Wall clock time and date at job start Wed Apr 1 2020 00:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38098 * 120.08305 * 2 1 4 4 Cl 1.73599 * 119.93896 * 359.97438 * 3 2 1 5 5 C 1.38443 * 120.11735 * 180.25417 * 3 2 1 6 6 C 1.38364 * 120.27801 * 359.45129 * 5 3 2 7 7 C 1.37945 * 120.16117 * 0.54935 * 6 5 3 8 8 C 1.39538 * 120.07410 * 179.97438 * 2 1 3 9 9 C 1.47850 * 120.14508 * 0.03896 * 8 2 1 10 10 O 1.21555 * 119.99331 * 6.45843 * 9 8 2 11 11 N 1.34776 * 120.00239 * 186.45170 * 9 8 2 12 12 C 1.46501 * 119.99972 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47013 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.47274 * 64.99991 * 13 12 11 15 15 C 1.42902 * 114.00005 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47025 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46756 * 65.00354 * 16 15 14 18 18 C 1.46497 * 120.00163 * 269.99502 * 17 16 15 19 19 C 1.36940 * 119.99927 * 90.00339 * 17 16 15 20 20 H 1.07991 * 120.00389 * 23.98892 * 19 17 16 21 21 C 1.38812 * 119.99641 * 203.99519 * 19 17 16 22 22 N 1.31621 * 120.00234 * 13.90945 * 21 19 17 23 23 Si 1.86804 * 119.99815 * 193.91276 * 21 19 17 24 24 H 1.48501 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47273 * 120.00048 * 23 21 19 26 26 H 1.48504 * 109.46747 * 239.99810 * 23 21 19 27 27 H 1.08995 * 109.47587 * 96.44373 * 1 2 3 28 28 H 1.09002 * 109.47710 * 216.45015 * 1 2 3 29 29 H 1.09008 * 109.47118 * 336.44655 * 1 2 3 30 30 H 1.07997 * 119.86031 * 179.72263 * 5 3 2 31 31 H 1.08007 * 119.91928 * 180.27979 * 6 5 3 32 32 H 1.07995 * 120.05949 * 179.70526 * 7 6 5 33 33 H 0.97001 * 119.99926 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46573 * 300.00455 * 12 11 9 35 35 H 1.08997 * 109.47036 * 59.99636 * 12 11 9 36 36 H 1.09010 * 109.47140 * 184.99731 * 13 12 11 37 37 H 1.09000 * 109.47267 * 304.99751 * 13 12 11 38 38 H 1.08994 * 109.47170 * 299.99914 * 15 14 13 39 39 H 1.09004 * 109.46890 * 60.00577 * 15 14 13 40 40 H 1.08995 * 109.47321 * 185.00071 * 16 15 14 41 41 H 1.08997 * 109.47356 * 305.00321 * 16 15 14 42 42 H 1.09005 * 109.46825 * 93.82009 * 18 17 16 43 43 H 1.08995 * 109.47618 * 213.81870 * 18 17 16 44 44 H 1.08998 * 109.47302 * 333.82228 * 18 17 16 45 45 H 0.97003 * 119.99665 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3318 2.6987 -0.0007 5 6 3.5836 1.1958 -0.0053 6 6 4.2820 0.0014 0.0008 7 6 3.6022 -1.1990 0.0008 8 6 2.2063 -1.2075 0.0005 9 6 1.4719 -2.4908 0.0002 10 8 0.2622 -2.4986 -0.1189 11 7 2.1437 -3.6517 0.1319 12 6 1.4161 -4.9232 0.1310 13 6 2.4065 -6.0777 0.2946 14 8 3.0245 -5.9967 1.5805 15 6 3.9723 -7.0351 1.8364 16 6 4.5679 -6.8490 3.2335 17 7 3.5177 -7.0262 4.2395 18 6 2.7317 -5.8745 4.6887 19 6 3.2710 -8.2685 4.7601 20 1 4.0452 -9.0213 4.7514 21 6 2.0254 -8.5603 5.2990 22 7 1.0058 -7.7597 5.0712 23 14 1.7963 -10.0891 6.3476 24 1 3.0869 -10.8164 6.4512 25 1 1.3395 -9.6949 7.7045 26 1 0.7801 -10.9719 5.7203 27 1 -0.3634 -0.1153 -1.0211 28 1 -0.3634 -0.8266 0.6105 29 1 -0.3634 0.9421 0.4107 30 1 4.1208 2.1327 -0.0098 31 1 5.3621 0.0088 0.0012 32 1 4.1490 -2.1303 0.0008 33 1 3.1090 -3.6454 0.2272 34 1 0.7048 -4.9353 0.9570 35 1 0.8801 -5.0345 -0.8115 36 1 1.8769 -7.0263 0.2052 37 1 3.1704 -6.0136 -0.4803 38 1 3.4748 -8.0032 1.7791 39 1 4.7688 -6.9912 1.0936 40 1 5.3537 -7.5869 3.3947 41 1 4.9876 -5.8468 3.3190 42 1 1.8182 -5.8055 4.0981 43 1 2.4757 -5.9974 5.7409 44 1 3.3165 -4.9635 4.5610 45 1 0.1356 -7.9634 5.4481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277494627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:02 Heat of formation + Delta-G solvation = -37.795462 kcal Electronic energy + Delta-G solvation = -26985.649386 eV Core-core repulsion = 23030.091168 eV Total energy + Delta-G solvation = -3955.558217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58282 -38.72345 -37.61752 -36.70424 -35.49924 -34.61798 -32.85736 -31.79826 -31.28206 -29.39204 -27.90041 -27.12249 -25.69678 -24.22117 -23.04358 -22.60418 -21.57513 -20.72096 -20.33480 -18.11720 -16.88645 -16.57101 -16.14826 -16.07030 -15.77566 -15.51965 -15.20845 -15.02602 -14.57142 -14.10030 -13.98388 -13.74165 -13.53444 -13.35708 -13.12112 -12.69897 -12.58879 -12.36275 -12.17255 -12.16875 -11.87413 -11.74813 -11.53123 -11.40774 -10.98295 -10.92616 -10.87355 -10.76733 -10.51417 -10.08604 -9.89868 -9.82278 -9.70924 -9.33615 -9.04026 -9.01737 -8.91558 -8.49262 -6.65818 -5.66122 -3.13325 0.46979 0.84274 1.79356 2.64615 3.10538 3.39207 3.46538 3.48337 3.49392 4.12716 4.40022 4.42568 4.54090 4.56281 4.69099 4.94420 5.08153 5.22971 5.26227 5.37882 5.44620 5.47040 5.55341 5.64932 5.68998 5.70380 5.78256 5.91332 5.97856 5.99698 6.07665 6.17849 6.20365 6.21798 6.38589 6.48461 6.53944 6.75783 6.93892 7.46001 7.47316 7.76356 7.83945 7.95458 8.16039 8.46213 9.29731 9.93754 10.44896 11.37668 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002244 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.145303 B =12473.848982 C =12641.349556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.051 4.051 4 Cl -0.063 7.063 5 C -0.083 4.083 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.124 4.124 9 C 0.556 3.444 10 O -0.530 6.530 11 N -0.712 5.712 12 C 0.125 3.875 13 C 0.050 3.950 14 O -0.367 6.367 15 C 0.043 3.957 16 C 0.152 3.848 17 N -0.595 5.595 18 C 0.173 3.827 19 C -0.259 4.259 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.402 0.598 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.034 0.966 44 H -0.005 1.005 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 16.944 -14.791 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.077 4.077 4 Cl -0.034 7.034 5 C -0.102 4.102 6 C -0.141 4.141 7 C -0.094 4.094 8 C -0.128 4.128 9 C 0.344 3.656 10 O -0.409 6.409 11 N -0.364 5.364 12 C 0.002 3.998 13 C -0.028 4.028 14 O -0.286 6.286 15 C -0.037 4.037 16 C 0.024 3.976 17 N -0.317 5.317 18 C 0.028 3.972 19 C -0.389 4.389 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.218 1.218 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.238 0.762 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.013 0.987 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.133 17.169 -14.645 23.143 hybrid contribution 0.287 -1.012 0.345 1.107 sum 5.420 16.157 -14.300 22.247 Atomic orbital electron populations 1.21192 0.88993 1.04031 1.04123 1.19881 0.97661 0.89884 0.94028 1.20723 0.92424 0.86930 1.07641 1.98363 1.76922 1.31177 1.96954 1.21238 0.91830 0.99523 0.97630 1.21042 1.00537 0.91281 1.01219 1.21450 0.92921 0.99044 0.96005 1.19766 0.93547 0.93052 1.06406 1.18066 0.87063 0.83496 0.77006 1.90741 1.13515 1.87009 1.49633 1.45826 1.11254 1.05743 1.73580 1.21443 0.94691 0.80941 1.02759 1.22608 0.95303 0.97737 0.87128 1.88014 1.58093 1.50455 1.31999 1.23519 0.90121 0.90773 0.99259 1.20898 0.91679 0.98725 0.86269 1.43875 1.39348 1.05523 1.42978 1.20677 0.93428 0.84859 0.98229 1.19205 0.95349 0.90520 1.33784 0.91620 1.25046 0.95233 0.97914 1.01362 1.70107 0.99799 1.38175 1.46214 0.86264 0.77572 0.82860 0.80288 1.20396 1.21649 1.21846 0.90182 0.87969 0.91643 0.84537 0.84357 0.84815 0.76235 0.89822 0.90308 0.91909 0.93838 0.93246 0.95772 0.92380 0.93893 0.94823 0.94773 0.98692 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.44 36.01 0.30 -1.21 16 2 C -0.01 -0.15 5.92 -104.19 -0.62 -0.77 16 3 C -0.05 -0.51 6.31 -39.56 -0.25 -0.76 16 4 Cl -0.06 -0.59 27.17 -51.86 -1.41 -2.00 16 5 C -0.08 -0.69 9.82 -39.46 -0.39 -1.07 16 6 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 7 C -0.08 -0.68 9.52 -39.18 -0.37 -1.05 16 8 C -0.12 -1.46 5.87 -104.97 -0.62 -2.08 16 9 C 0.56 7.69 7.70 -12.33 -0.09 7.60 16 10 O -0.53 -8.76 13.35 5.32 0.07 -8.69 16 11 N -0.71 -8.99 5.45 -61.25 -0.33 -9.32 16 12 C 0.12 1.71 6.06 -4.05 -0.02 1.69 16 13 C 0.05 0.70 6.07 37.15 0.23 0.92 16 14 O -0.37 -6.64 9.85 -35.23 -0.35 -6.99 16 15 C 0.04 0.77 6.28 37.16 0.23 1.00 16 16 C 0.15 3.05 6.12 -4.04 -0.02 3.03 16 17 N -0.59 -15.04 2.88 -181.13 -0.52 -15.56 16 18 C 0.17 4.42 8.63 59.85 0.52 4.93 16 19 C -0.26 -7.10 9.64 -15.06 -0.15 -7.25 16 20 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 21 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 22 N -0.90 -26.57 10.83 55.49 0.60 -25.96 16 23 Si 0.90 21.91 29.58 -169.99 -5.03 16.89 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.43 5.85 -51.93 -0.30 1.12 16 29 H 0.06 0.69 6.64 -51.92 -0.34 0.35 16 30 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.13 0.94 6.46 -52.49 -0.34 0.60 16 33 H 0.40 4.28 6.55 -40.82 -0.27 4.02 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 41 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.03 0.94 7.39 -51.93 -0.38 0.56 16 43 H 0.03 0.93 7.34 -51.93 -0.38 0.55 16 44 H -0.01 -0.13 7.85 -51.93 -0.41 -0.53 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -32.66 385.18 -9.51 -42.17 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.61 Total: 0.00 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.74 Total: 3.66 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.25 Total: -50.84 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.28 Total: -15.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.41 Total: -2.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.66 -9.51 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277494627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.370 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds