 15 13 34 34 H 1.09001 * 109.51212 * 165.94522 * 17 16 15 35 35 H 1.09004 * 109.51366 * 286.04295 * 17 16 15 36 36 H 1.08001 * 126.58008 * 359.55736 * 19 18 17 37 37 H 0.97005 * 120.00169 * 359.97438 * 22 21 20 38 38 H 0.96994 * 120.00379 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.94366 * 342.71279 * 26 15 13 40 40 H 1.09002 * 109.94071 * 103.95001 * 26 15 13 41 41 H 1.07995 * 119.95023 * 180.02562 * 27 12 11 42 42 H 1.08003 * 120.05110 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8818 2.3963 1.2126 7 6 2.0075 -1.2144 -0.0005 8 1 3.0519 -1.2349 -0.2750 9 6 1.3484 -2.4097 0.3573 10 6 0.2166 -2.3690 1.1953 11 6 -0.4196 -3.5259 1.5344 12 6 0.0567 -4.7543 1.0605 13 6 -0.6323 -6.0050 1.4357 14 8 -1.1869 -6.0935 2.5142 15 7 -0.6464 -7.0486 0.5830 16 6 -1.2194 -8.3432 0.9811 17 6 -2.4370 -8.6471 0.1014 18 7 -2.1004 -8.3762 -1.2988 19 6 -2.7435 -8.8276 -2.3962 20 6 -2.0869 -8.3149 -3.4783 21 6 -2.4345 -8.5368 -4.8927 22 7 -1.6961 -7.9670 -5.8655 23 8 -3.3873 -9.2350 -5.1824 24 7 -1.0543 -7.5632 -3.0137 25 6 -1.0590 -7.6024 -1.7174 26 6 -0.0934 -6.9234 -0.7780 27 6 1.1841 -4.8003 0.2315 28 6 1.8238 -3.6482 -0.1173 29 1 -0.4850 0.8400 0.0004 30 1 -0.1489 -1.4223 1.5648 31 1 -1.2899 -3.4954 2.1733 32 1 -0.4727 -9.1268 0.8528 33 1 -1.5269 -8.2995 2.0259 34 1 -2.7141 -9.6954 0.2129 35 1 -3.2721 -8.0156 0.4047 36 1 -3.6111 -9.4705 -2.4149 37 1 -0.9359 -7.4104 -5.6344 38 1 -1.9247 -8.1133 -6.7966 39 1 0.0053 -5.8710 -1.0439 40 1 0.8786 -7.4139 -0.8308 41 1 1.5476 -5.7501 -0.1319 42 1 2.6936 -3.6847 -0.7565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275736978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:56 Heat of formation + Delta-G solvation = 19.609371 kcal Electronic energy + Delta-G solvation = -28541.812148 eV Core-core repulsion = 24487.635697 eV Total energy + Delta-G solvation = -4054.176451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55267 -39.70213 -38.96533 -37.35698 -36.05952 -34.43213 -33.87087 -33.46621 -30.66530 -30.44575 -29.91315 -29.19241 -26.56819 -25.99840 -24.04796 -23.34188 -21.84259 -21.06498 -20.41930 -19.91366 -18.75611 -18.04487 -17.63145 -17.07592 -16.58952 -16.47834 -16.09712 -15.59152 -15.44131 -14.99177 -14.69016 -14.36924 -14.17291 -14.04007 -13.87568 -13.55333 -13.42728 -12.80273 -12.73951 -12.65935 -12.39537 -12.12073 -11.97534 -11.79866 -11.44046 -11.27395 -11.03101 -10.68544 -10.50563 -10.23032 -10.11689 -9.92626 -9.73047 -9.62863 -9.42302 -9.24543 -8.81671 -8.54150 -7.78055 -7.63486 -7.07883 -4.67220 1.47838 2.12609 2.24598 2.33046 2.85107 2.91675 2.94110 2.98161 3.04641 3.49275 3.54058 3.56825 3.71144 4.08554 4.25969 4.41393 4.45895 4.70237 4.77575 4.98415 5.18691 5.27472 5.30916 5.44196 5.49934 5.60969 5.69119 5.90101 5.95075 6.16713 6.28813 6.44930 6.68942 6.74093 6.76237 6.82751 6.93836 7.00872 7.27773 7.35027 7.44809 7.54573 7.73283 7.77998 7.86970 7.99582 8.25248 8.35218 8.56449 8.65292 8.69381 9.83851 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.002970 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.234614 B = 9425.360164 C =11075.726290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.128 3.872 10 C -0.179 4.179 11 C -0.037 4.037 12 C -0.288 4.288 13 C 0.585 3.415 14 O -0.559 6.559 15 N -0.630 5.630 16 C 0.100 3.900 17 C 0.086 3.914 18 N -0.448 5.448 19 C 0.040 3.960 20 C -0.075 4.075 21 C 0.615 3.385 22 N -0.841 5.841 23 O -0.556 6.556 24 N -0.450 5.450 25 C 0.208 3.792 26 C 0.193 3.807 27 C -0.059 4.059 28 C -0.231 4.231 29 H 0.287 0.713 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.411 0.589 38 H 0.402 0.598 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -12.145 -3.804 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.198 4.198 11 C -0.056 4.056 12 C -0.292 4.292 13 C 0.382 3.618 14 O -0.439 6.439 15 N -0.365 5.365 16 C -0.023 4.023 17 C -0.037 4.037 18 N -0.129 5.129 19 C -0.100 4.100 20 C -0.204 4.204 21 C 0.400 3.600 22 N -0.404 5.404 23 O -0.434 6.434 24 N -0.170 5.170 25 C -0.057 4.057 26 C 0.069 3.931 27 C -0.078 4.078 28 C -0.250 4.250 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.205 0.795 37 H 0.241 0.759 38 H 0.232 0.768 39 H 0.156 0.844 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.824 -12.079 -3.577 12.729 hybrid contribution -0.137 0.459 0.027 0.480 sum -1.960 -11.620 -3.551 12.307 Atomic orbital electron populations 1.69739 1.07938 1.30117 1.31352 1.26115 0.94823 1.01980 0.91911 0.86163 0.81062 0.80183 0.78920 1.18029 1.19620 1.19370 1.19895 0.98144 0.91078 1.37598 0.89598 1.17794 0.90423 0.92198 0.87099 1.21009 0.99799 0.96947 1.02063 1.20382 0.97490 0.91529 0.96214 1.18734 1.04176 0.91306 1.14990 1.18787 0.77944 0.82489 0.82631 1.90661 1.47487 1.82359 1.23358 1.48126 1.62838 1.11669 1.13872 1.21747 0.93826 0.86226 1.00540 1.22553 1.00432 1.03326 0.77383 1.45312 1.23353 1.36916 1.07346 1.22471 1.00171 1.02297 0.85039 1.20474 0.99280 1.06882 0.93797 1.16833 0.81319 0.78246 0.83593 1.43595 1.34275 1.53553 1.08948 1.90819 1.29092 1.39990 1.83491 1.70297 1.20206 1.19293 1.07204 1.23854 0.92855 0.97923 0.91081 1.20756 0.91909 1.03109 0.77373 1.20623 0.94650 0.97199 0.95331 1.20704 1.04157 0.92674 1.07477 0.90158 0.86108 0.88631 0.90381 0.86481 0.87881 0.88809 0.79472 0.75920 0.76768 0.84412 0.88721 0.88232 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.13 10.94 55.56 0.61 -17.53 16 2 C 0.07 1.67 5.15 -17.31 -0.09 1.58 16 3 Si 0.91 16.85 29.59 -169.99 -5.03 11.82 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -10.48 9.05 -37.75 -0.34 -10.82 16 8 H 0.09 1.94 7.91 -52.48 -0.41 1.53 16 9 C 0.13 3.09 5.57 -106.80 -0.60 2.50 16 10 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 11 C -0.04 -0.84 9.53 -39.61 -0.38 -1.22 16 12 C -0.29 -6.04 5.38 -104.73 -0.56 -6.60 16 13 C 0.58 11.18 7.43 -12.42 -0.09 11.09 16 14 O -0.56 -11.99 16.18 5.29 0.09 -11.91 16 15 N -0.63 -9.29 2.97 -174.78 -0.52 -9.81 16 16 C 0.10 1.09 6.41 -3.60 -0.02 1.07 16 17 C 0.09 0.81 7.12 -3.89 -0.03 0.78 16 18 N -0.45 -5.43 3.11 -113.53 -0.35 -5.78 16 19 C 0.04 0.50 11.31 -16.78 -0.19 0.31 16 20 C -0.08 -1.06 6.98 -82.97 -0.58 -1.64 16 21 C 0.61 8.44 8.08 -12.57 -0.10 8.34 16 22 N -0.84 -8.59 8.87 30.41 0.27 -8.32 16 23 O -0.56 -9.00 17.72 5.26 0.09 -8.91 16 24 N -0.45 -6.60 11.00 -7.10 -0.08 -6.68 16 25 C 0.21 2.92 7.76 -154.82 -1.20 1.72 16 26 C 0.19 2.66 4.91 -4.60 -0.02 2.64 16 27 C -0.06 -1.16 7.39 -39.61 -0.29 -1.45 16 28 C -0.23 -4.97 9.73 -39.27 -0.38 -5.35 16 29 H 0.29 6.10 8.29 -40.82 -0.34 5.77 16 30 H 0.12 3.03 6.17 -52.49 -0.32 2.70 16 31 H 0.10 2.15 7.93 -52.48 -0.42 1.73 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.32 7.04 -51.93 -0.37 0.96 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.41 3.85 8.54 -40.82 -0.35 3.50 16 38 H 0.40 3.21 8.93 -40.82 -0.36 2.85 16 39 H 0.14 2.20 5.12 -51.93 -0.27 1.93 16 40 H 0.10 1.10 7.59 -51.93 -0.39 0.70 16 41 H 0.10 1.60 5.41 -52.49 -0.28 1.31 16 42 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -30.76 355.60 -9.21 -39.97 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.43 Total: 13.54 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -5.22 Total: -1.75 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.07 Total: -48.12 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.18 Total: -20.82 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.76 -9.21 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275736978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.574 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds