Wall clock time and date at job start Wed Apr 1 2020 00:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37985 * 120.05852 * 2 1 4 4 C 1.38317 * 120.15869 * 180.26020 * 3 2 1 5 5 C 1.38492 * 120.28063 * 359.47938 * 4 3 2 6 6 Cl 1.73595 * 119.94169 * 180.26091 * 5 4 3 7 7 C 1.38060 * 120.11485 * 0.28293 * 5 4 3 8 8 C 1.39554 * 120.06259 * 179.76315 * 2 1 3 9 9 C 1.47850 * 120.13799 * 359.97438 * 8 2 1 10 10 O 1.21558 * 119.99735 * 310.18638 * 9 8 2 11 11 N 1.34776 * 120.00343 * 130.18847 * 9 8 2 12 12 C 1.46497 * 119.99797 * 4.44226 * 11 9 8 13 13 C 1.46494 * 120.00155 * 184.44209 * 11 9 8 14 14 C 1.53006 * 109.47033 * 89.99599 * 13 11 9 15 15 O 1.42903 * 109.46735 * 65.00307 * 14 13 11 16 16 C 1.42896 * 113.99964 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47485 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47254 * 64.99807 * 17 16 15 19 19 C 1.36937 * 120.00176 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99784 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00217 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47337 * 90.00251 * 23 21 19 25 25 H 1.48499 * 109.47031 * 210.00469 * 23 21 19 26 26 H 1.48506 * 109.46970 * 329.99956 * 23 21 19 27 27 H 1.08994 * 109.47006 * 264.76853 * 1 2 3 28 28 H 1.09003 * 109.46813 * 24.76941 * 1 2 3 29 29 H 1.08996 * 109.46761 * 144.76589 * 1 2 3 30 30 H 1.08002 * 119.92339 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.86107 * 179.76381 * 4 3 2 32 32 H 1.08005 * 120.07996 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47206 * 92.93737 * 12 11 9 34 34 H 1.09000 * 109.47232 * 212.93940 * 12 11 9 35 35 H 1.08997 * 109.47249 * 332.93778 * 12 11 9 36 36 H 1.08994 * 109.47647 * 210.00078 * 13 11 9 37 37 H 1.09007 * 109.47198 * 330.00104 * 13 11 9 38 38 H 1.09000 * 109.46976 * 184.99933 * 14 13 11 39 39 H 1.08994 * 109.47509 * 305.00556 * 14 13 11 40 40 H 1.08998 * 109.47542 * 299.99899 * 16 15 14 41 41 H 1.08999 * 109.47118 * 59.99650 * 16 15 14 42 42 H 1.08999 * 109.47558 * 185.00439 * 17 16 15 43 43 H 1.09005 * 109.46753 * 305.00179 * 17 16 15 44 44 H 0.97003 * 119.99322 * 0.02562 * 18 17 16 45 45 H 0.96999 * 119.99788 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1943 0.0000 4 6 3.5813 1.1967 -0.0054 5 6 4.2818 0.0020 0.0000 6 17 6.0177 0.0153 -0.0001 7 6 3.6019 -1.1996 0.0049 8 6 2.2061 -1.2078 0.0050 9 6 1.4714 -2.4908 0.0109 10 8 0.5802 -2.6771 0.8163 11 7 1.7897 -3.4538 -0.8767 12 6 2.9262 -3.2686 -1.7823 13 6 0.9992 -4.6857 -0.9358 14 6 -0.1505 -4.5067 -1.9294 15 8 0.3797 -4.3342 -3.2452 16 6 -0.6163 -4.1584 -4.2547 17 6 0.0616 -3.9847 -5.6153 18 7 0.7622 -5.2205 -5.9732 19 6 1.4469 -5.3015 -7.1563 20 1 1.4700 -4.4543 -7.8258 21 6 2.1102 -6.4726 -7.4956 22 7 2.7688 -6.5502 -8.6326 23 14 2.0696 -7.9381 -6.3379 24 1 0.9035 -8.7966 -6.6669 25 1 3.3208 -8.7233 -6.4893 26 1 1.9521 -7.4592 -4.9371 27 1 -0.3633 -0.0937 1.0233 28 1 -0.3633 0.9332 -0.4306 29 1 -0.3633 -0.8394 -0.5929 30 1 1.6579 2.1294 0.0004 31 1 4.1174 2.1342 -0.0093 32 1 4.1487 -2.1310 0.0087 33 1 3.8210 -3.7023 -1.3358 34 1 2.7183 -3.7617 -2.7319 35 1 3.0850 -2.2038 -1.9530 36 1 1.6345 -5.5100 -1.2599 37 1 0.5945 -4.9056 0.0522 38 1 -0.7898 -5.3893 -1.9082 39 1 -0.7345 -3.6283 -1.6551 40 1 -1.2650 -5.0339 -4.2816 41 1 -1.2104 -3.2729 -4.0287 42 1 -0.6918 -3.7622 -6.3709 43 1 0.7768 -3.1638 -5.5626 44 1 0.7410 -5.9815 -5.3720 45 1 3.2326 -7.3685 -8.8695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279450511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:38 Heat of formation + Delta-G solvation = -64.729083 kcal Electronic energy + Delta-G solvation = -27360.970431 eV Core-core repulsion = 23404.244284 eV Total energy + Delta-G solvation = -3956.726147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70233 -39.80016 -39.00253 -37.52207 -36.95320 -36.27173 -33.70965 -33.55550 -32.86654 -31.06314 -29.58276 -28.17373 -27.44664 -25.34745 -25.08786 -23.72527 -22.82333 -22.55850 -20.59365 -19.74545 -18.64001 -17.93928 -17.55087 -17.21316 -17.00087 -16.91274 -16.48437 -15.97217 -15.88244 -15.59990 -15.08159 -14.84741 -14.71209 -14.64272 -14.52505 -14.24476 -14.00438 -13.86459 -13.71297 -13.45979 -13.28787 -13.07134 -12.82007 -12.78952 -12.71277 -12.53219 -12.45332 -12.18402 -12.12120 -12.03221 -11.90458 -11.72898 -11.05833 -11.00304 -10.54435 -10.09963 -9.79949 -9.61485 -9.28216 -8.01302 -5.34117 -0.21556 0.07354 1.04375 1.39435 1.42359 1.50240 1.50862 1.89541 2.49847 2.50367 2.72631 3.29910 3.31163 3.66913 3.67744 3.78315 3.97033 4.00923 4.08553 4.17835 4.23829 4.28190 4.38514 4.41203 4.45415 4.50540 4.55632 4.57698 4.61041 4.69465 4.75299 4.80268 4.93330 4.95187 5.01080 5.08114 5.10646 5.14370 5.33708 5.40505 5.63711 5.76047 6.17282 6.22372 6.32102 6.94705 7.09712 7.85781 8.06147 9.20294 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.002891 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.560943 B = 9681.308284 C =10710.018920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 C -0.107 4.107 4 C -0.083 4.083 5 C -0.056 4.056 6 Cl -0.065 7.065 7 C -0.080 4.080 8 C -0.136 4.136 9 C 0.561 3.439 10 O -0.563 6.563 11 N -0.597 5.597 12 C 0.075 3.925 13 C 0.116 3.884 14 C 0.046 3.954 15 O -0.394 6.394 16 C 0.064 3.936 17 C 0.154 3.846 18 N -0.753 5.753 19 C -0.234 4.234 20 H 0.056 0.944 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.956 3.044 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.250 1.250 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.368 0.632 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 15.777 24.163 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.125 4.125 4 C -0.101 4.101 5 C -0.082 4.082 6 Cl -0.036 7.036 7 C -0.099 4.099 8 C -0.139 4.139 9 C 0.350 3.650 10 O -0.443 6.443 11 N -0.328 5.328 12 C -0.067 4.067 13 C -0.007 4.007 14 C -0.032 4.032 15 O -0.314 6.314 16 C -0.013 4.013 17 C 0.028 3.972 18 N -0.399 5.399 19 C -0.365 4.365 20 H 0.074 0.926 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.783 3.217 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.175 1.175 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.201 0.799 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.970 15.744 24.338 29.053 hybrid contribution 0.289 -1.213 -0.011 1.247 sum -1.681 14.530 24.327 28.386 Atomic orbital electron populations 1.20832 0.89607 1.03316 1.03083 1.20266 0.97353 0.91742 0.94990 1.21313 0.93307 0.98290 0.99575 1.21558 0.94458 0.97579 0.96512 1.20891 0.85192 0.95148 1.07011 1.98390 1.09252 1.98926 1.96994 1.21263 0.92517 0.98280 0.97885 1.19686 0.93438 0.93374 1.07409 1.18496 0.82543 0.83720 0.80206 1.90750 1.33028 1.80863 1.39655 1.47771 1.31643 1.17709 1.35675 1.22091 0.87608 1.03146 0.93887 1.21662 0.93174 0.86304 0.99519 1.22985 0.96480 1.00951 0.82768 1.87961 1.33647 1.93843 1.15965 1.22692 0.90578 1.01024 0.86961 1.20836 0.94757 0.88452 0.93143 1.42631 1.62595 1.13751 1.20947 1.19058 1.23303 0.98676 0.95478 0.92599 1.25497 1.00027 1.01097 0.98901 1.69892 1.39889 1.28462 1.25319 0.85389 0.76901 0.79427 0.79994 1.20473 1.22288 1.17498 0.90298 0.88732 0.93184 0.81291 0.82062 0.83959 0.90832 0.90876 0.90465 0.88619 0.87681 0.90791 0.93490 0.92447 0.90747 0.93495 0.95737 0.79914 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 8.89 71.24 0.63 -1.25 16 2 C -0.04 -0.77 5.91 -19.61 -0.12 -0.89 16 3 C -0.11 -1.39 9.67 22.23 0.21 -1.17 16 4 C -0.08 -1.09 9.82 22.35 0.22 -0.87 16 5 C -0.06 -0.94 6.31 22.29 0.14 -0.80 16 6 Cl -0.06 -1.06 28.95 -2.72 -0.08 -1.14 16 7 C -0.08 -1.51 7.42 22.55 0.17 -1.35 16 8 C -0.14 -2.90 4.87 -20.09 -0.10 -3.00 16 9 C 0.56 14.01 6.31 86.79 0.55 14.56 16 10 O -0.56 -16.67 15.41 -3.90 -0.06 -16.73 16 11 N -0.60 -13.92 2.84 -850.20 -2.41 -16.33 16 12 C 0.08 1.65 8.95 127.77 1.14 2.80 16 13 C 0.12 2.55 5.86 86.38 0.51 3.05 16 14 C 0.05 1.06 6.28 71.98 0.45 1.51 16 15 O -0.39 -11.69 9.07 -148.98 -1.35 -13.04 16 16 C 0.06 1.83 6.07 71.98 0.44 2.26 16 17 C 0.15 5.79 6.65 86.38 0.57 6.37 16 18 N -0.75 -35.52 5.35 -343.45 -1.84 -37.36 16 19 C -0.23 -13.52 10.47 84.03 0.88 -12.64 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.98 -63.56 13.97 21.65 0.30 -63.25 16 23 Si 0.96 45.73 27.74 68.60 1.90 47.63 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 29 H 0.05 1.04 7.09 -2.39 -0.02 1.03 16 30 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.14 2.49 6.64 -2.91 -0.02 2.47 16 33 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 34 H 0.07 1.96 7.07 -2.39 -0.02 1.94 16 35 H 0.08 1.64 5.71 -2.39 -0.01 1.62 16 36 H 0.10 2.00 8.07 -2.39 -0.02 1.98 16 37 H 0.11 2.19 7.36 -2.38 -0.02 2.17 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.37 16.69 5.53 -92.71 -0.51 16.17 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -73.65 385.61 3.07 -70.58 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.43 Total: 24.38 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.17 Total: 5.26 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -3.95 Total: -116.95 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.41 Total: -29.77 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -73.65 3.07 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279450511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.853 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds