Wall clock time and date at job start Tue Mar 31 2020 22:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86800 * 120.00209 * 2 1 4 4 H 1.48498 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47256 * 300.00228 * 3 2 1 6 6 H 1.48502 * 109.46748 * 60.00426 * 3 2 1 7 7 C 1.40227 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00099 * 162.93976 * 7 2 1 9 9 C 1.41108 * 119.99916 * 342.94648 * 7 2 1 10 10 C 1.40887 * 120.10253 * 334.76274 * 9 7 2 11 11 C 1.36320 * 119.89036 * 179.76533 * 10 9 7 12 12 C 1.40011 * 120.10672 * 0.54080 * 11 10 9 13 13 C 1.47647 * 119.89582 * 179.71964 * 12 11 10 14 14 O 1.21591 * 119.99485 * 328.57179 * 13 12 11 15 15 N 1.34770 * 120.00187 * 148.57874 * 13 12 11 16 16 C 1.47069 * 120.95796 * 174.42190 * 15 13 12 17 17 C 1.53257 * 109.19158 * 116.07366 * 16 15 13 18 18 N 1.46538 * 109.22656 * 46.02310 * 17 16 15 19 19 C 1.34969 * 127.27272 * 161.40932 * 18 17 16 20 20 C 1.36559 * 106.83325 * 179.53666 * 19 18 17 21 21 C 1.47331 * 126.20744 * 180.10935 * 20 19 18 22 22 N 1.34769 * 120.00039 * 180.02562 * 21 20 19 23 23 O 1.21624 * 119.99943 * 359.97438 * 21 20 19 24 24 N 1.35905 * 107.58427 * 0.12666 * 20 19 18 25 25 C 1.29689 * 108.79618 * 0.11532 * 24 20 19 26 26 C 1.47433 * 120.95885 * 354.14116 * 15 13 12 27 27 C 1.40008 * 120.21193 * 359.69453 * 12 11 10 28 28 C 1.36322 * 120.10344 * 0.04188 * 27 12 11 29 29 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.05394 * 0.03540 * 10 9 7 31 31 H 1.08007 * 119.94810 * 180.25925 * 11 10 9 32 32 H 1.08997 * 109.51630 * 235.99003 * 16 15 13 33 33 H 1.08994 * 109.51738 * 356.16296 * 16 15 13 34 34 H 1.09001 * 109.51212 * 165.94522 * 17 16 15 35 35 H 1.09004 * 109.51366 * 286.04295 * 17 16 15 36 36 H 1.08001 * 126.58008 * 359.55736 * 19 18 17 37 37 H 0.97005 * 120.00169 * 359.97438 * 22 21 20 38 38 H 0.96994 * 120.00379 * 179.97438 * 22 21 20 39 39 H 1.08995 * 109.94366 * 342.71279 * 26 15 13 40 40 H 1.09002 * 109.94071 * 103.95001 * 26 15 13 41 41 H 1.07995 * 119.95023 * 180.02562 * 27 12 11 42 42 H 1.08003 * 120.05110 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8818 2.3963 1.2126 7 6 2.0075 -1.2144 -0.0005 8 1 3.0519 -1.2349 -0.2750 9 6 1.3484 -2.4097 0.3573 10 6 0.2166 -2.3690 1.1953 11 6 -0.4196 -3.5259 1.5344 12 6 0.0567 -4.7543 1.0605 13 6 -0.6323 -6.0050 1.4357 14 8 -1.1869 -6.0935 2.5142 15 7 -0.6464 -7.0486 0.5830 16 6 -1.2194 -8.3432 0.9811 17 6 -2.4370 -8.6471 0.1014 18 7 -2.1004 -8.3762 -1.2988 19 6 -2.7435 -8.8276 -2.3962 20 6 -2.0869 -8.3149 -3.4783 21 6 -2.4345 -8.5368 -4.8927 22 7 -1.6961 -7.9670 -5.8655 23 8 -3.3873 -9.2350 -5.1824 24 7 -1.0543 -7.5632 -3.0137 25 6 -1.0590 -7.6024 -1.7174 26 6 -0.0934 -6.9234 -0.7780 27 6 1.1841 -4.8003 0.2315 28 6 1.8238 -3.6482 -0.1173 29 1 -0.4850 0.8400 0.0004 30 1 -0.1489 -1.4223 1.5648 31 1 -1.2899 -3.4954 2.1733 32 1 -0.4727 -9.1268 0.8528 33 1 -1.5269 -8.2995 2.0259 34 1 -2.7141 -9.6954 0.2129 35 1 -3.2721 -8.0156 0.4047 36 1 -3.6111 -9.4705 -2.4149 37 1 -0.9359 -7.4104 -5.6344 38 1 -1.9247 -8.1133 -6.7966 39 1 0.0053 -5.8710 -1.0439 40 1 0.8786 -7.4139 -0.8308 41 1 1.5476 -5.7501 -0.1319 42 1 2.6936 -3.6847 -0.7565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275736978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:55 Heat of formation + Delta-G solvation = -1.132739 kcal Electronic energy + Delta-G solvation = -28542.711593 eV Core-core repulsion = 24487.635697 eV Total energy + Delta-G solvation = -4055.075896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.54506 -41.09808 -40.05687 -38.98886 -37.31561 -35.83319 -35.20011 -34.45763 -32.15024 -31.61314 -31.46779 -30.46911 -27.95231 -27.34732 -25.17623 -24.33469 -23.38980 -22.70947 -21.60821 -20.99550 -20.02352 -19.35503 -18.99663 -18.23019 -17.75621 -17.52559 -17.29143 -17.04324 -16.65871 -16.23088 -15.95409 -15.69700 -15.36341 -15.10439 -15.01446 -14.97518 -14.70540 -14.35525 -14.05807 -13.93604 -13.65745 -13.57889 -13.37918 -13.09669 -12.83406 -12.72727 -12.54399 -12.28958 -11.74191 -11.58503 -11.34753 -11.27764 -11.11733 -10.92921 -10.77550 -10.67407 -10.01479 -9.61420 -9.49099 -9.35506 -8.76919 -6.46279 0.47063 0.51017 1.12990 1.23047 1.36929 1.38677 1.42166 1.55709 1.85249 2.05585 2.17139 2.46536 2.61321 2.72381 3.09516 3.41938 3.48985 3.67795 3.84507 3.95611 4.06233 4.19203 4.25198 4.35898 4.40042 4.41801 4.51565 4.61587 4.68614 4.94217 4.99489 5.02964 5.18835 5.24813 5.29104 5.38739 5.60637 5.77561 5.80344 5.89802 5.96094 6.02765 6.21075 6.28069 6.36514 6.58403 6.74334 6.79882 6.91116 7.19643 7.31947 8.17922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.002970 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.234614 B = 9425.360164 C =11075.726290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.201 4.201 11 C -0.051 4.051 12 C -0.292 4.292 13 C 0.587 3.413 14 O -0.587 6.587 15 N -0.621 5.621 16 C 0.096 3.904 17 C 0.087 3.913 18 N -0.444 5.444 19 C 0.054 3.946 20 C -0.103 4.103 21 C 0.611 3.389 22 N -0.825 5.825 23 O -0.587 6.587 24 N -0.464 5.464 25 C 0.192 3.808 26 C 0.195 3.805 27 C -0.044 4.044 28 C -0.242 4.242 29 H 0.294 0.706 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.214 0.786 37 H 0.416 0.584 38 H 0.413 0.587 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -14.168 -4.392 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.220 4.220 11 C -0.070 4.070 12 C -0.296 4.296 13 C 0.382 3.618 14 O -0.469 6.469 15 N -0.354 5.354 16 C -0.026 4.026 17 C -0.035 4.035 18 N -0.125 5.125 19 C -0.087 4.087 20 C -0.231 4.231 21 C 0.396 3.604 22 N -0.388 5.388 23 O -0.468 6.468 24 N -0.184 5.184 25 C -0.074 4.074 26 C 0.071 3.929 27 C -0.062 4.062 28 C -0.261 4.261 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.166 0.834 35 H 0.107 0.893 36 H 0.230 0.770 37 H 0.247 0.753 38 H 0.245 0.755 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.185 -14.129 -4.198 14.787 hybrid contribution -0.402 0.917 0.190 1.019 sum -1.587 -13.212 -4.008 13.897 Atomic orbital electron populations 1.69793 1.09427 1.31324 1.32309 1.26957 0.95445 1.05063 0.90894 0.85094 0.79728 0.75674 0.78954 1.17477 1.18924 1.19141 1.20163 0.98593 0.91987 1.39207 0.89107 1.18133 0.90734 0.93714 0.87573 1.20925 1.00986 0.96656 1.03468 1.20473 0.97521 0.92406 0.96600 1.19051 1.04576 0.91722 1.14284 1.18416 0.77705 0.82901 0.82766 1.90648 1.48522 1.83034 1.24741 1.47988 1.61949 1.12020 1.13466 1.22072 0.95208 0.84612 1.00704 1.22759 0.99297 1.05995 0.75434 1.45450 1.22595 1.36128 1.08317 1.22897 1.00020 1.01341 0.84473 1.20680 0.99989 1.08010 0.94441 1.16927 0.81204 0.78141 0.84090 1.43482 1.33638 1.52461 1.09174 1.90797 1.30479 1.41607 1.83917 1.70218 1.20798 1.19584 1.07767 1.23772 0.93767 0.98836 0.91010 1.20738 0.93367 1.02195 0.76610 1.20936 0.93243 0.98329 0.93716 1.20962 1.04890 0.92461 1.07773 0.89528 0.87999 0.89241 0.87299 0.86773 0.83396 0.89315 0.76950 0.75275 0.75475 0.86725 0.85722 0.84211 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.49 10.94 21.87 0.24 -39.25 16 2 C 0.03 1.61 5.15 85.35 0.44 2.05 16 3 Si 0.99 34.91 29.59 68.60 2.03 36.94 16 4 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 5 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 6 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.47 -23.13 9.05 23.46 0.21 -22.92 16 8 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 9 C 0.10 5.06 5.57 -21.28 -0.12 4.94 16 10 C -0.20 -10.26 8.63 22.47 0.19 -10.07 16 11 C -0.05 -2.42 9.53 22.25 0.21 -2.20 16 12 C -0.29 -12.25 5.38 -19.93 -0.11 -12.36 16 13 C 0.59 21.84 7.43 86.73 0.64 22.49 16 14 O -0.59 -24.94 16.18 -4.00 -0.06 -25.00 16 15 N -0.62 -16.79 2.97 -825.14 -2.45 -19.24 16 16 C 0.10 1.75 6.41 86.36 0.55 2.31 16 17 C 0.09 1.29 7.12 86.46 0.62 1.91 16 18 N -0.44 -9.34 3.11 -513.10 -1.60 -10.94 16 19 C 0.05 1.17 11.31 83.82 0.95 2.12 16 20 C -0.10 -2.69 6.98 40.51 0.28 -2.41 16 21 C 0.61 16.00 8.08 86.64 0.70 16.70 16 22 N -0.83 -15.79 8.87 -175.95 -1.56 -17.35 16 23 O -0.59 -18.38 17.72 -4.11 -0.07 -18.45 16 24 N -0.46 -12.76 11.00 -176.36 -1.94 -14.70 16 25 C 0.19 4.90 7.76 138.00 1.07 5.97 16 26 C 0.19 4.87 4.91 85.51 0.42 5.29 16 27 C -0.04 -1.67 7.39 22.25 0.16 -1.50 16 28 C -0.24 -10.39 9.73 22.47 0.22 -10.17 16 29 H 0.29 12.95 8.29 -92.71 -0.77 12.18 16 30 H 0.10 5.47 6.17 -2.91 -0.02 5.46 16 31 H 0.09 4.25 7.93 -2.91 -0.02 4.22 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 2.25 7.04 -2.39 -0.02 2.24 16 34 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.42 7.25 8.54 -92.70 -0.79 6.46 16 38 H 0.41 6.05 8.93 -92.71 -0.83 5.22 16 39 H 0.12 3.47 5.12 -2.39 -0.01 3.45 16 40 H 0.13 2.39 7.59 -2.39 -0.02 2.37 16 41 H 0.14 4.08 5.41 -2.91 -0.02 4.06 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.64 355.60 0.53 -69.11 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.50 Total: 36.73 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 6.45 Total: 2.14 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -7.31 Total: -101.47 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.14 Total: -43.45 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -69.64 0.53 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275736978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.976 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds