Wall clock time and date at job start Tue Mar 31 2020 23:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47357 * 269.99706 * 3 2 1 5 5 H 1.48495 * 109.47496 * 29.99926 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00168 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00333 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46853 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.65057 * 179.97438 * 13 11 10 15 15 C 1.54324 * 107.27201 * 181.02592 * 14 13 11 16 16 H 1.08997 * 110.71674 * 140.55532 * 15 14 13 17 17 N 1.46501 * 110.71948 * 263.65261 * 15 14 13 18 18 C 1.34772 * 119.99930 * 273.54875 * 17 15 14 19 19 O 1.21615 * 120.00478 * 359.97438 * 18 17 15 20 20 C 1.47106 * 119.99963 * 180.02562 * 18 17 15 21 21 C 1.32998 * 119.99633 * 179.97438 * 20 18 17 22 22 C 1.51401 * 136.31963 * 359.62764 * 21 20 18 23 23 C 1.53381 * 87.51660 * 206.05764 * 22 21 20 24 24 C 1.51402 * 136.31185 * 180.02562 * 21 20 18 25 25 C 1.55158 * 102.94229 * 22.19182 * 15 14 13 26 26 H 1.09006 * 110.99917 * 82.57513 * 25 15 14 27 27 O 1.42891 * 111.00478 * 206.38214 * 25 15 14 28 28 C 1.47428 * 125.64829 * 359.69548 * 13 11 10 29 29 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46793 * 60.00091 * 10 9 7 31 31 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 32 32 H 1.09001 * 109.87731 * 300.44217 * 14 13 11 33 33 H 1.09000 * 109.87690 * 61.45463 * 14 13 11 34 34 H 0.97002 * 119.99902 * 93.54180 * 17 15 14 35 35 H 1.07995 * 120.00040 * 359.97438 * 20 18 17 36 36 H 1.08997 * 113.56221 * 320.63745 * 22 21 20 37 37 H 1.08997 * 113.55806 * 91.37520 * 22 21 20 38 38 H 1.09000 * 113.96555 * 220.28901 * 23 22 21 39 39 H 1.08995 * 113.70654 * 88.80940 * 23 22 21 40 40 H 1.09003 * 113.56124 * 268.62665 * 24 21 20 41 41 H 1.09003 * 113.56489 * 39.28185 * 24 21 20 42 42 H 0.96705 * 114.00536 * 180.02562 * 27 25 15 43 43 H 1.09002 * 110.36522 * 274.74335 * 28 13 11 44 44 H 1.09002 * 110.36472 * 37.06987 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0017 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2964 -0.0016 13 7 6.0457 -4.4948 -0.0029 14 6 7.4650 -4.8783 -0.0038 15 6 7.5229 -6.4202 -0.0309 16 1 8.3268 -6.7645 -0.6815 17 7 7.6881 -6.9566 1.3223 18 6 8.9218 -7.0904 1.8482 19 8 9.8979 -6.7665 1.1992 20 6 9.0877 -7.6295 3.2068 21 6 10.3052 -7.7621 3.7254 22 6 11.7243 -7.4952 3.2702 23 6 12.1733 -8.5842 4.2526 24 6 10.8911 -8.2539 5.0320 25 6 6.1392 -6.8098 -0.6148 26 1 6.1435 -6.7498 -1.7032 27 8 5.7473 -8.1126 -0.1780 28 6 5.2250 -5.7195 0.0029 29 1 -0.4850 0.8400 0.0004 30 1 3.6439 -3.4306 -0.8924 31 1 3.6433 -3.4326 0.8876 32 1 7.9578 -4.4732 -0.8877 33 1 7.9510 -4.5025 0.8965 34 1 6.9096 -7.2152 1.8399 35 1 8.2210 -7.9176 3.7830 36 1 11.9026 -7.7523 2.2261 37 1 12.0848 -6.4996 3.5288 38 1 13.0902 -8.3441 4.7909 39 1 12.1814 -9.5858 3.8228 40 1 11.0229 -7.4666 5.7742 41 1 10.3853 -9.1323 5.4331 42 1 4.8887 -8.3998 -0.5179 43 1 4.9489 -5.9863 1.0230 44 1 4.3334 -5.5815 -0.6088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281877154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:57 Heat of formation + Delta-G solvation = -68.740080 kcal Electronic energy + Delta-G solvation = -26515.717988 eV Core-core repulsion = 22560.861618 eV Total energy + Delta-G solvation = -3954.856370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72774 -39.66988 -38.64060 -37.88413 -35.80127 -34.18465 -32.47395 -31.60249 -30.41423 -29.07405 -28.11759 -26.14355 -25.65639 -24.20156 -23.43701 -21.63338 -20.76326 -19.57798 -18.69419 -18.03474 -17.76284 -17.29026 -16.73677 -16.49512 -15.87482 -15.65967 -15.49487 -15.07693 -14.99409 -14.74511 -14.45457 -14.25589 -13.84864 -13.59986 -13.46125 -13.03090 -12.83265 -12.82636 -12.49520 -12.35186 -12.34733 -12.08545 -11.94970 -11.40254 -11.38188 -11.28742 -11.03436 -10.90051 -10.70815 -10.61828 -9.95831 -9.89304 -9.65385 -9.57235 -9.26016 -9.03654 -8.70738 -8.54036 -6.96491 -6.32402 -4.04690 1.06032 2.55004 2.81277 2.88380 3.06695 3.08774 3.30997 3.48358 3.50253 3.65079 3.98799 4.02307 4.11843 4.17824 4.30416 4.36454 4.64842 4.65927 4.71805 4.80073 4.93516 5.06266 5.06641 5.11307 5.13821 5.22842 5.25022 5.30979 5.43021 5.45213 5.51142 5.60812 5.67442 5.71323 5.82931 5.88612 5.92707 6.16109 6.20967 6.27424 7.08997 7.30702 7.43167 7.90459 8.03480 8.34298 8.37296 9.13715 10.76652 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002161 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.128358 B =12952.055932 C =13670.458229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.547 3.453 12 O -0.512 6.512 13 N -0.622 5.622 14 C 0.100 3.900 15 C 0.147 3.853 16 H 0.112 0.888 17 N -0.707 5.707 18 C 0.554 3.446 19 O -0.543 6.543 20 C -0.200 4.200 21 C -0.060 4.060 22 C -0.106 4.106 23 C -0.143 4.143 24 C -0.109 4.109 25 C 0.086 3.914 26 H 0.092 0.908 27 O -0.550 6.550 28 C 0.068 3.932 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.387 0.613 43 H 0.078 0.922 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.459 -22.644 5.441 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.385 6.385 13 N -0.361 5.361 14 C -0.024 4.024 15 C 0.041 3.959 16 H 0.130 0.870 17 N -0.358 5.358 18 C 0.343 3.657 19 O -0.422 6.422 20 C -0.220 4.220 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.180 4.180 24 C -0.146 4.146 25 C 0.025 3.975 26 H 0.110 0.890 27 O -0.356 6.356 28 C -0.056 4.056 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.236 0.764 43 H 0.096 0.904 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.664 -20.798 5.275 29.104 hybrid contribution -2.026 -0.490 -0.040 2.085 sum 17.638 -21.288 5.235 28.137 Atomic orbital electron populations 1.69937 1.05888 1.27807 1.47951 1.24711 0.94466 0.98980 0.93135 0.86735 0.81898 0.83256 0.79976 1.19171 1.19896 1.15927 1.22291 0.88156 0.97530 1.58942 0.89388 1.84845 1.09388 0.99802 1.97414 1.23260 0.93460 1.04463 1.05619 1.20026 0.90618 0.80457 0.75315 1.90726 1.58862 1.41018 1.47919 1.48309 1.06702 1.05092 1.75981 1.22387 0.83178 0.93203 1.03637 1.21925 0.97122 0.92043 0.84841 0.86968 1.45573 1.08622 1.65485 1.16137 1.18431 0.82768 0.77799 0.86692 1.90783 1.38710 1.50335 1.62322 1.21531 0.96612 1.07910 0.95973 1.23491 0.94190 0.91275 0.97228 1.22233 0.91546 0.99471 1.01052 1.22729 0.97479 0.99563 0.98269 1.22362 0.96085 1.01423 0.94733 1.23281 0.93187 0.82563 0.98469 0.89016 1.86483 1.42062 1.31247 1.75772 1.23065 0.95405 0.84961 1.02192 0.91908 0.88564 0.88534 0.90100 0.90491 0.75813 0.84934 0.89481 0.88315 0.90351 0.89743 0.88009 0.90336 0.76438 0.90393 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.97 55.49 0.78 -25.47 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.25 5.16 36.01 0.19 -2.06 16 11 C 0.55 9.94 7.87 -10.98 -0.09 9.86 16 12 O -0.51 -11.38 16.19 5.56 0.09 -11.29 16 13 N -0.62 -8.28 3.33 -170.39 -0.57 -8.85 16 14 C 0.10 1.23 6.60 -3.06 -0.02 1.21 16 15 C 0.15 1.40 3.13 -66.09 -0.21 1.20 16 16 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 17 N -0.71 -6.61 4.78 -53.21 -0.25 -6.86 16 18 C 0.55 6.18 7.76 -12.66 -0.10 6.09 16 19 O -0.54 -7.73 14.88 5.26 0.08 -7.66 16 20 C -0.20 -1.78 10.03 -37.80 -0.38 -2.15 16 21 C -0.06 -0.51 6.93 -100.49 -0.70 -1.21 16 22 C -0.11 -0.89 6.99 -27.56 -0.19 -1.08 16 23 C -0.14 -0.84 8.17 -26.21 -0.21 -1.05 16 24 C -0.11 -0.64 7.95 -27.42 -0.22 -0.85 16 25 C 0.09 0.62 4.23 -24.48 -0.10 0.52 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 O -0.55 -3.33 12.64 -35.23 -0.45 -3.77 16 28 C 0.07 0.61 6.41 -2.42 -0.02 0.60 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.10 1.69 7.85 -51.92 -0.41 1.28 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 34 H 0.41 3.14 8.20 -40.82 -0.33 2.80 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.09 0.87 7.49 -51.93 -0.39 0.48 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.39 0.81 9.12 45.56 0.42 1.23 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.72 7.48 -51.93 -0.39 0.33 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -36.84 383.35 -8.81 -45.65 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.73 Total: 1.84 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.83 Total: -0.79 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.05 Total: -41.18 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.28 Total: -22.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.84 -8.81 -45.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281877154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.091 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds