Wall clock time and date at job start Wed Apr 1 2020 00:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 114.00023 * 2 1 4 4 C 1.52997 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47059 * 65.00171 * 4 3 2 6 6 C 1.36939 * 119.99898 * 274.40057 * 5 4 3 7 7 H 1.08002 * 120.00447 * 145.90850 * 6 5 4 8 8 C 1.38815 * 119.99700 * 325.90151 * 6 5 4 9 9 N 1.31616 * 120.00138 * 335.49080 * 8 6 5 10 10 Si 1.86803 * 119.99563 * 155.48664 * 8 6 5 11 11 H 1.48502 * 109.47125 * 60.00565 * 10 8 6 12 12 H 1.48505 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47491 * 300.00056 * 10 8 6 14 14 C 1.46500 * 120.00136 * 94.39279 * 5 4 3 15 15 C 1.53000 * 109.47404 * 270.00169 * 14 5 4 16 16 N 1.46500 * 109.47404 * 180.02562 * 15 14 5 17 17 C 1.34768 * 120.00014 * 180.02562 * 16 15 14 18 18 O 1.21561 * 120.00189 * 359.97438 * 17 16 15 19 19 C 1.47774 * 119.99806 * 180.02562 * 17 16 15 20 20 C 1.39626 * 120.15571 * 0.02562 * 19 17 16 21 21 C 1.37893 * 119.86405 * 179.97438 * 20 19 17 22 22 C 1.38417 * 120.18797 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.84716 * 179.97438 * 22 21 20 24 24 C 1.38280 * 120.31427 * 359.73946 * 22 21 20 25 25 C 1.38152 * 120.12735 * 0.51387 * 24 22 21 26 26 Cl 1.73603 * 120.09412 * 179.76721 * 25 24 22 27 27 H 1.09000 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46784 * 299.99711 * 1 2 3 29 29 H 1.08997 * 109.47197 * 60.00226 * 1 2 3 30 30 H 1.08995 * 109.47040 * 60.00211 * 3 2 1 31 31 H 1.09000 * 109.46787 * 300.00062 * 3 2 1 32 32 H 1.08999 * 109.47286 * 305.00501 * 4 3 2 33 33 H 1.08995 * 109.47569 * 184.99616 * 4 3 2 34 34 H 0.97007 * 120.00180 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46965 * 150.00557 * 14 5 4 36 36 H 1.09001 * 109.47190 * 30.00119 * 14 5 4 37 37 H 1.08995 * 109.46877 * 59.99815 * 15 14 5 38 38 H 1.09001 * 109.46906 * 300.00123 * 15 14 5 39 39 H 0.97000 * 119.99385 * 359.97438 * 16 15 14 40 40 H 1.07998 * 120.06575 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.90830 * 180.02562 * 21 20 19 42 42 H 1.09005 * 109.47044 * 89.99433 * 23 22 21 43 43 H 1.08998 * 109.46888 * 209.99603 * 23 22 21 44 44 H 1.09001 * 109.46673 * 329.99488 * 23 22 21 45 45 H 1.07997 * 119.93937 * 180.28177 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0115 -0.8004 -1.3635 7 1 3.7891 -1.2701 -2.3103 8 6 4.3329 -1.5798 -0.2607 9 7 5.0507 -1.0710 0.7181 10 14 3.7463 -3.3508 -0.1659 11 1 4.2916 -4.1151 -1.3165 12 1 4.2184 -3.9613 1.1029 13 1 2.2624 -3.3838 -0.2084 14 6 4.3805 1.4028 -2.3821 15 6 3.1614 1.6998 -3.2576 16 7 3.5653 2.5381 -4.3891 17 6 2.6508 2.9283 -5.2989 18 8 1.4909 2.5842 -5.1810 19 6 3.0584 3.7735 -6.4405 20 6 4.3901 4.1692 -6.5800 21 6 4.7639 4.9575 -7.6479 22 6 3.8228 5.3574 -8.5808 23 6 4.2397 6.2194 -9.7446 24 6 2.5028 4.9659 -8.4527 25 6 2.1130 4.1805 -7.3851 26 17 0.4544 3.6944 -7.2218 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5684 0.8426 33 1 3.9786 2.1764 0.0901 34 1 5.2750 -1.6155 1.4890 35 1 5.1328 0.8794 -2.9722 36 1 4.7971 2.3387 -2.0098 37 1 2.4091 2.2230 -2.6675 38 1 2.7448 0.7638 -3.6299 39 1 4.4908 2.8130 -4.4829 40 1 5.1260 3.8579 -5.8534 41 1 5.7939 5.2637 -7.7567 42 1 4.5326 5.5842 -10.5806 43 1 3.4051 6.8530 -10.0447 44 1 5.0828 6.8443 -9.4502 45 1 1.7745 5.2776 -9.1866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284669103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:15 Heat of formation + Delta-G solvation = -53.078513 kcal Electronic energy + Delta-G solvation = -27100.430139 eV Core-core repulsion = 23144.209199 eV Total energy + Delta-G solvation = -3956.220940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.27959 -39.63264 -38.89276 -37.49584 -37.32710 -35.71175 -33.97643 -33.22332 -31.83891 -31.03249 -29.43899 -28.06220 -27.17061 -25.74356 -23.86353 -23.79435 -22.90937 -22.16041 -21.36238 -19.14551 -18.62232 -17.55910 -17.17906 -16.75239 -16.65710 -16.58196 -16.33756 -16.06031 -15.87998 -15.60960 -15.35699 -15.07269 -14.92830 -14.73862 -14.39151 -14.25204 -13.63032 -13.48085 -13.42745 -13.16927 -13.02337 -12.80810 -12.68883 -12.46690 -12.40977 -12.34656 -12.24790 -12.23154 -12.11883 -11.91702 -11.71069 -11.54490 -10.65693 -10.43680 -10.36236 -10.10904 -9.93158 -9.65294 -8.58539 -7.76429 -5.31622 -0.32233 0.16096 1.16289 1.45988 1.51248 1.59342 1.80958 2.11022 2.60406 2.68880 3.19755 3.36185 3.56662 3.67951 3.78447 3.91093 4.19166 4.20956 4.23082 4.29419 4.38202 4.41118 4.49552 4.56516 4.66691 4.70839 4.71927 4.79067 4.85649 4.88316 4.89031 4.95189 5.06728 5.11364 5.14296 5.22403 5.25147 5.45184 5.47854 5.72766 5.75353 5.83299 6.45024 6.55475 6.65495 7.21633 7.24542 7.92545 8.38862 9.20542 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.002615 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.168123 B =10703.444162 C =11463.017317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.135 3.865 5 N -0.586 5.586 6 C -0.244 4.244 7 H 0.044 0.956 8 C -0.017 4.017 9 N -0.912 5.912 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.143 3.857 15 C 0.121 3.879 16 N -0.706 5.706 17 C 0.541 3.459 18 O -0.563 6.563 19 C -0.157 4.157 20 C -0.067 4.067 21 C -0.120 4.120 22 C -0.044 4.044 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.004 4.004 26 Cl -0.061 7.061 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.412 0.588 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 18.049 -18.257 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.009 3.991 5 N -0.306 5.306 6 C -0.374 4.374 7 H 0.061 0.939 8 C -0.214 4.214 9 N -0.557 5.557 10 Si 0.770 3.230 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.216 1.216 14 C 0.016 3.984 15 C -0.006 4.006 16 N -0.360 5.360 17 C 0.329 3.671 18 O -0.442 6.442 19 C -0.161 4.161 20 C -0.085 4.085 21 C -0.138 4.138 22 C -0.045 4.045 23 C -0.173 4.173 24 C -0.147 4.147 25 C -0.031 4.031 26 Cl -0.031 7.031 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.250 0.750 40 H 0.176 0.824 41 H 0.188 0.812 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.397 17.489 -17.968 25.077 hybrid contribution -0.864 -1.102 0.496 1.486 sum -1.261 16.387 -17.472 23.987 Atomic orbital electron populations 1.22782 0.82099 1.02349 0.99791 1.88162 1.19085 1.28691 1.95114 1.23334 0.97258 0.83971 0.98054 1.21119 0.89431 0.96746 0.91841 1.43720 1.74604 1.01935 1.10328 1.18825 1.39577 0.82525 0.96472 0.93867 1.25329 0.97509 1.00102 0.98452 1.70051 1.37397 1.37518 1.10721 0.85778 0.78406 0.82295 0.76505 1.20518 1.21984 1.21577 1.21043 0.92914 0.95165 0.89272 1.21929 0.99617 0.92491 0.86554 1.45771 1.12442 1.52262 1.25497 1.18641 0.85363 0.80313 0.82778 1.90839 1.19555 1.57351 1.76473 1.19790 0.95507 1.03947 0.96894 1.21612 0.92911 0.95291 0.98703 1.21515 1.01568 0.97501 0.93201 1.20509 0.91651 0.95385 0.96910 1.20971 1.03339 0.98533 0.94498 1.21185 0.97919 0.98694 0.96952 1.21294 0.86015 0.98976 0.96853 1.98406 1.16901 1.90384 1.97435 0.90252 0.93200 0.94698 0.93535 0.94987 0.90818 0.91850 0.94171 0.92669 0.91588 0.93564 0.94944 0.74999 0.82422 0.81241 0.89297 0.90276 0.89143 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.39 -18.18 9.97 -148.98 -1.48 -19.66 16 3 C 0.05 2.17 6.28 71.98 0.45 2.63 16 4 C 0.13 6.16 5.83 86.38 0.50 6.67 16 5 N -0.59 -28.12 2.45 -702.00 -1.72 -29.84 16 6 C -0.24 -13.39 8.75 84.03 0.73 -12.66 16 7 H 0.04 2.46 7.94 -2.91 -0.02 2.43 16 8 C -0.02 -0.93 4.95 84.86 0.42 -0.51 16 9 N -0.91 -52.87 11.37 21.65 0.25 -52.62 16 10 Si 0.94 46.85 29.62 68.60 2.03 48.88 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 13 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 14 C 0.14 5.43 5.82 86.38 0.50 5.93 16 15 C 0.12 4.45 6.00 86.38 0.52 4.97 16 16 N -0.71 -20.47 5.51 -466.06 -2.57 -23.04 16 17 C 0.54 17.44 7.77 86.77 0.67 18.11 16 18 O -0.56 -22.84 13.97 -3.91 -0.05 -22.89 16 19 C -0.16 -3.91 5.88 -20.07 -0.12 -4.02 16 20 C -0.07 -1.07 9.54 22.52 0.21 -0.86 16 21 C -0.12 -1.36 9.68 22.23 0.22 -1.15 16 22 C -0.04 -0.53 5.89 -19.81 -0.12 -0.64 16 23 C -0.12 -0.60 10.00 71.24 0.71 0.11 16 24 C -0.13 -2.19 9.47 22.26 0.21 -1.98 16 25 C 0.00 -0.09 6.35 22.60 0.14 0.06 16 26 Cl -0.06 -1.77 26.02 -2.72 -0.07 -1.84 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.30 6.46 -2.39 -0.02 1.28 16 32 H 0.07 3.96 5.38 -2.39 -0.01 3.95 16 33 H 0.06 2.53 7.84 -2.39 -0.02 2.51 16 34 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 35 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 36 H 0.07 2.16 7.86 -2.39 -0.02 2.15 16 37 H 0.05 1.84 6.46 -2.39 -0.02 1.82 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 8.68 6.51 -92.71 -0.60 8.08 16 40 H 0.16 1.75 6.41 -2.91 -0.02 1.73 16 41 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 42 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 44 H 0.09 0.21 8.08 -2.39 -0.02 0.19 16 45 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -74.42 385.77 3.10 -71.33 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.40 Total: 10.84 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.32 Total: 18.85 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.04 Total: -105.50 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.54 Total: -42.55 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -74.42 3.10 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284669103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.247 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds