Wall clock time and date at job start Wed Apr 1 2020 00:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37920 * 119.93247 * 2 1 4 4 C 1.39594 * 119.86540 * 180.27470 * 3 2 1 5 5 C 1.47783 * 120.12922 * 179.70340 * 4 3 2 6 6 O 1.21564 * 119.99625 * 228.89844 * 5 4 3 7 7 N 1.34776 * 120.00056 * 48.90346 * 5 4 3 8 8 C 1.46497 * 120.00079 * 5.26881 * 7 5 4 9 9 C 1.46506 * 119.99706 * 185.26687 * 7 5 4 10 10 C 1.53004 * 109.46885 * 270.00008 * 9 7 5 11 11 H 1.09001 * 109.46970 * 305.00032 * 10 9 7 12 12 O 1.42898 * 109.47279 * 65.00101 * 10 9 7 13 13 C 1.53006 * 109.46857 * 185.00388 * 10 9 7 14 14 N 1.46500 * 109.47069 * 179.97438 * 13 10 9 15 15 C 1.36935 * 119.99856 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00283 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99573 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00424 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99489 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46981 * 89.99980 * 19 17 15 21 21 H 1.48503 * 109.47031 * 209.99722 * 19 17 15 22 22 H 1.48491 * 109.47369 * 329.99788 * 19 17 15 23 23 C 1.39634 * 119.73856 * 359.42828 * 4 3 2 24 24 C 1.50696 * 120.07034 * 180.25130 * 23 4 3 25 25 C 1.37878 * 119.86589 * 0.27630 * 23 4 3 26 26 C 1.38488 * 119.93347 * 179.68392 * 2 1 3 27 27 Cl 1.73598 * 119.87062 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47485 * 270.31553 * 1 2 3 29 29 H 1.09006 * 109.47490 * 30.31904 * 1 2 3 30 30 H 1.09003 * 109.47510 * 150.31876 * 1 2 3 31 31 H 1.08002 * 120.06962 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46667 * 266.19860 * 8 7 5 33 33 H 1.08997 * 109.47073 * 26.19808 * 8 7 5 34 34 H 1.09001 * 109.47162 * 146.19704 * 8 7 5 35 35 H 1.08993 * 109.46872 * 150.00218 * 9 7 5 36 36 H 1.08998 * 109.47096 * 29.99939 * 9 7 5 37 37 H 0.96698 * 113.99496 * 60.00245 * 12 10 9 38 38 H 1.09002 * 109.46821 * 300.00103 * 13 10 9 39 39 H 1.08995 * 109.46916 * 59.99526 * 13 10 9 40 40 H 0.97005 * 119.99638 * 359.97438 * 14 13 10 41 41 H 0.97003 * 120.00516 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46835 * 84.12000 * 24 23 4 43 43 H 1.09000 * 109.47685 * 204.12370 * 24 23 4 44 44 H 1.09000 * 109.47080 * 324.12592 * 24 23 4 45 45 H 1.07998 * 119.93511 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5911 1.1936 -0.0058 5 6 4.3344 2.4709 -0.0125 6 8 5.2349 2.6459 -0.8100 7 7 4.0138 3.4417 0.8658 8 6 3.0087 3.1899 1.9014 9 6 4.6707 4.7487 0.7848 10 6 5.9340 4.7389 1.6479 11 1 5.6766 4.4441 2.6653 12 8 6.8741 3.8092 1.1059 13 6 6.5519 6.1386 1.6635 14 7 7.7611 6.1294 2.4904 15 6 8.4884 7.2783 2.6526 16 1 8.1708 8.1910 2.1705 17 6 9.6345 7.2694 3.4357 18 7 10.0219 6.1570 4.0227 19 14 10.6271 8.8365 3.6563 20 1 10.1237 9.5787 4.8399 21 1 12.0573 8.4921 3.8594 22 1 10.4893 9.6844 2.4450 23 6 4.2824 -0.0196 0.0005 24 6 5.7893 -0.0301 0.0000 25 6 3.5834 -1.2081 0.0067 26 6 2.1980 -1.2001 0.0066 27 17 1.3249 -2.7005 0.0142 28 1 -0.3634 0.0057 1.0276 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8928 -0.5089 31 1 1.6552 2.1306 0.0004 32 1 2.0322 3.5212 1.5480 33 1 2.9727 2.1229 2.1210 34 1 3.2732 3.7383 2.8055 35 1 3.9903 5.5202 1.1453 36 1 4.9398 4.9566 -0.2508 37 1 7.1485 4.0100 0.2007 38 1 6.8091 6.4334 0.6461 39 1 5.8348 6.8477 2.0769 40 1 8.0466 5.3095 2.9231 41 1 10.8226 6.1508 4.5703 42 1 6.1537 0.0782 1.0216 43 1 6.1461 -0.9727 -0.4150 44 1 6.1582 0.7969 -0.6068 45 1 4.1169 -2.1471 0.0112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278790139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:20 Heat of formation + Delta-G solvation = -57.410157 kcal Electronic energy + Delta-G solvation = -27313.913221 eV Core-core repulsion = 23357.504447 eV Total energy + Delta-G solvation = -3956.408774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82285 -39.10241 -37.30391 -36.75743 -35.43164 -34.07710 -33.94894 -31.73676 -31.11850 -29.65874 -29.18343 -27.05363 -25.87408 -25.07233 -23.78270 -22.69747 -21.59155 -21.08277 -19.35119 -17.43611 -17.13966 -16.73467 -16.61829 -16.43578 -15.65978 -15.21171 -14.96807 -14.56905 -14.51774 -14.38167 -13.93373 -13.63047 -13.47853 -13.36935 -13.23241 -12.94597 -12.82277 -12.63912 -12.57115 -12.37759 -12.31697 -12.14602 -12.06558 -11.76986 -11.50558 -11.33110 -11.09237 -10.91458 -10.80852 -10.64457 -10.13649 -9.90439 -9.75481 -9.60356 -9.20105 -8.87831 -8.82179 -8.53325 -6.89858 -5.72904 -3.02286 0.47831 0.86517 1.71307 2.51976 2.82128 3.28514 3.44747 3.49521 3.51788 4.19334 4.31098 4.33389 4.58727 4.66411 4.80618 4.89208 4.93639 5.00418 5.06945 5.11939 5.20603 5.22063 5.31400 5.36763 5.47638 5.51427 5.55298 5.63576 5.65617 5.66285 5.71917 5.74467 5.88119 5.98578 6.01893 6.23127 6.26144 6.39011 6.42446 6.53807 6.75857 7.24354 7.70401 8.06764 8.24771 8.45506 9.56697 10.15138 10.50908 11.49452 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.002139 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.947695 B =13086.681967 C =13555.798901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.074 4.074 4 C -0.118 4.118 5 C 0.566 3.434 6 O -0.518 6.518 7 N -0.603 5.603 8 C 0.075 3.925 9 C 0.086 3.914 10 C 0.087 3.913 11 H 0.094 0.906 12 O -0.545 6.545 13 C 0.126 3.874 14 N -0.725 5.725 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.022 4.022 24 C -0.134 4.134 25 C -0.115 4.115 26 C -0.016 4.016 27 Cl -0.066 7.066 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.374 0.626 38 H 0.020 0.980 39 H 0.024 0.976 40 H 0.389 0.611 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.975 -15.762 -8.503 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.093 4.093 4 C -0.121 4.121 5 C 0.354 3.646 6 O -0.394 6.394 7 N -0.336 5.336 8 C -0.068 4.068 9 C -0.037 4.037 10 C 0.026 3.974 11 H 0.112 0.888 12 O -0.349 6.349 13 C -0.003 4.003 14 N -0.370 5.370 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.023 4.023 24 C -0.191 4.191 25 C -0.133 4.133 26 C -0.043 4.043 27 Cl -0.037 7.037 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.221 0.779 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.582 -15.897 -8.353 28.852 hybrid contribution 0.511 0.764 -0.048 0.920 sum -22.071 -15.133 -8.401 28.049 Atomic orbital electron populations 1.20858 0.89881 1.03591 1.03064 1.19628 0.96892 0.91006 1.01670 1.21120 0.92446 0.97685 0.98057 1.19888 0.93660 0.93707 1.04885 1.18114 0.82684 0.82970 0.80848 1.90731 1.29419 1.79847 1.39401 1.47637 1.41069 1.13388 1.31470 1.21928 0.90958 1.02647 0.91314 1.22311 0.95598 0.83292 1.02543 1.22460 0.87280 0.90665 0.96990 0.88806 1.86544 1.62523 1.51864 1.34018 1.21236 0.90510 0.93356 0.95237 1.42238 1.25916 1.11127 1.57684 1.19216 1.04217 0.89123 1.24782 0.91298 1.24763 0.98635 0.97110 1.00458 1.69680 1.26132 1.25479 1.36497 0.86188 0.79576 0.82625 0.77770 1.21747 1.21744 1.20788 1.19910 0.97104 0.90597 0.94669 1.21108 0.89330 1.04557 1.04055 1.20916 0.91648 0.98771 1.02000 1.20975 0.92291 0.86824 1.04215 1.98366 1.76494 1.32139 1.96700 0.90516 0.90991 0.90759 0.84521 0.92514 0.90799 0.90613 0.89490 0.89424 0.77874 0.96190 0.95874 0.77653 0.93511 0.90317 0.91311 0.88173 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.61 36.00 0.35 -0.34 16 2 C -0.09 -0.75 5.88 -104.65 -0.62 -1.37 16 3 C -0.07 -0.65 7.59 -39.19 -0.30 -0.95 16 4 C -0.12 -1.32 4.67 -104.97 -0.49 -1.81 16 5 C 0.57 7.49 6.40 -12.36 -0.08 7.41 16 6 O -0.52 -8.34 13.10 -7.87 -0.10 -8.44 16 7 N -0.60 -7.00 2.86 -182.72 -0.52 -7.52 16 8 C 0.07 0.63 9.11 59.85 0.55 1.17 16 9 C 0.09 1.07 5.12 -4.04 -0.02 1.05 16 10 C 0.09 1.42 3.30 -26.73 -0.09 1.34 16 11 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 12 O -0.54 -10.11 11.81 -48.41 -0.57 -10.69 16 13 C 0.13 2.48 5.92 -4.04 -0.02 2.46 16 14 N -0.72 -18.83 5.49 -59.91 -0.33 -19.15 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 19 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 C -0.02 -0.24 5.91 -104.23 -0.62 -0.85 16 24 C -0.13 -1.53 9.52 36.00 0.34 -1.19 16 25 C -0.11 -1.08 9.44 -39.60 -0.37 -1.46 16 26 C -0.02 -0.15 6.32 -39.38 -0.25 -0.39 16 27 Cl -0.07 -0.53 27.27 -51.86 -1.41 -1.94 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.44 6.89 -51.93 -0.36 0.08 16 31 H 0.14 0.95 6.92 -52.49 -0.36 0.59 16 32 H 0.06 0.34 7.48 -51.93 -0.39 -0.04 16 33 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.09 1.15 7.50 -51.93 -0.39 0.76 16 37 H 0.37 6.53 8.62 45.56 0.39 6.92 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.93 7.54 -40.82 -0.31 10.62 16 41 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 44 H 0.10 1.38 5.73 -51.93 -0.30 1.08 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -33.77 382.92 -9.13 -42.90 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.80 Total: 12.00 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.87 Total: -2.48 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.13 Total: -54.81 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.67 Total: -19.12 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.77 -9.13 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278790139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.509 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds