Wall clock time and date at job start Tue Mar 31 2020 23:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 119.99729 * 2 1 4 4 H 1.48500 * 109.46883 * 269.99573 * 3 2 1 5 5 H 1.48499 * 109.47337 * 29.99405 * 3 2 1 6 6 H 1.48502 * 109.47134 * 149.99637 * 3 2 1 7 7 C 1.38799 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99267 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99994 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00578 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99587 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99698 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.88960 * 34.29921 * 14 13 11 16 16 C 1.55156 * 111.00764 * 270.42271 * 14 13 11 17 17 C 1.54371 * 102.92304 * 206.45557 * 16 14 13 18 18 N 1.47023 * 107.28781 * 22.13715 * 17 16 14 19 19 C 1.34773 * 125.64513 * 181.06041 * 18 17 16 20 20 O 1.21619 * 119.99727 * 175.04435 * 19 18 17 21 21 C 1.47099 * 120.00579 * 355.03753 * 19 18 17 22 22 C 1.32087 * 118.87231 * 79.32922 * 21 19 18 23 23 C 1.50274 * 122.57515 * 180.15230 * 22 21 19 24 24 O 1.42892 * 110.14197 * 344.80059 * 23 22 21 25 25 C 1.43271 * 113.10226 * 50.33910 * 24 23 22 26 26 C 1.50419 * 118.87764 * 259.60554 * 21 19 18 27 27 C 1.47420 * 108.70354 * 1.09200 * 18 17 16 28 28 H 0.97004 * 119.99853 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46818 * 299.99488 * 10 9 7 30 30 H 1.08995 * 109.47048 * 59.99485 * 10 9 7 31 31 H 0.96996 * 120.00109 * 0.02562 * 13 11 10 32 32 H 1.09008 * 110.71860 * 324.79009 * 16 14 13 33 33 H 1.09002 * 110.72118 * 88.05995 * 16 14 13 34 34 H 1.09003 * 109.84349 * 262.72520 * 17 16 14 35 35 H 1.09003 * 109.90216 * 141.57669 * 17 16 14 36 36 H 1.07992 * 118.71432 * 0.37518 * 22 21 19 37 37 H 1.09006 * 109.49588 * 224.50043 * 23 22 21 38 38 H 1.08995 * 109.08236 * 104.84520 * 23 22 21 39 39 H 1.08997 * 109.64442 * 171.47118 * 25 24 23 40 40 H 1.08999 * 109.63780 * 50.84648 * 25 24 23 41 41 H 1.08992 * 109.45448 * 283.35023 * 26 21 19 42 42 H 1.09007 * 109.45161 * 43.30940 * 26 21 19 43 43 H 1.08996 * 110.37233 * 217.03561 * 27 18 17 44 44 H 1.09000 * 110.36624 * 94.70835 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0019 15 1 1.4057 -7.7842 -0.5709 16 6 2.1269 -8.2315 1.4508 17 6 2.2711 -9.7606 1.2957 18 7 3.0350 -10.0046 0.0634 19 6 3.3560 -11.2150 -0.4350 20 8 3.9151 -11.3004 -1.5117 21 6 3.0301 -12.4327 0.3231 22 6 1.7932 -12.8945 0.2872 23 6 1.3683 -14.1285 1.0322 24 8 2.5157 -14.8716 1.4482 25 6 3.4884 -14.0696 2.1290 26 6 4.1155 -13.1059 1.1178 27 6 3.3925 -8.7062 -0.5362 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 -0.8895 30 1 3.1245 -3.7313 0.8904 31 1 3.8009 -6.1835 0.0004 32 1 2.8978 -7.8368 2.1128 33 1 1.1333 -7.9723 1.8166 34 1 1.2854 -10.2193 1.2178 35 1 2.8069 -10.1715 2.1515 36 1 1.0592 -12.3667 -0.3034 37 1 0.7506 -14.7502 0.3840 38 1 0.7908 -13.8345 1.9086 39 1 4.2615 -14.7113 2.5515 40 1 3.0040 -13.5025 2.9238 41 1 4.7679 -13.6608 0.4437 42 1 4.6978 -12.3522 1.6480 43 1 3.3414 -8.7634 -1.6234 44 1 4.3899 -8.4030 -0.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293557744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:11 Heat of formation + Delta-G solvation = -122.095306 kcal Electronic energy + Delta-G solvation = -26287.097482 eV Core-core repulsion = 22329.927456 eV Total energy + Delta-G solvation = -3957.170026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67731 -40.72410 -39.83741 -38.50659 -35.49321 -34.78426 -34.57786 -32.23957 -32.08879 -30.77030 -29.43584 -27.67484 -27.07592 -24.94294 -24.45294 -22.70635 -21.79244 -21.36054 -19.85651 -19.38768 -18.49857 -18.12700 -17.65066 -17.46427 -17.11219 -16.87466 -16.46012 -16.38296 -16.10576 -15.73461 -15.63972 -15.15259 -14.83548 -14.65177 -14.52528 -14.42412 -14.00921 -13.80715 -13.69929 -13.59073 -13.52655 -13.16327 -12.98038 -12.88544 -12.72645 -12.57887 -12.52709 -12.01415 -11.93553 -11.72719 -11.29865 -11.14162 -11.00831 -10.54934 -10.27204 -10.21426 -10.13783 -9.87413 -8.65840 -8.34643 -6.12151 0.60605 1.24788 1.32267 1.42509 1.44757 1.54993 1.57323 1.75211 2.26801 2.32825 2.90358 2.99755 3.19122 3.31305 3.44168 3.62294 3.69588 3.89741 3.91134 3.94000 4.13761 4.16425 4.23641 4.27289 4.31825 4.41863 4.50010 4.52777 4.53954 4.65953 4.70286 4.72557 4.76426 4.93107 4.95306 5.02280 5.07084 5.20501 5.40578 5.42590 5.45069 6.13374 6.20080 6.23194 6.44659 6.85831 7.07133 7.19821 8.74369 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.001731 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.277984 B =16168.053990 C =16401.400530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.560 6.560 13 N -0.703 5.703 14 C 0.135 3.865 15 H 0.082 0.918 16 C -0.138 4.138 17 C 0.107 3.893 18 N -0.609 5.609 19 C 0.570 3.430 20 O -0.581 6.581 21 C -0.157 4.157 22 C -0.141 4.141 23 C 0.087 3.913 24 O -0.398 6.398 25 C 0.061 3.939 26 C -0.105 4.105 27 C 0.105 3.895 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.419 0.581 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -28.027 7.616 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.437 6.437 13 N -0.357 5.357 14 C 0.029 3.971 15 H 0.100 0.900 16 C -0.177 4.177 17 C -0.015 4.015 18 N -0.342 5.342 19 C 0.360 3.640 20 O -0.462 6.462 21 C -0.160 4.160 22 C -0.160 4.160 23 C 0.012 3.988 24 O -0.317 6.317 25 C -0.015 4.015 26 C -0.143 4.143 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.257 0.743 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.682 -28.581 6.995 30.411 hybrid contribution 1.807 1.927 -0.521 2.692 sum 9.489 -26.654 6.473 29.024 Atomic orbital electron populations 1.70180 1.07929 1.28576 1.48040 1.26110 0.95955 1.03282 0.93801 0.84971 0.78255 0.76150 0.78721 1.19483 1.20349 1.18140 1.23210 0.95380 0.92049 1.58769 0.89862 1.85562 1.10457 0.99172 1.97057 1.23375 1.03628 0.94162 1.07007 1.20013 0.86159 0.86474 0.74679 1.90702 1.17295 1.85949 1.49747 1.45519 1.10464 1.03982 1.75781 1.21941 0.97124 0.80393 0.97627 0.89975 1.23067 1.04474 0.93844 0.96294 1.22218 0.96890 0.95949 0.86407 1.48427 1.54780 1.04622 1.26347 1.18665 0.77471 0.83299 0.84587 1.90823 1.44798 1.87103 1.23429 1.20747 0.97396 0.95854 1.02000 1.23628 0.95585 0.98733 0.98044 1.21708 0.88073 0.90255 0.98809 1.88127 1.31183 1.35848 1.76586 1.22826 0.91991 0.93781 0.92933 1.20992 0.95944 0.99226 0.98118 1.22333 0.98546 0.81966 0.99014 0.92024 0.87234 0.86838 0.74314 0.88438 0.89796 0.89965 0.88306 0.85816 0.86081 0.88620 0.86459 0.90558 0.90467 0.88437 0.90908 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.55 -30.50 9.50 67.95 0.65 -29.86 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.05 20.57 -56.49 -1.16 -9.21 16 10 C -0.13 -4.83 6.16 71.23 0.44 -4.39 16 11 C 0.54 18.19 7.85 87.65 0.69 18.87 16 12 O -0.56 -24.08 15.55 -3.02 -0.05 -24.12 16 13 N -0.70 -15.34 5.22 -435.96 -2.27 -17.61 16 14 C 0.14 2.67 3.37 46.38 0.16 2.83 16 15 H 0.08 2.08 7.63 -2.39 -0.02 2.06 16 16 C -0.14 -2.06 6.65 31.80 0.21 -1.85 16 17 C 0.11 1.24 6.40 86.75 0.56 1.79 16 18 N -0.61 -10.40 3.33 -815.96 -2.71 -13.11 16 19 C 0.57 12.22 7.09 86.57 0.61 12.83 16 20 O -0.58 -17.90 17.34 -4.09 -0.07 -17.97 16 21 C -0.16 -2.44 4.82 -18.59 -0.09 -2.53 16 22 C -0.14 -1.75 9.48 24.59 0.23 -1.51 16 23 C 0.09 0.78 7.04 71.10 0.50 1.28 16 24 O -0.40 -5.19 10.83 -148.98 -1.61 -6.80 16 25 C 0.06 0.50 6.88 72.02 0.50 1.00 16 26 C -0.11 -1.22 6.08 29.80 0.18 -1.04 16 27 C 0.10 1.83 6.57 86.86 0.57 2.40 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 31 H 0.42 6.23 8.54 -92.71 -0.79 5.44 16 32 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 0.84 8.04 -2.39 -0.02 0.82 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 1.49 7.99 -2.91 -0.02 1.47 16 37 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 44 H 0.10 1.32 8.00 -2.39 -0.02 1.31 16 Total: -1.00 -83.09 384.13 0.32 -82.77 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.22 Total: 14.98 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.67 Total: 1.03 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.70 Total: -85.62 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.73 Total: -48.89 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -83.09 0.32 -82.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293557744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.329 kcal (2) G-P(sol) polarization free energy of solvation -83.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds