Wall clock time and date at job start Wed Apr 1 2020 00:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37920 * 119.93247 * 2 1 4 4 C 1.39594 * 119.86540 * 180.27470 * 3 2 1 5 5 C 1.47783 * 120.12922 * 179.70340 * 4 3 2 6 6 O 1.21564 * 119.99625 * 228.89844 * 5 4 3 7 7 N 1.34776 * 120.00056 * 48.90346 * 5 4 3 8 8 C 1.46497 * 120.00079 * 5.26881 * 7 5 4 9 9 C 1.46506 * 119.99706 * 185.26687 * 7 5 4 10 10 C 1.53004 * 109.46885 * 270.00008 * 9 7 5 11 11 H 1.09001 * 109.46970 * 305.00032 * 10 9 7 12 12 O 1.42898 * 109.47279 * 65.00101 * 10 9 7 13 13 C 1.53006 * 109.46857 * 185.00388 * 10 9 7 14 14 N 1.46500 * 109.47069 * 179.97438 * 13 10 9 15 15 C 1.36935 * 119.99856 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00283 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99573 * 180.02562 * 15 14 13 18 18 N 1.31611 * 120.00424 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99489 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46981 * 89.99980 * 19 17 15 21 21 H 1.48503 * 109.47031 * 209.99722 * 19 17 15 22 22 H 1.48491 * 109.47369 * 329.99788 * 19 17 15 23 23 C 1.39634 * 119.73856 * 359.42828 * 4 3 2 24 24 C 1.50696 * 120.07034 * 180.25130 * 23 4 3 25 25 C 1.37878 * 119.86589 * 0.27630 * 23 4 3 26 26 C 1.38488 * 119.93347 * 179.68392 * 2 1 3 27 27 Cl 1.73598 * 119.87062 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.47485 * 270.31553 * 1 2 3 29 29 H 1.09006 * 109.47490 * 30.31904 * 1 2 3 30 30 H 1.09003 * 109.47510 * 150.31876 * 1 2 3 31 31 H 1.08002 * 120.06962 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46667 * 266.19860 * 8 7 5 33 33 H 1.08997 * 109.47073 * 26.19808 * 8 7 5 34 34 H 1.09001 * 109.47162 * 146.19704 * 8 7 5 35 35 H 1.08993 * 109.46872 * 150.00218 * 9 7 5 36 36 H 1.08998 * 109.47096 * 29.99939 * 9 7 5 37 37 H 0.96698 * 113.99496 * 60.00245 * 12 10 9 38 38 H 1.09002 * 109.46821 * 300.00103 * 13 10 9 39 39 H 1.08995 * 109.46916 * 59.99526 * 13 10 9 40 40 H 0.97005 * 119.99638 * 359.97438 * 14 13 10 41 41 H 0.97003 * 120.00516 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46835 * 84.12000 * 24 23 4 43 43 H 1.09000 * 109.47685 * 204.12370 * 24 23 4 44 44 H 1.09000 * 109.47080 * 324.12592 * 24 23 4 45 45 H 1.07998 * 119.93511 * 179.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5911 1.1936 -0.0058 5 6 4.3344 2.4709 -0.0125 6 8 5.2349 2.6459 -0.8100 7 7 4.0138 3.4417 0.8658 8 6 3.0087 3.1899 1.9014 9 6 4.6707 4.7487 0.7848 10 6 5.9340 4.7389 1.6479 11 1 5.6766 4.4441 2.6653 12 8 6.8741 3.8092 1.1059 13 6 6.5519 6.1386 1.6635 14 7 7.7611 6.1294 2.4904 15 6 8.4884 7.2783 2.6526 16 1 8.1708 8.1910 2.1705 17 6 9.6345 7.2694 3.4357 18 7 10.0219 6.1570 4.0227 19 14 10.6271 8.8365 3.6563 20 1 10.1237 9.5787 4.8399 21 1 12.0573 8.4921 3.8594 22 1 10.4893 9.6844 2.4450 23 6 4.2824 -0.0196 0.0005 24 6 5.7893 -0.0301 0.0000 25 6 3.5834 -1.2081 0.0067 26 6 2.1980 -1.2001 0.0066 27 17 1.3249 -2.7005 0.0142 28 1 -0.3634 0.0057 1.0276 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3634 -0.8928 -0.5089 31 1 1.6552 2.1306 0.0004 32 1 2.0322 3.5212 1.5480 33 1 2.9727 2.1229 2.1210 34 1 3.2732 3.7383 2.8055 35 1 3.9903 5.5202 1.1453 36 1 4.9398 4.9566 -0.2508 37 1 7.1485 4.0100 0.2007 38 1 6.8091 6.4334 0.6461 39 1 5.8348 6.8477 2.0769 40 1 8.0466 5.3095 2.9231 41 1 10.8226 6.1508 4.5703 42 1 6.1537 0.0782 1.0216 43 1 6.1461 -0.9727 -0.4150 44 1 6.1582 0.7969 -0.6068 45 1 4.1169 -2.1471 0.0112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278790139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:19 Heat of formation + Delta-G solvation = -79.593577 kcal Electronic energy + Delta-G solvation = -27314.875166 eV Core-core repulsion = 23357.504447 eV Total energy + Delta-G solvation = -3957.370720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68458 -39.98797 -38.59826 -37.47818 -36.52060 -35.84077 -34.78454 -33.22560 -32.41875 -30.68392 -30.21214 -28.01593 -27.16209 -25.92571 -25.05096 -24.00748 -22.72809 -22.28295 -20.23518 -19.22958 -18.33881 -17.84786 -17.49724 -17.17034 -16.79672 -16.56086 -16.19892 -16.17076 -15.46937 -15.28762 -15.06965 -14.96985 -14.60482 -14.25822 -14.23769 -14.02786 -13.91131 -13.67368 -13.49784 -13.25909 -13.20440 -13.05968 -12.95740 -12.85916 -12.78074 -12.62306 -12.41216 -12.18138 -12.08388 -11.99428 -11.81010 -11.74766 -11.11560 -10.97142 -10.82785 -9.91332 -9.58928 -9.52155 -9.01295 -7.94789 -5.24705 -0.27844 0.16687 1.04079 1.46117 1.48833 1.57115 1.58988 1.95044 2.50482 2.55418 3.35904 3.39766 3.54034 3.63113 3.68194 3.79883 3.97823 4.07002 4.15407 4.18645 4.28913 4.36880 4.47823 4.50021 4.56723 4.62983 4.65328 4.70931 4.75706 4.80252 4.82547 4.90348 4.92955 4.99462 5.07200 5.23706 5.25429 5.28811 5.40471 5.45350 5.49610 5.65103 6.25836 6.32850 6.84170 7.11811 7.32262 8.09223 8.31693 9.28706 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.002139 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.947695 B =13086.681967 C =13555.798901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.067 4.067 4 C -0.133 4.133 5 C 0.560 3.440 6 O -0.557 6.557 7 N -0.601 5.601 8 C 0.068 3.932 9 C 0.097 3.903 10 C 0.096 3.904 11 H 0.087 0.913 12 O -0.564 6.564 13 C 0.123 3.877 14 N -0.741 5.741 15 C -0.246 4.246 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.977 3.023 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.268 1.268 23 C -0.041 4.041 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.023 4.023 27 Cl -0.057 7.057 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.376 0.624 38 H 0.023 0.977 39 H 0.041 0.959 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.777 -15.256 -8.746 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.085 4.085 4 C -0.136 4.136 5 C 0.349 3.651 6 O -0.436 6.436 7 N -0.333 5.333 8 C -0.074 4.074 9 C -0.027 4.027 10 C 0.035 3.965 11 H 0.105 0.895 12 O -0.369 6.369 13 C -0.004 4.004 14 N -0.384 5.384 15 C -0.378 4.378 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.193 1.193 23 C -0.042 4.042 24 C -0.185 4.185 25 C -0.134 4.134 26 C -0.050 4.050 27 Cl -0.027 7.027 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.223 0.777 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.456 -15.374 -8.608 30.958 hybrid contribution 1.274 0.541 0.003 1.384 sum -24.182 -14.833 -8.604 29.644 Atomic orbital electron populations 1.20937 0.87866 1.04416 1.04114 1.19939 0.98275 0.90406 1.00134 1.21300 0.91310 0.98885 0.97055 1.19855 0.94716 0.92629 1.06442 1.18522 0.82315 0.83748 0.80531 1.90708 1.31158 1.80615 1.41086 1.47712 1.41194 1.12652 1.31708 1.22179 0.91478 1.03018 0.90679 1.22115 0.94411 0.84814 1.01322 1.22407 0.88382 0.88201 0.97484 0.89548 1.86523 1.63532 1.52620 1.34258 1.21450 0.88800 0.95970 0.94184 1.42467 1.27641 1.09836 1.58470 1.19674 1.04238 0.90130 1.23760 0.90361 1.25656 1.00203 1.00383 1.00944 1.69855 1.26644 1.27810 1.37832 0.85084 0.77317 0.78859 0.78149 1.21093 1.22372 1.19295 1.19914 0.96661 0.91396 0.96216 1.20984 0.90340 1.04322 1.02851 1.21010 0.92145 0.98642 1.01635 1.21127 0.92255 0.87638 1.03930 1.98371 1.76151 1.31602 1.96617 0.89228 0.89410 0.90747 0.82333 0.89255 0.90740 0.90219 0.86258 0.90040 0.77675 0.95869 0.94096 0.79440 0.94066 0.91511 0.89592 0.90877 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.61 71.24 0.68 -0.30 16 2 C -0.09 -1.21 5.88 -19.88 -0.12 -1.33 16 3 C -0.07 -1.02 7.59 22.52 0.17 -0.85 16 4 C -0.13 -2.89 4.67 -20.09 -0.09 -2.99 16 5 C 0.56 14.74 6.40 86.77 0.56 15.30 16 6 O -0.56 -18.56 13.10 8.68 0.11 -18.45 16 7 N -0.60 -13.14 2.86 -850.26 -2.43 -15.57 16 8 C 0.07 0.97 9.11 127.77 1.16 2.13 16 9 C 0.10 2.29 5.12 86.38 0.44 2.73 16 10 C 0.10 3.12 3.30 30.60 0.10 3.22 16 11 H 0.09 2.94 8.14 -2.39 -0.02 2.93 16 12 O -0.56 -21.66 11.81 -136.38 -1.61 -23.27 16 13 C 0.12 4.81 5.92 86.38 0.51 5.32 16 14 N -0.74 -38.90 5.49 -343.44 -1.89 -40.79 16 15 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 18 N -0.97 -61.59 13.06 21.65 0.28 -61.31 16 19 Si 0.98 46.94 29.55 68.60 2.03 48.96 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.04 -0.90 5.91 -19.61 -0.12 -1.02 16 24 C -0.13 -3.10 9.52 71.23 0.68 -2.42 16 25 C -0.12 -2.09 9.44 22.26 0.21 -1.88 16 26 C -0.02 -0.37 6.32 22.40 0.14 -0.22 16 27 Cl -0.06 -0.80 27.27 -2.72 -0.07 -0.87 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 30 H 0.07 0.65 6.89 -2.39 -0.02 0.64 16 31 H 0.16 1.64 6.92 -2.91 -0.02 1.62 16 32 H 0.09 0.72 7.48 -2.39 -0.02 0.70 16 33 H 0.07 1.07 6.30 -2.39 -0.02 1.06 16 34 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.12 2.06 8.07 -2.39 -0.02 2.04 16 36 H 0.08 2.07 7.50 -2.39 -0.02 2.05 16 37 H 0.38 13.78 8.62 -74.06 -0.64 13.14 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.37 21.60 7.54 -92.70 -0.70 20.90 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.07 2.18 5.73 -2.39 -0.01 2.16 16 45 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.46 382.92 1.75 -72.71 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.31 Total: 38.35 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.64 Total: 0.24 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -4.03 Total: -117.67 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.50 Total: -41.72 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.87 kcal Total: -74.46 1.75 -72.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278790139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.883 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds