Wall clock time and date at job start Tue Mar 31 2020 23:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46994 * 269.99506 * 3 2 1 5 5 H 1.48497 * 109.47389 * 29.99833 * 3 2 1 6 6 H 1.48506 * 109.47112 * 149.99846 * 3 2 1 7 7 C 1.38796 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00366 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47015 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99917 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99536 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99950 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.88602 * 325.70260 * 14 13 11 16 16 C 1.55163 * 111.00350 * 89.57893 * 14 13 11 17 17 C 1.54323 * 102.93998 * 153.57808 * 16 14 13 18 18 N 1.47022 * 107.27180 * 337.81116 * 17 16 14 19 19 C 1.34778 * 125.64691 * 178.97576 * 18 17 16 20 20 O 1.21734 * 120.00205 * 174.96778 * 19 18 17 21 21 C 1.41801 * 119.99723 * 354.96996 * 19 18 17 22 22 C 1.33457 * 118.78538 * 79.56624 * 21 19 18 23 23 O 1.34353 * 123.07698 * 180.36253 * 22 21 19 24 24 C 1.45354 * 117.48254 * 343.70320 * 23 22 21 25 25 C 1.53479 * 108.26857 * 47.46994 * 24 23 22 26 26 C 1.50418 * 118.78550 * 259.29289 * 21 19 18 27 27 C 1.47460 * 108.72330 * 358.97164 * 18 17 16 28 28 H 0.96993 * 119.99783 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46995 * 300.00300 * 10 9 7 30 30 H 1.08993 * 109.47093 * 60.00275 * 10 9 7 31 31 H 0.96996 * 120.00804 * 0.02562 * 13 11 10 32 32 H 1.08997 * 110.72104 * 271.94607 * 16 14 13 33 33 H 1.09007 * 110.71578 * 35.04062 * 16 14 13 34 34 H 1.08999 * 109.87979 * 97.23052 * 17 16 14 35 35 H 1.08999 * 109.88207 * 218.23502 * 17 16 14 36 36 H 1.07998 * 118.46614 * 0.39233 * 22 21 19 37 37 H 1.08993 * 109.70821 * 167.16593 * 24 23 22 38 38 H 1.09004 * 109.70462 * 287.73533 * 24 23 22 39 39 H 1.09000 * 109.70367 * 56.98733 * 25 24 23 40 40 H 1.09002 * 109.70750 * 177.56849 * 25 24 23 41 41 H 1.09001 * 109.45849 * 282.38576 * 26 21 19 42 42 H 1.08998 * 109.45177 * 42.32962 * 26 21 19 43 43 H 1.08997 * 110.35504 * 265.25527 * 27 18 17 44 44 H 1.09006 * 110.40366 * 142.91491 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0867 -2.9845 0.0001 11 6 5.5732 -3.2325 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 7.4908 -4.7358 -0.0005 15 1 8.0124 -3.9698 -0.5744 16 6 8.0415 -4.8170 1.4478 17 6 9.2936 -5.7056 1.2921 18 7 9.1214 -6.4906 0.0609 19 6 10.0085 -7.3743 -0.4377 20 8 9.7220 -8.0373 -1.4177 21 6 11.2754 -7.5319 0.1794 22 6 11.3643 -8.2760 1.2837 23 8 12.5184 -8.4769 1.9415 24 6 13.7532 -8.1672 1.2399 25 6 13.6043 -6.7838 0.5920 26 6 12.4706 -6.8594 -0.4385 27 6 7.8175 -6.1513 -0.5383 28 1 -0.4849 0.8400 -0.0004 29 1 3.6440 -3.4314 0.8904 30 1 3.6435 -3.4317 -0.8895 31 1 5.4292 -5.2434 -0.0007 32 1 8.3142 -3.8268 1.8128 33 1 7.3138 -5.2842 2.1114 34 1 10.1836 -5.0813 1.2123 35 1 9.3842 -6.3720 2.1498 36 1 10.4666 -8.7387 1.6663 37 1 14.5837 -8.1550 1.9456 38 1 13.9362 -8.9166 0.4699 39 1 13.3634 -6.0443 1.3557 40 1 14.5345 -6.5089 0.0946 41 1 12.8012 -7.4313 -1.3055 42 1 12.1986 -5.8512 -0.7511 43 1 7.0566 -6.8633 -0.2188 44 1 7.8914 -6.1362 -1.6257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294702340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:03 Heat of formation + Delta-G solvation = -90.057971 kcal Electronic energy + Delta-G solvation = -26419.247935 eV Core-core repulsion = 22463.467151 eV Total energy + Delta-G solvation = -3955.780783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14780 -40.05776 -39.21018 -37.54301 -34.63729 -34.21550 -32.46473 -32.41310 -30.98558 -29.73317 -28.23307 -26.27764 -25.64124 -25.05427 -23.48224 -21.77074 -20.89430 -20.48625 -19.04777 -18.13292 -17.85468 -17.38265 -16.88283 -16.58810 -16.27450 -15.75351 -15.32374 -15.10493 -14.96681 -14.71642 -14.40208 -14.16389 -13.89134 -13.73440 -13.69171 -13.44262 -13.27106 -13.20539 -12.82128 -12.76625 -12.53592 -12.06178 -11.88015 -11.71856 -11.45446 -11.29201 -11.19940 -11.14581 -11.02920 -10.64472 -10.25738 -9.88711 -9.62998 -9.15849 -9.03464 -9.01392 -8.90375 -8.53876 -6.95072 -6.31054 -4.03333 1.32401 2.16498 2.50053 2.76101 2.85456 2.89087 3.28971 3.32492 3.48032 3.61108 4.01625 4.16055 4.17525 4.28959 4.30887 4.35455 4.64173 4.66547 4.67984 4.71649 4.76688 4.86612 4.88530 4.91875 5.07968 5.08806 5.22950 5.24172 5.31122 5.40933 5.49485 5.53028 5.63748 5.64457 5.71230 5.75971 5.81755 5.91309 5.97531 6.41571 6.73898 7.10506 7.48543 7.78783 7.91923 8.38005 8.39636 9.14929 10.78127 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.001839 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.658780 B =15225.572253 C =15536.419096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.728 5.728 14 C 0.137 3.863 15 H 0.106 0.894 16 C -0.146 4.146 17 C 0.106 3.894 18 N -0.613 5.613 19 C 0.592 3.408 20 O -0.537 6.537 21 C -0.289 4.289 22 C 0.112 3.888 23 O -0.313 6.313 24 C 0.054 3.946 25 C -0.156 4.156 26 C -0.060 4.060 27 C 0.100 3.900 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.163 0.837 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.922 -17.883 4.268 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.382 5.382 14 C 0.030 3.970 15 H 0.123 0.877 16 C -0.185 4.185 17 C -0.017 4.017 18 N -0.349 5.349 19 C 0.382 3.618 20 O -0.414 6.414 21 C -0.293 4.293 22 C 0.046 3.954 23 O -0.225 6.225 24 C -0.020 4.020 25 C -0.194 4.194 26 C -0.097 4.097 27 C -0.023 4.023 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.180 0.820 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 27.985 -16.693 3.907 32.819 hybrid contribution -1.190 -0.568 -0.207 1.335 sum 26.795 -17.261 3.700 32.088 Atomic orbital electron populations 1.69940 1.05906 1.27783 1.47968 1.24717 0.94460 0.98972 0.93173 0.86733 0.81860 0.83287 0.79938 1.19207 1.19935 1.15945 1.22311 0.88218 0.97560 1.58883 0.89350 1.84789 1.09370 0.99877 1.97441 1.23282 0.93718 1.04547 1.05971 1.20310 0.90674 0.82079 0.74831 1.90704 1.58736 1.42106 1.47454 1.45815 1.06288 1.08416 1.77662 1.21956 0.82397 0.96428 0.96203 0.87652 1.23111 0.96587 1.00976 0.97816 1.22025 0.99073 0.93920 0.86667 1.48511 1.18606 1.41767 1.25972 1.16421 0.83324 0.78564 0.83488 1.90864 1.78677 1.44923 1.26934 1.19967 0.96357 1.10231 1.02793 1.22411 0.89116 0.93159 0.90744 1.86247 1.13383 1.81198 1.41623 1.23524 0.84457 0.96643 0.97355 1.22227 0.99937 0.97560 0.99640 1.20144 0.91127 1.00724 0.97720 1.22375 0.85318 0.94979 0.99630 0.91922 0.88326 0.88344 0.76324 0.89004 0.89870 0.90912 0.91092 0.82023 0.87338 0.90902 0.90127 0.89366 0.90329 0.90254 0.90701 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.52 27.74 -169.99 -4.71 16.81 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.29 6.16 36.01 0.22 -2.06 16 11 C 0.53 8.78 7.85 -10.99 -0.09 8.70 16 12 O -0.52 -10.40 15.55 5.56 0.09 -10.31 16 13 N -0.73 -8.26 5.22 -51.72 -0.27 -8.53 16 14 C 0.14 1.39 3.37 -65.78 -0.22 1.17 16 15 H 0.11 1.28 7.63 -51.93 -0.40 0.88 16 16 C -0.15 -1.23 6.65 -24.89 -0.17 -1.40 16 17 C 0.11 0.77 6.33 -3.06 -0.02 0.75 16 18 N -0.61 -5.68 3.33 -173.84 -0.58 -6.26 16 19 C 0.59 6.46 6.80 -14.90 -0.10 6.36 16 20 O -0.54 -7.99 17.38 5.16 0.09 -7.90 16 21 C -0.29 -2.42 4.59 -105.07 -0.48 -2.90 16 22 C 0.11 0.80 10.34 29.06 0.30 1.10 16 23 O -0.31 -2.16 10.48 -14.90 -0.16 -2.31 16 24 C 0.05 0.24 7.15 37.41 0.27 0.50 16 25 C -0.16 -0.68 6.24 -26.28 -0.16 -0.84 16 26 C -0.06 -0.40 5.90 -27.82 -0.16 -0.57 16 27 C 0.10 0.93 6.53 -2.51 -0.02 0.92 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.40 3.46 8.54 -40.82 -0.35 3.11 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.16 0.96 7.98 -52.49 -0.42 0.54 16 37 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 44 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -36.21 380.79 -8.08 -44.29 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.64 Total: -0.42 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.42 Total: -0.11 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.07 Total: -40.31 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.02 Total: -20.53 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.21 -8.08 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.764 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds