Wall clock time and date at job start Tue Mar 31 2020 23:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47448 * 270.00699 * 3 2 1 5 5 H 1.48506 * 109.46951 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.47221 * 150.00161 * 3 2 1 7 7 C 1.38796 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00056 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00264 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47047 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99622 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99879 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99876 * 180.27463 * 13 11 10 15 15 C 1.53000 * 109.46947 * 185.52857 * 14 13 11 16 16 N 1.46501 * 115.55020 * 273.19974 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.69665 * 16 15 14 18 18 O 1.21739 * 120.00339 * 354.97305 * 17 16 15 19 19 C 1.41797 * 119.99569 * 174.97509 * 17 16 15 20 20 C 1.33462 * 118.78461 * 179.97438 * 19 17 16 21 21 O 1.34347 * 123.07872 * 180.43483 * 20 19 17 22 22 C 1.45354 * 117.48408 * 343.65156 * 21 20 19 23 23 C 1.53487 * 108.26020 * 47.47966 * 22 21 20 24 24 C 1.50415 * 118.79153 * 359.73391 * 19 17 16 25 25 C 1.52999 * 117.49917 * 127.53522 * 15 14 13 26 26 C 1.52994 * 117.50013 * 58.87186 * 15 14 13 27 27 H 0.97002 * 119.99781 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46899 * 60.00392 * 10 9 7 29 29 H 1.08998 * 109.47150 * 299.99930 * 10 9 7 30 30 H 0.97003 * 119.99716 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.46944 * 305.53028 * 14 13 11 32 32 H 1.09000 * 109.47171 * 65.52814 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.69193 * 16 15 14 34 34 H 1.07997 * 118.45931 * 0.41543 * 20 19 17 35 35 H 1.09006 * 109.70470 * 167.16655 * 22 21 20 36 36 H 1.08999 * 109.70740 * 287.74247 * 22 21 20 37 37 H 1.09000 * 109.71015 * 56.98862 * 23 22 21 38 38 H 1.09004 * 109.70372 * 177.56430 * 23 22 21 39 39 H 1.09004 * 109.45122 * 282.35753 * 24 19 17 40 40 H 1.09005 * 109.45398 * 42.29843 * 24 19 17 41 41 H 1.09001 * 117.49770 * 359.97438 * 25 15 14 42 42 H 1.08992 * 117.50176 * 145.02129 * 25 15 14 43 43 H 1.09002 * 117.50027 * 214.97681 * 26 15 14 44 44 H 1.09003 * 117.49971 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7359 0.0051 15 6 7.7580 -6.2357 -0.1357 16 7 7.7688 -6.9959 1.1167 17 6 8.7221 -6.7602 2.0398 18 8 9.6264 -5.9825 1.7961 19 6 8.6716 -7.4182 3.2949 20 6 9.6284 -7.1673 4.1909 21 8 9.6697 -7.7481 5.4016 22 6 8.4573 -8.3933 5.8778 23 6 7.9075 -9.2765 4.7493 24 6 7.5389 -8.3690 3.5693 25 6 8.7174 -6.6817 -1.2409 26 6 7.2146 -6.9363 -1.3825 27 1 -0.4850 0.8401 0.0004 28 1 3.6432 -3.4318 -0.8907 29 1 3.6439 -3.4314 0.8893 30 1 5.4289 -5.2435 -0.0011 31 1 7.9511 -4.2049 -0.8281 32 1 7.9147 -4.3776 0.9431 33 1 7.0898 -7.6687 1.2815 34 1 10.4060 -6.4646 3.9304 35 1 8.6859 -9.0087 6.7480 36 1 7.7196 -7.6370 6.1461 37 1 8.6672 -9.9949 4.4414 38 1 7.0202 -9.8061 5.0963 39 1 6.6395 -7.8022 3.8101 40 1 7.3565 -8.9810 2.6860 41 1 9.1577 -5.9065 -1.8681 42 1 9.3562 -7.5408 -1.0365 43 1 6.8655 -7.9629 -1.2712 44 1 6.6662 -6.3287 -2.1025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285909078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:09 Heat of formation + Delta-G solvation = -99.315650 kcal Electronic energy + Delta-G solvation = -26572.051750 eV Core-core repulsion = 22615.869523 eV Total energy + Delta-G solvation = -3956.182226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80720 -40.89156 -40.18934 -38.51586 -35.50029 -35.18014 -34.66941 -33.56894 -32.43065 -31.35694 -27.98993 -27.51475 -26.72690 -25.56663 -23.68891 -22.80808 -21.76624 -21.06013 -19.94495 -19.84190 -18.93724 -18.11515 -17.70467 -17.29743 -17.07960 -16.90062 -16.74235 -16.34656 -16.26794 -15.84207 -15.65297 -15.18706 -14.99105 -14.92404 -14.70112 -14.53871 -14.33947 -14.05304 -13.65066 -13.50736 -13.40222 -13.33515 -13.01302 -12.67292 -12.46628 -12.30879 -11.95479 -11.86474 -11.82170 -11.65308 -11.51039 -11.17355 -11.08059 -10.81290 -10.52995 -10.22481 -10.11548 -9.51665 -9.00193 -8.51814 -6.22353 0.33757 0.97641 1.30786 1.46195 1.53419 1.54285 2.00238 2.10068 2.24880 2.30479 2.36249 2.68421 2.83812 2.86556 3.45861 3.69613 3.73523 3.75572 3.83251 3.93811 3.96683 4.17941 4.20168 4.24086 4.33353 4.45725 4.50975 4.56363 4.58713 4.71791 4.72731 4.76295 4.92624 4.96125 5.07395 5.16543 5.17937 5.21953 5.30656 5.53596 5.70974 6.11571 6.17197 6.43408 6.57745 6.93834 7.16250 7.28281 8.60410 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002306 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.973735 B =12138.659705 C =13063.994639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.526 4.526 8 H 0.065 0.935 9 S -0.181 6.181 10 C -0.107 4.107 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.704 5.704 14 C 0.161 3.839 15 C 0.070 3.930 16 N -0.684 5.684 17 C 0.569 3.431 18 O -0.593 6.593 19 C -0.328 4.328 20 C 0.161 3.839 21 O -0.321 6.321 22 C 0.041 3.959 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.162 4.162 26 C -0.135 4.135 27 H 0.277 0.723 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.417 0.583 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.416 0.584 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.360 -27.404 6.611 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.673 4.673 8 H 0.084 0.916 9 S 0.046 5.954 10 C -0.258 4.258 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.358 5.358 14 C 0.036 3.964 15 C -0.018 4.018 16 N -0.337 5.337 17 C 0.363 3.637 18 O -0.476 6.476 19 C -0.332 4.332 20 C 0.093 3.907 21 O -0.232 6.232 22 C -0.032 4.032 23 C -0.188 4.188 24 C -0.110 4.110 25 C -0.201 4.201 26 C -0.173 4.173 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.256 0.744 34 H 0.184 0.816 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.218 -25.278 6.628 31.856 hybrid contribution -1.635 -0.553 -0.011 1.726 sum 16.583 -25.831 6.617 31.401 Atomic orbital electron populations 1.70009 1.07187 1.28982 1.49208 1.25523 0.95257 1.02130 0.92986 0.85900 0.80641 0.79838 0.80201 1.18699 1.18338 1.16333 1.22440 0.90044 0.96748 1.58095 0.91649 1.84823 1.06654 1.06377 1.97593 1.23243 0.95316 0.99529 1.07705 1.20076 0.89626 0.83227 0.75230 1.90706 1.59518 1.43976 1.50248 1.45671 1.07936 1.06869 1.75289 1.20809 0.80459 0.93521 1.01588 1.20538 1.09640 0.89545 0.82083 1.45101 1.31303 1.40872 1.16458 1.16987 0.81082 0.80967 0.84705 1.90818 1.36484 1.39258 1.81045 1.20117 1.05817 1.11006 0.96292 1.22923 0.96028 0.88958 0.82824 1.86275 1.39156 1.66959 1.30803 1.23921 0.84619 0.96596 0.98084 1.22215 1.03621 0.97933 0.95039 1.20384 0.94879 0.95640 1.00087 1.23387 0.93858 1.03631 0.99196 1.23488 0.96069 1.02753 0.94961 0.91368 0.86292 0.86738 0.74528 0.91236 0.93671 0.74439 0.81636 0.85037 0.90366 0.90447 0.86952 0.90043 0.88778 0.88172 0.87828 0.85143 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.97 21.65 0.30 -55.23 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 45.31 27.74 68.60 1.90 47.22 16 4 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 7 C -0.53 -30.43 10.04 67.95 0.68 -29.75 16 8 H 0.07 3.95 8.03 -2.91 -0.02 3.93 16 9 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 10 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 11 C 0.53 18.77 7.85 87.66 0.69 19.45 16 12 O -0.57 -25.49 15.85 -3.04 -0.05 -25.54 16 13 N -0.70 -17.15 5.43 -463.06 -2.51 -19.67 16 14 C 0.16 4.08 5.66 86.38 0.49 4.57 16 15 C 0.07 1.20 1.73 3.60 0.01 1.21 16 16 N -0.68 -10.39 5.37 -431.63 -2.32 -12.71 16 17 C 0.57 12.17 7.21 85.12 0.61 12.78 16 18 O -0.59 -17.90 15.13 -4.47 -0.07 -17.97 16 19 C -0.33 -5.34 5.69 -20.16 -0.11 -5.46 16 20 C 0.16 2.83 10.46 66.74 0.70 3.53 16 21 O -0.32 -4.85 10.47 -76.16 -0.80 -5.65 16 22 C 0.04 0.32 7.15 72.15 0.52 0.83 16 23 C -0.15 -0.83 6.24 30.88 0.19 -0.64 16 24 C -0.07 -0.61 5.15 29.88 0.15 -0.46 16 25 C -0.16 -2.46 10.11 30.62 0.31 -2.15 16 26 C -0.14 -1.39 9.91 30.62 0.30 -1.09 16 27 H 0.28 15.54 8.31 -92.71 -0.77 14.76 16 28 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.42 6.98 8.35 -92.71 -0.77 6.21 16 31 H 0.07 1.93 7.88 -2.39 -0.02 1.91 16 32 H 0.04 1.47 7.16 -2.39 -0.02 1.45 16 33 H 0.42 3.52 6.90 -92.71 -0.64 2.88 16 34 H 0.17 3.25 7.21 -2.91 -0.02 3.23 16 35 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 0.46 7.06 -2.38 -0.02 0.44 16 41 H 0.10 1.62 8.04 -2.39 -0.02 1.61 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -82.80 382.70 0.44 -82.36 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.41 Total: 14.96 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.44 Total: 2.49 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -4.53 Total: -87.61 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.91 Total: -49.16 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.22 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -82.80 0.44 -82.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285909078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.958 kcal (2) G-P(sol) polarization free energy of solvation -82.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds