Wall clock time and date at job start Wed Apr 1 2020 00:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37985 * 120.05852 * 2 1 4 4 C 1.38317 * 120.15869 * 180.26020 * 3 2 1 5 5 C 1.38492 * 120.28063 * 359.47938 * 4 3 2 6 6 Cl 1.73595 * 119.94169 * 180.26091 * 5 4 3 7 7 C 1.38060 * 120.11485 * 0.28293 * 5 4 3 8 8 C 1.39554 * 120.06259 * 179.76315 * 2 1 3 9 9 C 1.47850 * 120.13799 * 359.97438 * 8 2 1 10 10 O 1.21558 * 119.99735 * 310.18638 * 9 8 2 11 11 N 1.34776 * 120.00343 * 130.18847 * 9 8 2 12 12 C 1.46497 * 119.99797 * 4.44226 * 11 9 8 13 13 C 1.46494 * 120.00155 * 184.44209 * 11 9 8 14 14 C 1.53006 * 109.47033 * 89.99599 * 13 11 9 15 15 O 1.42903 * 109.46735 * 65.00307 * 14 13 11 16 16 C 1.42896 * 113.99964 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47485 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47254 * 64.99807 * 17 16 15 19 19 C 1.36937 * 120.00176 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99784 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00217 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47337 * 90.00251 * 23 21 19 25 25 H 1.48499 * 109.47031 * 210.00469 * 23 21 19 26 26 H 1.48506 * 109.46970 * 329.99956 * 23 21 19 27 27 H 1.08994 * 109.47006 * 264.76853 * 1 2 3 28 28 H 1.09003 * 109.46813 * 24.76941 * 1 2 3 29 29 H 1.08996 * 109.46761 * 144.76589 * 1 2 3 30 30 H 1.08002 * 119.92339 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.86107 * 179.76381 * 4 3 2 32 32 H 1.08005 * 120.07996 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47206 * 92.93737 * 12 11 9 34 34 H 1.09000 * 109.47232 * 212.93940 * 12 11 9 35 35 H 1.08997 * 109.47249 * 332.93778 * 12 11 9 36 36 H 1.08994 * 109.47647 * 210.00078 * 13 11 9 37 37 H 1.09007 * 109.47198 * 330.00104 * 13 11 9 38 38 H 1.09000 * 109.46976 * 184.99933 * 14 13 11 39 39 H 1.08994 * 109.47509 * 305.00556 * 14 13 11 40 40 H 1.08998 * 109.47542 * 299.99899 * 16 15 14 41 41 H 1.08999 * 109.47118 * 59.99650 * 16 15 14 42 42 H 1.08999 * 109.47558 * 185.00439 * 17 16 15 43 43 H 1.09005 * 109.46753 * 305.00179 * 17 16 15 44 44 H 0.97003 * 119.99322 * 0.02562 * 18 17 16 45 45 H 0.96999 * 119.99788 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1943 0.0000 4 6 3.5813 1.1967 -0.0054 5 6 4.2818 0.0020 0.0000 6 17 6.0177 0.0153 -0.0001 7 6 3.6019 -1.1996 0.0049 8 6 2.2061 -1.2078 0.0050 9 6 1.4714 -2.4908 0.0109 10 8 0.5802 -2.6771 0.8163 11 7 1.7897 -3.4538 -0.8767 12 6 2.9262 -3.2686 -1.7823 13 6 0.9992 -4.6857 -0.9358 14 6 -0.1505 -4.5067 -1.9294 15 8 0.3797 -4.3342 -3.2452 16 6 -0.6163 -4.1584 -4.2547 17 6 0.0616 -3.9847 -5.6153 18 7 0.7622 -5.2205 -5.9732 19 6 1.4469 -5.3015 -7.1563 20 1 1.4700 -4.4543 -7.8258 21 6 2.1102 -6.4726 -7.4956 22 7 2.7688 -6.5502 -8.6326 23 14 2.0696 -7.9381 -6.3379 24 1 0.9035 -8.7966 -6.6669 25 1 3.3208 -8.7233 -6.4893 26 1 1.9521 -7.4592 -4.9371 27 1 -0.3633 -0.0937 1.0233 28 1 -0.3633 0.9332 -0.4306 29 1 -0.3633 -0.8394 -0.5929 30 1 1.6579 2.1294 0.0004 31 1 4.1174 2.1342 -0.0093 32 1 4.1487 -2.1310 0.0087 33 1 3.8210 -3.7023 -1.3358 34 1 2.7183 -3.7617 -2.7319 35 1 3.0850 -2.2038 -1.9530 36 1 1.6345 -5.5100 -1.2599 37 1 0.5945 -4.9056 0.0522 38 1 -0.7898 -5.3893 -1.9082 39 1 -0.7345 -3.6283 -1.6551 40 1 -1.2650 -5.0339 -4.2816 41 1 -1.2104 -3.2729 -4.0287 42 1 -0.6918 -3.7622 -6.3709 43 1 0.7768 -3.1638 -5.5626 44 1 0.7410 -5.9815 -5.3720 45 1 3.2326 -7.3685 -8.8695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279450511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:39 Heat of formation + Delta-G solvation = -43.704403 kcal Electronic energy + Delta-G solvation = -27360.058733 eV Core-core repulsion = 23404.244284 eV Total energy + Delta-G solvation = -3955.814448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86049 -38.97370 -37.85805 -36.82268 -35.80832 -34.58700 -32.87349 -32.24226 -31.49532 -29.93665 -28.08442 -27.41718 -26.55711 -24.40268 -23.29593 -22.91993 -21.81269 -21.15030 -19.73542 -17.77163 -17.62932 -17.01527 -16.55832 -16.33958 -16.03206 -15.88873 -15.13909 -15.02617 -14.40445 -14.36379 -14.04253 -14.01047 -13.72439 -13.42608 -13.23863 -13.10309 -12.89875 -12.67660 -12.64132 -12.38219 -12.04481 -12.02757 -11.92831 -11.77219 -11.61833 -11.44729 -11.34027 -11.14918 -10.85647 -10.54084 -10.11342 -10.10442 -9.58351 -9.42928 -9.38856 -8.96041 -8.89793 -8.80153 -7.20264 -5.74758 -3.09494 0.50259 0.75129 1.73419 2.39684 2.76158 3.22576 3.39401 3.43757 3.46845 3.83737 4.11600 4.32358 4.44527 4.61839 4.62115 4.82091 4.99080 5.00688 5.08167 5.17305 5.23273 5.24909 5.30542 5.37775 5.39789 5.44139 5.48528 5.55177 5.56020 5.62450 5.69579 5.73206 5.76769 5.81513 5.93271 5.99362 6.03755 6.26534 6.32371 6.49739 6.63742 7.13605 7.41520 7.88658 8.01366 8.44275 9.24235 9.96571 10.17431 11.43743 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.002891 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.560943 B = 9681.308284 C =10710.018920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.030 4.030 3 C -0.114 4.114 4 C -0.087 4.087 5 C -0.047 4.047 6 Cl -0.064 7.064 7 C -0.075 4.075 8 C -0.115 4.115 9 C 0.561 3.439 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.069 3.931 13 C 0.118 3.882 14 C 0.044 3.956 15 O -0.374 6.374 16 C 0.055 3.945 17 C 0.160 3.840 18 N -0.751 5.751 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.936 5.936 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.274 1.274 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.033 0.967 44 H 0.364 0.636 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 15.041 22.188 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.031 4.031 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.074 4.074 6 Cl -0.036 7.036 7 C -0.094 4.094 8 C -0.118 4.118 9 C 0.349 3.651 10 O -0.412 6.412 11 N -0.328 5.328 12 C -0.073 4.073 13 C -0.005 4.005 14 C -0.034 4.034 15 O -0.293 6.293 16 C -0.022 4.022 17 C 0.032 3.968 18 N -0.397 5.397 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.200 1.200 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.197 0.803 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.338 14.980 22.336 26.928 hybrid contribution 0.102 -1.130 0.627 1.296 sum -1.237 13.851 22.962 26.845 Atomic orbital electron populations 1.20861 0.89883 1.02946 1.03553 1.20027 0.96911 0.91383 0.94768 1.20986 0.93246 0.97877 1.01065 1.21220 0.94238 0.97102 0.98015 1.20758 0.85090 0.94818 1.06718 1.98390 1.09269 1.98923 1.96977 1.21248 0.92855 0.97705 0.97630 1.19687 0.92965 0.93670 1.05488 1.18232 0.82897 0.83235 0.80702 1.90778 1.31674 1.80270 1.38521 1.47692 1.31569 1.17645 1.35875 1.22140 0.87192 1.03059 0.94938 1.21599 0.93211 0.86256 0.99406 1.22884 0.96055 1.00272 0.84194 1.87992 1.32926 1.93589 1.14789 1.22842 0.91029 0.99248 0.89075 1.20663 0.95051 0.90706 0.90347 1.42631 1.62737 1.11943 1.22408 1.19068 1.23747 0.99857 0.94573 0.89300 1.24656 0.99826 0.97711 0.96990 1.69709 1.38218 1.27552 1.22905 0.86542 0.77140 0.83686 0.81236 1.21243 1.21803 1.19998 0.89858 0.91157 0.91122 0.84318 0.84441 0.84142 0.92544 0.88658 0.90758 0.89096 0.88302 0.92465 0.93374 0.93445 0.93518 0.94185 0.94862 0.80345 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.89 36.01 0.32 -0.73 16 2 C -0.03 -0.29 5.91 -104.22 -0.62 -0.91 16 3 C -0.11 -0.89 9.67 -39.64 -0.38 -1.27 16 4 C -0.09 -0.68 9.82 -39.46 -0.39 -1.07 16 5 C -0.05 -0.43 6.31 -39.55 -0.25 -0.68 16 6 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 7 C -0.08 -0.74 7.42 -39.15 -0.29 -1.03 16 8 C -0.11 -1.27 4.87 -104.97 -0.51 -1.78 16 9 C 0.56 7.11 6.31 -12.33 -0.08 7.04 16 10 O -0.53 -7.94 15.41 5.32 0.08 -7.86 16 11 N -0.60 -7.16 2.84 -182.70 -0.52 -7.68 16 12 C 0.07 0.78 8.95 59.85 0.54 1.32 16 13 C 0.12 1.37 5.86 -4.04 -0.02 1.34 16 14 C 0.04 0.55 6.28 37.16 0.23 0.79 16 15 O -0.37 -5.88 9.07 -35.23 -0.32 -6.20 16 16 C 0.05 0.85 6.07 37.16 0.23 1.07 16 17 C 0.16 3.08 6.65 -4.04 -0.03 3.06 16 18 N -0.75 -18.07 5.35 -59.91 -0.32 -18.39 16 19 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.94 -29.55 13.97 55.49 0.78 -28.78 16 23 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 29 H 0.07 0.75 7.09 -51.93 -0.37 0.38 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 1.27 6.64 -52.48 -0.35 0.92 16 33 H 0.06 0.54 7.58 -51.93 -0.39 0.14 16 34 H 0.09 1.29 7.07 -51.93 -0.37 0.93 16 35 H 0.07 0.80 5.71 -51.93 -0.30 0.51 16 36 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.10 1.08 7.36 -51.93 -0.38 0.70 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -33.80 385.61 -8.83 -42.63 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.62 Total: 4.94 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.50 Total: 0.07 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.06 Total: -54.84 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.24 Total: -14.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.80 -8.83 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279450511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.074 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds