Wall clock time and date at job start Wed Apr 1 2020 00:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37942 * 120.06889 * 2 1 4 4 C 1.38372 * 120.18525 * 180.28049 * 3 2 1 5 5 C 1.38315 * 120.31751 * 359.73405 * 4 3 2 6 6 C 1.38111 * 120.13028 * 359.97438 * 5 4 3 7 7 Cl 1.73591 * 120.09304 * 180.02562 * 6 5 4 8 8 C 1.39593 * 120.06851 * 179.73706 * 2 1 3 9 9 C 1.47763 * 120.15390 * 0.02562 * 8 2 1 10 10 O 1.21554 * 120.00204 * 269.71915 * 9 8 2 11 11 N 1.34783 * 119.99872 * 89.44783 * 9 8 2 12 12 C 1.46500 * 119.99955 * 180.26976 * 11 9 8 13 13 C 1.53002 * 109.46741 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.47088 * 65.00461 * 13 12 11 15 15 C 1.42897 * 113.99897 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47157 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47319 * 65.00027 * 16 15 14 18 18 C 1.46506 * 120.00404 * 270.00562 * 17 16 15 19 19 C 1.36938 * 119.99971 * 90.00075 * 17 16 15 20 20 H 1.07995 * 119.99849 * 22.70632 * 19 17 16 21 21 C 1.38813 * 119.99988 * 202.71509 * 19 17 16 22 22 N 1.31616 * 120.00474 * 11.50108 * 21 19 17 23 23 Si 1.86799 * 119.99649 * 191.50589 * 21 19 17 24 24 H 1.48500 * 109.47538 * 89.99834 * 23 21 19 25 25 H 1.48501 * 109.46997 * 209.99673 * 23 21 19 26 26 H 1.48498 * 109.47476 * 329.99475 * 23 21 19 27 27 H 1.09004 * 109.47147 * 270.25733 * 1 2 3 28 28 H 1.08996 * 109.47190 * 30.26688 * 1 2 3 29 29 H 1.09002 * 109.46921 * 150.26236 * 1 2 3 30 30 H 1.08005 * 119.90558 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.84553 * 179.71911 * 4 3 2 32 32 H 1.08000 * 119.93770 * 180.02562 * 5 4 3 33 33 H 0.97003 * 119.99781 * 0.27782 * 11 9 8 34 34 H 1.08998 * 109.47254 * 300.00176 * 12 11 9 35 35 H 1.09003 * 109.46666 * 60.00863 * 12 11 9 36 36 H 1.09001 * 109.46613 * 185.00153 * 13 12 11 37 37 H 1.08997 * 109.47213 * 305.00283 * 13 12 11 38 38 H 1.08994 * 109.47621 * 299.99827 * 15 14 13 39 39 H 1.09000 * 109.46992 * 60.00727 * 15 14 13 40 40 H 1.08997 * 109.47204 * 185.00273 * 16 15 14 41 41 H 1.09006 * 109.47128 * 305.00289 * 16 15 14 42 42 H 1.08995 * 109.47309 * 93.91079 * 18 17 16 43 43 H 1.09000 * 109.46852 * 213.91624 * 18 17 16 44 44 H 1.09005 * 109.46655 * 333.91496 * 18 17 16 45 45 H 0.96994 * 120.00447 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5818 1.1966 -0.0059 5 6 4.2825 0.0040 -0.0062 6 6 3.6037 -1.1988 -0.0002 7 17 4.4840 -2.6949 0.0001 8 6 2.2064 -1.2081 0.0055 9 6 1.4725 -2.4906 0.0109 10 8 1.1748 -3.0161 1.0657 11 7 1.1286 -3.0750 -1.1540 12 6 0.3958 -4.3436 -1.1487 13 6 0.1317 -4.7858 -2.5894 14 8 1.3740 -5.0696 -3.2359 15 6 1.2390 -5.4942 -4.5936 16 6 2.6242 -5.7691 -5.1822 17 7 3.2368 -6.9004 -4.4815 18 6 4.0585 -6.6670 -3.2913 19 6 3.0414 -8.1762 -4.9390 20 1 2.7699 -8.3443 -5.9707 21 6 3.1920 -9.2535 -4.0766 22 7 3.2975 -9.0494 -2.7807 23 14 3.2450 -10.9930 -4.7556 24 1 4.6502 -11.3617 -5.0633 25 1 2.6956 -11.9348 -3.7474 26 1 2.4314 -11.0654 -5.9957 27 1 -0.3634 0.0046 1.0277 28 1 -0.3633 0.8875 -0.5179 29 1 -0.3633 -0.8924 -0.5098 30 1 1.6577 2.1289 -0.0004 31 1 4.1174 2.1344 -0.0104 32 1 5.3624 0.0134 -0.0104 33 1 1.3663 -2.6556 -1.9957 34 1 0.9877 -5.1029 -0.6378 35 1 -0.5536 -4.2125 -0.6294 36 1 -0.4893 -5.6817 -2.5862 37 1 -0.3832 -3.9887 -3.1255 38 1 0.6412 -6.4048 -4.6319 39 1 0.7470 -4.7120 -5.1717 40 1 2.5282 -6.0068 -6.2416 41 1 3.2514 -4.8855 -5.0634 42 1 3.4405 -6.7626 -2.3986 43 1 4.8638 -7.4007 -3.2561 44 1 4.4827 -5.6637 -3.3337 45 1 3.4032 -9.8022 -2.1782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277520636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:15 Heat of formation + Delta-G solvation = -64.828775 kcal Electronic energy + Delta-G solvation = -27401.682778 eV Core-core repulsion = 23444.952309 eV Total energy + Delta-G solvation = -3956.730470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43637 -39.67226 -38.96596 -37.59516 -37.22561 -35.74212 -33.86927 -33.41443 -32.31196 -30.77591 -29.36843 -28.11728 -27.82549 -25.15475 -24.78972 -23.33643 -22.76420 -22.14993 -21.55665 -18.96783 -18.78299 -17.71037 -17.54613 -17.23884 -17.08518 -16.91697 -16.35718 -15.87438 -15.57669 -15.28040 -15.25898 -14.99103 -14.87583 -14.67775 -14.40188 -14.03910 -13.83370 -13.77413 -13.49175 -13.16102 -13.05325 -12.73710 -12.68590 -12.54868 -12.50552 -12.46275 -12.34551 -12.30809 -12.03241 -12.01489 -11.79756 -11.68451 -11.13892 -10.62750 -10.38680 -10.22360 -9.95670 -9.71531 -8.74377 -7.78303 -5.27055 -0.07824 0.13480 1.04158 1.40336 1.45316 1.47089 1.55556 2.08315 2.51070 2.51936 2.85678 3.34710 3.56557 3.65634 3.75777 3.90870 3.96281 4.15222 4.21929 4.24538 4.39959 4.43504 4.51632 4.57810 4.58785 4.61815 4.68086 4.68732 4.78651 4.85633 4.91961 4.99244 5.10021 5.14169 5.20015 5.27817 5.29652 5.34959 5.37955 5.65412 5.76075 5.80659 6.34568 6.37381 6.46919 7.04882 7.17831 7.91319 8.37686 9.24786 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.002816 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.841687 B = 9939.693547 C =10482.490930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C -0.111 4.111 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.026 4.026 7 Cl -0.078 7.078 8 C -0.144 4.144 9 C 0.567 3.433 10 O -0.574 6.574 11 N -0.699 5.699 12 C 0.129 3.871 13 C 0.055 3.945 14 O -0.395 6.395 15 C 0.052 3.948 16 C 0.145 3.855 17 N -0.612 5.612 18 C 0.200 3.800 19 C -0.261 4.261 20 H 0.076 0.924 21 C -0.057 4.057 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.264 1.264 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.413 0.587 34 H 0.040 0.960 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.058 0.942 42 H -0.002 1.002 43 H 0.007 0.993 44 H 0.014 0.986 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 26.984 2.088 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.047 4.047 3 C -0.128 4.128 4 C -0.094 4.094 5 C -0.141 4.141 6 C -0.053 4.053 7 Cl -0.049 7.049 8 C -0.148 4.148 9 C 0.354 3.646 10 O -0.454 6.454 11 N -0.349 5.349 12 C 0.006 3.994 13 C -0.022 4.022 14 O -0.314 6.314 15 C -0.027 4.027 16 C 0.019 3.981 17 N -0.336 5.336 18 C 0.055 3.945 19 C -0.391 4.391 20 H 0.094 0.906 21 C -0.252 4.252 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.188 1.188 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.189 0.811 31 H 0.192 0.808 32 H 0.171 0.829 33 H 0.249 0.751 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.016 0.984 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.418 26.343 3.005 27.062 hybrid contribution 0.199 -1.911 -0.229 1.935 sum -5.220 24.433 2.776 25.138 Atomic orbital electron populations 1.20952 0.88996 1.04288 1.03471 1.20181 0.97355 0.90801 0.96385 1.21524 0.94581 0.97924 0.98799 1.21725 0.94322 0.98298 0.95096 1.21336 1.01790 0.90002 1.01000 1.21238 0.90977 0.88578 1.04502 1.98441 1.75924 1.33745 1.96758 1.19705 0.92187 0.94046 1.08888 1.18412 0.78060 0.84469 0.83701 1.90777 1.56218 1.65894 1.32504 1.45848 1.57089 1.23434 1.08561 1.21342 0.96954 0.84714 0.96420 1.22704 0.87345 1.00277 0.91909 1.87989 1.29240 1.87467 1.26722 1.23248 1.00191 0.97069 0.82155 1.21140 0.91663 0.89878 0.95431 1.44092 1.55934 1.02543 1.30992 1.20254 0.92178 0.93524 0.88578 1.19600 1.41928 0.83737 0.93834 0.90601 1.25836 1.02148 1.01862 0.95341 1.70297 1.55947 1.29903 1.02302 0.85253 0.77609 0.80082 0.77415 1.21521 1.22615 1.18842 0.90421 0.87412 0.92491 0.81055 0.80753 0.82921 0.75108 0.94106 0.88469 0.92460 0.89873 0.95910 0.91103 0.90778 0.92408 0.98407 0.97443 0.96736 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.62 71.24 0.69 -1.00 16 2 C -0.05 -0.82 5.91 -19.61 -0.12 -0.93 16 3 C -0.11 -1.24 9.69 22.23 0.22 -1.02 16 4 C -0.08 -0.83 10.04 22.32 0.22 -0.61 16 5 C -0.12 -2.11 9.82 22.26 0.22 -1.89 16 6 C -0.03 -0.64 6.35 22.60 0.14 -0.50 16 7 Cl -0.08 -2.41 28.04 -2.72 -0.08 -2.49 16 8 C -0.14 -3.65 5.63 -20.07 -0.11 -3.76 16 9 C 0.57 17.60 4.78 86.76 0.41 18.02 16 10 O -0.57 -22.54 17.11 -3.89 -0.07 -22.61 16 11 N -0.70 -19.50 5.49 -466.04 -2.56 -22.06 16 12 C 0.13 3.87 6.06 86.38 0.52 4.39 16 13 C 0.05 1.55 6.07 71.98 0.44 1.99 16 14 O -0.39 -14.72 9.84 -148.98 -1.47 -16.19 16 15 C 0.05 1.85 6.28 71.98 0.45 2.30 16 16 C 0.14 5.77 6.11 86.38 0.53 6.30 16 17 N -0.61 -31.80 2.89 -726.92 -2.10 -33.90 16 18 C 0.20 10.87 8.61 127.77 1.10 11.97 16 19 C -0.26 -14.57 9.67 84.03 0.81 -13.76 16 20 H 0.08 4.02 7.85 -2.91 -0.02 3.99 16 21 C -0.06 -3.31 5.12 84.86 0.43 -2.87 16 22 N -0.94 -58.46 10.62 21.65 0.23 -58.23 16 23 Si 0.97 46.39 29.57 68.60 2.03 48.41 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 27 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.11 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.06 0.95 7.07 -2.39 -0.02 0.93 16 30 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 31 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.41 10.01 8.46 -92.71 -0.78 9.23 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.50 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 41 H 0.06 2.13 7.87 -2.38 -0.02 2.11 16 42 H 0.00 -0.15 7.43 -2.39 -0.02 -0.16 16 43 H 0.01 0.40 7.20 -2.39 -0.02 0.39 16 44 H 0.01 0.69 7.85 -2.38 -0.02 0.68 16 45 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -79.30 393.96 2.16 -77.14 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.21 Total: 11.30 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.96 Total: 18.62 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.43 Total: -114.19 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.53 Total: -38.79 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -79.30 2.16 -77.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277520636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.316 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds