Wall clock time and date at job start Wed Apr 1 2020 00:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38098 * 120.08305 * 2 1 4 4 Cl 1.73599 * 119.93896 * 359.97438 * 3 2 1 5 5 C 1.38443 * 120.11735 * 180.25417 * 3 2 1 6 6 C 1.38364 * 120.27801 * 359.45129 * 5 3 2 7 7 C 1.37945 * 120.16117 * 0.54935 * 6 5 3 8 8 C 1.39538 * 120.07410 * 179.97438 * 2 1 3 9 9 C 1.47850 * 120.14508 * 0.03896 * 8 2 1 10 10 O 1.21555 * 119.99331 * 6.45843 * 9 8 2 11 11 N 1.34776 * 120.00239 * 186.45170 * 9 8 2 12 12 C 1.46501 * 119.99972 * 180.02562 * 11 9 8 13 13 C 1.52991 * 109.47013 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.47274 * 64.99991 * 13 12 11 15 15 C 1.42902 * 114.00005 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47025 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46756 * 65.00354 * 16 15 14 18 18 C 1.46497 * 120.00163 * 269.99502 * 17 16 15 19 19 C 1.36940 * 119.99927 * 90.00339 * 17 16 15 20 20 H 1.07991 * 120.00389 * 23.98892 * 19 17 16 21 21 C 1.38812 * 119.99641 * 203.99519 * 19 17 16 22 22 N 1.31621 * 120.00234 * 13.90945 * 21 19 17 23 23 Si 1.86804 * 119.99815 * 193.91276 * 21 19 17 24 24 H 1.48501 * 109.47284 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47273 * 120.00048 * 23 21 19 26 26 H 1.48504 * 109.46747 * 239.99810 * 23 21 19 27 27 H 1.08995 * 109.47587 * 96.44373 * 1 2 3 28 28 H 1.09002 * 109.47710 * 216.45015 * 1 2 3 29 29 H 1.09008 * 109.47118 * 336.44655 * 1 2 3 30 30 H 1.07997 * 119.86031 * 179.72263 * 5 3 2 31 31 H 1.08007 * 119.91928 * 180.27979 * 6 5 3 32 32 H 1.07995 * 120.05949 * 179.70526 * 7 6 5 33 33 H 0.97001 * 119.99926 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46573 * 300.00455 * 12 11 9 35 35 H 1.08997 * 109.47036 * 59.99636 * 12 11 9 36 36 H 1.09010 * 109.47140 * 184.99731 * 13 12 11 37 37 H 1.09000 * 109.47267 * 304.99751 * 13 12 11 38 38 H 1.08994 * 109.47170 * 299.99914 * 15 14 13 39 39 H 1.09004 * 109.46890 * 60.00577 * 15 14 13 40 40 H 1.08995 * 109.47321 * 185.00071 * 16 15 14 41 41 H 1.08997 * 109.47356 * 305.00321 * 16 15 14 42 42 H 1.09005 * 109.46825 * 93.82009 * 18 17 16 43 43 H 1.08995 * 109.47618 * 213.81870 * 18 17 16 44 44 H 1.08998 * 109.47302 * 333.82228 * 18 17 16 45 45 H 0.97003 * 119.99665 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3318 2.6987 -0.0007 5 6 3.5836 1.1958 -0.0053 6 6 4.2820 0.0014 0.0008 7 6 3.6022 -1.1990 0.0008 8 6 2.2063 -1.2075 0.0005 9 6 1.4719 -2.4908 0.0002 10 8 0.2622 -2.4986 -0.1189 11 7 2.1437 -3.6517 0.1319 12 6 1.4161 -4.9232 0.1310 13 6 2.4065 -6.0777 0.2946 14 8 3.0245 -5.9967 1.5805 15 6 3.9723 -7.0351 1.8364 16 6 4.5679 -6.8490 3.2335 17 7 3.5177 -7.0262 4.2395 18 6 2.7317 -5.8745 4.6887 19 6 3.2710 -8.2685 4.7601 20 1 4.0452 -9.0213 4.7514 21 6 2.0254 -8.5603 5.2990 22 7 1.0058 -7.7597 5.0712 23 14 1.7963 -10.0891 6.3476 24 1 3.0869 -10.8164 6.4512 25 1 1.3395 -9.6949 7.7045 26 1 0.7801 -10.9719 5.7203 27 1 -0.3634 -0.1153 -1.0211 28 1 -0.3634 -0.8266 0.6105 29 1 -0.3634 0.9421 0.4107 30 1 4.1208 2.1327 -0.0098 31 1 5.3621 0.0088 0.0012 32 1 4.1490 -2.1303 0.0008 33 1 3.1090 -3.6454 0.2272 34 1 0.7048 -4.9353 0.9570 35 1 0.8801 -5.0345 -0.8115 36 1 1.8769 -7.0263 0.2052 37 1 3.1704 -6.0136 -0.4803 38 1 3.4748 -8.0032 1.7791 39 1 4.7688 -6.9912 1.0936 40 1 5.3537 -7.5869 3.3947 41 1 4.9876 -5.8468 3.3190 42 1 1.8182 -5.8055 4.0981 43 1 2.4757 -5.9974 5.7409 44 1 3.3165 -4.9635 4.5610 45 1 0.1356 -7.9634 5.4481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277494627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:01 Heat of formation + Delta-G solvation = -58.059136 kcal Electronic energy + Delta-G solvation = -26986.528085 eV Core-core repulsion = 23030.091168 eV Total energy + Delta-G solvation = -3956.436916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49903 -39.65495 -38.94687 -37.44374 -37.21075 -35.89775 -33.68031 -33.42738 -32.45110 -30.68580 -29.34886 -28.02507 -27.78444 -25.12374 -24.78713 -23.59852 -22.43272 -22.12273 -21.69292 -18.99773 -18.75878 -17.68672 -17.48702 -16.97814 -16.83569 -16.58557 -16.41100 -16.24854 -15.97880 -15.39706 -15.21112 -15.14482 -14.85730 -14.59126 -14.29048 -14.05179 -13.79121 -13.42244 -13.33068 -13.17173 -13.02513 -12.90258 -12.73617 -12.61925 -12.52418 -12.46699 -12.42422 -12.32413 -11.99198 -11.76795 -11.73187 -11.66029 -10.79296 -10.61769 -10.36415 -10.27249 -9.88885 -9.70387 -8.70689 -7.77677 -5.26537 -0.30241 0.11657 1.05824 1.45894 1.47683 1.57650 1.73810 2.11335 2.53082 2.66741 2.88065 3.35137 3.57745 3.70198 3.78320 3.85999 3.95551 4.01142 4.18150 4.27122 4.46038 4.50980 4.55211 4.61177 4.63530 4.64172 4.68011 4.71006 4.72294 4.89376 4.95004 5.03055 5.12402 5.13155 5.23199 5.24536 5.29403 5.35146 5.45615 5.67828 5.68094 5.82071 6.36825 6.47328 6.49101 7.14643 7.19403 7.93342 8.39313 9.25048 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002244 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.145303 B =12473.848982 C =12641.349556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 C -0.061 4.061 4 Cl -0.062 7.062 5 C -0.077 4.077 6 C -0.112 4.112 7 C -0.072 4.072 8 C -0.145 4.145 9 C 0.551 3.449 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.131 3.869 13 C 0.054 3.946 14 O -0.393 6.393 15 C 0.052 3.948 16 C 0.144 3.856 17 N -0.612 5.612 18 C 0.193 3.807 19 C -0.260 4.260 20 H 0.074 0.926 21 C -0.056 4.056 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.262 1.262 25 H -0.295 1.295 26 H -0.295 1.295 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.156 0.844 33 H 0.414 0.586 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.000 1.000 43 H 0.004 0.996 44 H 0.022 0.978 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 17.394 -15.835 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.037 4.037 3 C -0.088 4.088 4 Cl -0.033 7.033 5 C -0.095 4.095 6 C -0.130 4.130 7 C -0.091 4.091 8 C -0.149 4.149 9 C 0.340 3.660 10 O -0.450 6.450 11 N -0.356 5.356 12 C 0.007 3.993 13 C -0.023 4.023 14 O -0.313 6.313 15 C -0.027 4.027 16 C 0.018 3.982 17 N -0.335 5.335 18 C 0.048 3.952 19 C -0.390 4.390 20 H 0.092 0.908 21 C -0.251 4.251 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.223 1.223 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.174 0.826 33 H 0.251 0.749 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.038 0.962 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.040 0.960 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.771 17.611 -15.713 25.179 hybrid contribution -0.718 -1.068 0.614 1.426 sum 8.052 16.542 -15.100 23.801 Atomic orbital electron populations 1.21037 0.90088 1.03187 1.03330 1.19921 0.97283 0.90884 0.95587 1.20852 0.93368 0.86404 1.08164 1.98361 1.77159 1.30837 1.96983 1.21641 0.90958 1.01154 0.95780 1.21486 1.02274 0.90156 0.99083 1.21742 0.91632 1.00850 0.94870 1.19695 0.94828 0.91686 1.08656 1.18522 0.86826 0.84498 0.76197 1.90724 1.15241 1.87608 1.51398 1.45719 1.11735 1.05021 1.73089 1.21292 0.94317 0.81776 1.01886 1.22706 0.96010 0.97134 0.86492 1.87969 1.58636 1.50320 1.34369 1.23254 0.90979 0.89298 0.99167 1.21164 0.90519 1.00385 0.86123 1.44100 1.40039 1.04603 1.44755 1.20311 0.92800 0.86367 0.95733 1.19581 0.95275 0.91316 1.32829 0.90814 1.25820 0.95227 1.00948 1.03137 1.70290 0.99944 1.40164 1.47719 0.85248 0.77799 0.79584 0.78076 1.18656 1.22230 1.22266 0.90675 0.90648 0.90895 0.81887 0.80636 0.82636 0.74850 0.93839 0.88823 0.92734 0.89852 0.96201 0.90977 0.90924 0.91906 0.98190 0.97698 0.95957 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.44 71.24 0.60 -2.46 16 2 C -0.03 -0.82 5.92 -19.58 -0.12 -0.94 16 3 C -0.06 -1.17 6.31 22.29 0.14 -1.03 16 4 Cl -0.06 -1.12 27.17 -2.72 -0.07 -1.20 16 5 C -0.08 -1.02 9.82 22.35 0.22 -0.80 16 6 C -0.11 -1.26 10.03 22.23 0.22 -1.04 16 7 C -0.07 -1.11 9.52 22.53 0.21 -0.89 16 8 C -0.15 -3.33 5.87 -20.09 -0.12 -3.45 16 9 C 0.55 15.56 7.70 86.79 0.67 16.22 16 10 O -0.57 -19.99 13.35 -3.89 -0.05 -20.04 16 11 N -0.70 -17.35 5.45 -465.97 -2.54 -19.89 16 12 C 0.13 3.64 6.06 86.38 0.52 4.16 16 13 C 0.05 1.42 6.07 71.98 0.44 1.86 16 14 O -0.39 -13.71 9.85 -148.98 -1.47 -15.18 16 15 C 0.05 1.74 6.28 71.98 0.45 2.19 16 16 C 0.14 5.42 6.12 86.38 0.53 5.95 16 17 N -0.61 -30.59 2.88 -726.96 -2.09 -32.68 16 18 C 0.19 10.01 8.63 127.77 1.10 11.11 16 19 C -0.26 -14.16 9.64 84.03 0.81 -13.35 16 20 H 0.07 3.83 7.86 -2.92 -0.02 3.81 16 21 C -0.06 -3.19 5.07 84.86 0.43 -2.76 16 22 N -0.93 -57.03 10.83 21.65 0.23 -56.79 16 23 Si 0.96 45.55 29.58 68.60 2.03 47.58 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 2.32 5.85 -2.39 -0.01 2.31 16 29 H 0.07 1.64 6.64 -2.38 -0.02 1.63 16 30 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.16 1.60 6.46 -2.91 -0.02 1.58 16 33 H 0.41 7.94 6.55 -92.71 -0.61 7.34 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.51 8.03 -2.39 -0.02 2.49 16 41 H 0.06 2.11 7.87 -2.39 -0.02 2.10 16 42 H 0.00 -0.01 7.39 -2.38 -0.02 -0.03 16 43 H 0.00 0.24 7.34 -2.39 -0.02 0.22 16 44 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 45 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -74.09 385.18 2.55 -71.54 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.40 Total: 11.88 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.12 Total: 14.78 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.40 Total: -109.36 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.52 Total: -35.22 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.20 kcal Total: -74.09 2.55 -71.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277494627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.481 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds