Wall clock time and date at job start Tue Mar 31 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99654 * 2 1 4 4 H 1.48505 * 109.47025 * 239.99948 * 3 2 1 5 5 H 1.48500 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46898 * 120.00597 * 3 2 1 7 7 C 1.38946 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99860 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99802 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00023 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00162 * 179.97438 * 13 12 10 15 15 H 1.09009 * 109.47072 * 325.00385 * 14 13 12 16 16 C 1.52998 * 109.47080 * 84.99915 * 14 13 12 17 17 O 1.42900 * 109.47167 * 65.00096 * 16 14 13 18 18 C 1.52993 * 109.47155 * 205.00165 * 14 13 12 19 19 N 1.46495 * 109.47530 * 55.00090 * 18 14 13 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 14 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 0.96994 * 119.99930 * 359.97438 * 1 2 3 30 30 H 0.97007 * 120.00181 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47107 * 59.99761 * 12 10 9 32 32 H 1.08995 * 109.47311 * 299.99867 * 12 10 9 33 33 H 1.00899 * 110.99569 * 56.04775 * 13 12 10 34 34 H 1.09005 * 109.47483 * 185.00348 * 16 14 13 35 35 H 1.09007 * 109.47329 * 305.00072 * 16 14 13 36 36 H 0.96706 * 114.00437 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47248 * 294.99717 * 18 14 13 38 38 H 1.09007 * 109.46748 * 175.00124 * 18 14 13 39 39 H 0.97005 * 119.99275 * 359.97438 * 19 18 14 40 40 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9795 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 1 0.5852 -7.1890 0.5882 16 6 1.1442 -7.6590 -1.4385 17 8 2.3445 -7.8798 -2.1819 18 6 2.4047 -8.3424 0.6076 19 7 2.8404 -7.9142 1.9391 20 6 3.6519 -8.7047 2.6692 21 8 4.0218 -9.7730 2.2232 22 6 4.0925 -8.2719 4.0141 23 7 3.6857 -7.1033 4.4965 24 6 4.0543 -6.6817 5.6856 25 6 4.8875 -7.4469 6.4877 26 6 5.3410 -8.6701 6.0244 27 6 4.9326 -9.0945 4.7658 28 9 5.3464 -10.2834 4.2752 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0005 31 1 0.6176 -4.9204 -0.8913 32 1 0.6170 -4.9209 0.8886 33 1 2.8334 -5.9127 0.7798 34 1 0.5478 -8.5713 -1.4320 35 1 0.5727 -6.8546 -1.9019 36 1 2.1957 -8.1304 -3.1039 37 1 3.2762 -8.4870 -0.0309 38 1 1.8545 -9.2799 0.6893 39 1 2.5454 -7.0614 2.2949 40 1 3.7029 -5.7251 6.0433 41 1 5.1838 -7.0896 7.4629 42 1 5.9940 -9.2823 6.6289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278172095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:10 Heat of formation + Delta-G solvation = -114.738802 kcal Electronic energy + Delta-G solvation = -28926.143758 eV Core-core repulsion = 24435.372308 eV Total energy + Delta-G solvation = -4490.771449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.21541 -40.76720 -39.40636 -38.43207 -37.47901 -35.55215 -34.14792 -33.67099 -32.94497 -31.50591 -31.21448 -30.03876 -26.44277 -26.27871 -24.70653 -23.96675 -23.64958 -21.07886 -20.54960 -19.35506 -18.54971 -17.94216 -17.89562 -17.53719 -17.39600 -16.45289 -16.30247 -15.94350 -15.53977 -15.39439 -15.25039 -14.59639 -14.53079 -14.39210 -14.15487 -13.85680 -13.78236 -13.67339 -13.53567 -13.39685 -13.22292 -12.80703 -12.46660 -12.18112 -11.79260 -11.56287 -11.46151 -11.05086 -10.98444 -10.59222 -10.44017 -10.42001 -10.20883 -9.96160 -9.87396 -9.49267 -9.45175 -9.12789 -8.44194 -8.07676 -7.95132 -6.41231 -3.81826 0.12032 0.59038 2.45638 2.80238 3.20388 3.25890 3.30548 3.39171 3.60720 3.77461 3.91152 4.02467 4.20342 4.24585 4.33242 4.35648 4.40182 4.70563 4.87524 4.97658 5.17619 5.20912 5.24662 5.30542 5.31840 5.38589 5.45140 5.59710 5.64662 5.74789 5.93348 6.02165 6.08541 6.25162 6.27272 7.11095 7.16592 7.37743 7.55693 7.58963 7.77083 7.98243 8.06803 8.62244 9.18714 9.54874 10.06865 10.76538 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.002838 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.089744 B = 9863.049977 C =12141.012635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.579 6.579 12 C 0.048 3.952 13 N -0.653 5.653 14 C 0.076 3.924 15 H 0.062 0.938 16 C 0.092 3.908 17 O -0.554 6.554 18 C 0.120 3.880 19 N -0.708 5.708 20 C 0.571 3.429 21 O -0.521 6.521 22 C 0.047 3.953 23 N -0.429 5.429 24 C 0.092 3.908 25 C -0.119 4.119 26 C -0.119 4.119 27 C 0.109 3.891 28 F -0.106 7.106 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.350 0.650 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.373 0.627 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.174 0.826 41 H 0.152 0.848 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -17.548 10.736 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.079 0.921 16 C 0.012 3.988 17 O -0.358 6.358 18 C -0.003 4.003 19 N -0.361 5.361 20 C 0.355 3.645 21 O -0.396 6.396 22 C -0.092 4.092 23 N -0.139 5.139 24 C -0.069 4.069 25 C -0.139 4.139 26 C -0.146 4.146 27 C 0.086 3.914 28 F -0.084 7.084 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.172 0.828 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.219 0.781 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.191 0.809 41 H 0.170 0.830 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.068 -17.538 9.718 20.157 hybrid contribution -0.432 0.555 1.050 1.264 sum 1.636 -16.983 10.768 20.175 Atomic orbital electron populations 1.69604 1.05917 1.28220 1.50721 1.25246 0.95623 0.99670 0.97365 0.85926 0.78761 0.80487 0.79094 1.19890 1.21005 1.19923 1.19655 0.93351 0.82247 1.47562 0.87992 1.41841 1.09134 1.04551 1.64556 1.19753 0.88394 0.84634 0.84524 1.90543 1.13703 1.86970 1.55061 1.21790 0.94380 0.91215 1.01122 1.60047 1.18351 0.98886 1.51604 1.21885 0.96076 0.90260 0.95291 0.92067 1.22070 0.86901 0.98447 0.91332 1.86612 1.30739 1.92128 1.26275 1.21565 1.00072 0.96607 0.82029 1.45836 1.49222 1.23119 1.17925 1.17588 0.79216 0.84254 0.83458 1.90856 1.55844 1.22038 1.70888 1.21396 0.99042 0.92286 0.96527 1.67663 1.20402 1.11612 1.14271 1.23001 0.94665 1.00263 0.88952 1.22357 0.96340 0.93571 1.01619 1.21735 1.00774 0.97867 0.94217 1.18656 0.96237 0.83202 0.93265 1.91631 1.87580 1.41784 1.87369 0.91858 0.77512 0.89595 0.93801 0.82787 0.93655 0.92977 0.78126 0.88797 0.90740 0.75380 0.80867 0.82986 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.18 5.29 -10.97 -0.06 -14.24 16 10 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 11 O -0.58 -15.91 15.78 5.55 0.09 -15.83 16 12 C 0.05 0.82 5.97 -4.97 -0.03 0.79 16 13 N -0.65 -10.77 5.87 -107.99 -0.63 -11.41 16 14 C 0.08 0.94 2.60 -67.72 -0.18 0.77 16 15 H 0.06 0.66 7.80 -51.92 -0.40 0.25 16 16 C 0.09 1.02 6.80 37.16 0.25 1.28 16 17 O -0.55 -7.04 12.64 -35.23 -0.45 -7.48 16 18 C 0.12 1.56 5.20 -4.05 -0.02 1.54 16 19 N -0.71 -9.45 4.98 -61.21 -0.30 -9.76 16 20 C 0.57 8.44 7.81 -12.26 -0.10 8.34 16 21 O -0.52 -9.04 15.32 5.34 0.08 -8.96 16 22 C 0.05 0.60 6.75 -82.96 -0.56 0.04 16 23 N -0.43 -4.97 9.54 -9.76 -0.09 -5.07 16 24 C 0.09 0.75 11.18 -17.56 -0.20 0.56 16 25 C -0.12 -0.73 10.11 -39.34 -0.40 -1.13 16 26 C -0.12 -0.90 10.16 -39.24 -0.40 -1.30 16 27 C 0.11 1.25 7.32 -38.82 -0.28 0.97 16 28 F -0.11 -1.40 15.55 2.25 0.04 -1.36 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 31 H 0.09 1.36 7.36 -51.93 -0.38 0.98 16 32 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.35 6.14 6.41 -39.29 -0.25 5.89 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 36 H 0.37 3.02 9.12 45.56 0.42 3.44 16 37 H 0.09 1.44 7.39 -51.93 -0.38 1.05 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.41 5.27 6.70 -40.82 -0.27 5.00 16 40 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -36.45 369.79 -6.32 -42.77 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -4.03 Total: 19.22 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -2.23 Total: 14.22 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.37 Total: -64.13 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.28 Total: -32.27 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.45 -6.32 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278172095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.966 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds