Wall clock time and date at job start Tue Mar 31 2020 23:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48498 * 109.47509 * 270.00441 * 3 2 1 5 5 H 1.48504 * 109.46977 * 30.00602 * 3 2 1 6 6 H 1.48499 * 109.46729 * 149.99999 * 3 2 1 7 7 C 1.38803 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99922 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99667 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00095 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00107 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00208 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.85213 * 336.19678 * 14 13 11 16 16 C 1.54055 * 113.69762 * 107.46390 * 14 13 11 17 17 C 1.53784 * 86.98425 * 139.98915 * 16 14 13 18 18 H 1.08998 * 113.61516 * 219.98117 * 17 16 14 19 19 N 1.46504 * 113.61318 * 89.16427 * 17 16 14 20 20 C 1.34776 * 119.99844 * 105.86063 * 19 17 16 21 21 O 1.21279 * 120.00092 * 0.02562 * 20 19 17 22 22 C 1.50703 * 119.99751 * 180.02562 * 20 19 17 23 23 C 1.53003 * 119.80283 * 250.98064 * 22 20 19 24 24 C 1.52998 * 60.65178 * 247.69071 * 23 22 20 25 25 H 1.09001 * 119.80826 * 113.33694 * 24 23 22 26 26 C 1.54487 * 118.06737 * 269.59283 * 24 23 22 27 27 O 1.44421 * 104.79872 * 38.87240 * 26 24 23 28 28 C 1.44425 * 105.27967 * 40.51065 * 27 26 24 29 29 C 1.53781 * 87.17387 * 334.57247 * 17 16 14 30 30 H 0.96999 * 119.99920 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47028 * 60.00104 * 10 9 7 32 32 H 1.08996 * 109.47689 * 300.00094 * 10 9 7 33 33 H 0.97010 * 119.99910 * 359.97438 * 13 11 10 34 34 H 1.09007 * 113.61114 * 25.48875 * 16 14 13 35 35 H 1.08990 * 113.69631 * 254.51088 * 16 14 13 36 36 H 0.97003 * 120.00092 * 285.86322 * 19 17 16 37 37 H 1.09004 * 117.42717 * 140.01265 * 23 22 20 38 38 H 1.08995 * 117.38853 * 355.38903 * 23 22 20 39 39 H 1.08997 * 110.37332 * 157.70540 * 26 24 23 40 40 H 1.09004 * 110.37288 * 280.04199 * 26 24 23 41 41 H 1.08999 * 110.37470 * 200.65665 * 28 27 26 42 42 H 1.09007 * 110.46197 * 78.36416 * 28 27 26 43 43 H 1.08998 * 113.60955 * 140.02103 * 29 17 16 44 44 H 1.08997 * 113.61449 * 270.83945 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0007 14 6 2.3302 -7.7151 0.0008 15 1 1.3210 -7.7891 0.4057 16 6 2.5102 -8.4436 -1.3446 17 6 2.8719 -9.6944 -0.5262 18 1 3.6917 -10.2728 -0.9521 19 7 1.7144 -10.5212 -0.1756 20 6 1.5035 -11.6901 -0.8125 21 8 2.2722 -12.0578 -1.6755 22 6 0.3125 -12.5403 -0.4522 23 6 0.5177 -13.8572 0.2993 24 6 0.0186 -13.8889 -1.1466 25 1 0.6512 -14.3078 -1.9291 26 6 -1.5068 -13.8612 -1.3898 27 8 -2.0214 -12.9430 -0.4009 28 6 -1.0699 -11.8574 -0.3579 29 6 3.3099 -8.7397 0.5969 30 1 -0.4850 0.8400 0.0004 31 1 3.1244 -3.7313 0.8895 32 1 3.1244 -3.7314 -0.8904 33 1 3.8008 -6.1835 0.0004 34 1 3.3366 -8.0589 -1.9423 35 1 1.5866 -8.5464 -1.9141 36 1 1.0997 -10.2273 0.5149 37 1 -0.1982 -14.1047 1.0832 38 1 1.5439 -14.1748 0.4834 39 1 -1.7244 -13.4982 -2.3943 40 1 -1.9324 -14.8540 -1.2437 41 1 -1.1599 -11.3109 0.5809 42 1 -1.2197 -11.1856 -1.2031 43 1 3.0312 -9.0814 1.5937 44 1 4.3548 -8.4369 0.5299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295089169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:27 Heat of formation + Delta-G solvation = -61.139915 kcal Electronic energy + Delta-G solvation = -26136.173906 eV Core-core repulsion = 22181.647104 eV Total energy + Delta-G solvation = -3954.526802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41726 -40.33754 -39.04536 -37.89792 -34.85869 -34.27194 -32.57424 -32.44531 -29.50423 -29.04105 -26.40841 -26.06938 -25.56459 -24.96917 -23.24028 -21.25978 -20.66844 -20.06923 -19.90090 -18.12624 -17.84075 -16.87503 -16.47156 -16.37951 -16.01120 -15.90305 -15.60558 -15.16017 -14.89226 -14.82396 -14.55771 -14.13516 -13.89130 -13.37899 -13.34631 -13.24855 -12.94222 -12.84407 -12.75351 -12.51805 -12.23936 -12.01292 -11.97629 -11.14441 -11.10442 -11.07727 -11.04943 -10.90460 -10.74872 -10.69938 -10.16468 -10.14834 -9.83657 -9.51024 -9.41041 -9.09100 -8.91068 -8.26647 -6.52640 -6.23848 -3.94632 2.03484 2.56518 2.93984 3.00283 3.00880 3.20833 3.26520 3.30485 3.33633 3.68745 3.95602 3.98979 4.08554 4.18191 4.18805 4.26829 4.37995 4.61797 4.64009 4.74000 4.92940 5.06321 5.08736 5.11423 5.12261 5.15324 5.22381 5.26219 5.27369 5.35689 5.41705 5.54553 5.55173 5.61752 5.75939 5.83366 5.85958 6.10432 6.15359 6.18050 6.58875 7.05038 7.57418 7.65094 7.77979 8.33020 8.55253 9.21539 10.83562 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.001797 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.818264 B =15580.940389 C =16399.136593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.728 5.728 14 C 0.127 3.873 15 H 0.114 0.886 16 C -0.164 4.164 17 C 0.122 3.878 18 H 0.108 0.892 19 N -0.705 5.705 20 C 0.567 3.433 21 O -0.534 6.534 22 C -0.218 4.218 23 C -0.104 4.104 24 C -0.161 4.161 25 H 0.134 0.866 26 C 0.068 3.932 27 O -0.366 6.366 28 C 0.085 3.915 29 C -0.152 4.152 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.404 0.596 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -28.356 0.829 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.381 5.381 14 C 0.021 3.979 15 H 0.131 0.869 16 C -0.204 4.204 17 C 0.016 3.984 18 H 0.126 0.874 19 N -0.356 5.356 20 C 0.353 3.647 21 O -0.410 6.410 22 C -0.222 4.222 23 C -0.141 4.141 24 C -0.180 4.180 25 H 0.152 0.848 26 C -0.008 4.008 27 O -0.284 6.284 28 C 0.008 3.992 29 C -0.191 4.191 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.239 0.761 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.994 -28.833 0.329 28.989 hybrid contribution 2.438 1.684 0.100 2.965 sum 5.432 -27.148 0.430 27.690 Atomic orbital electron populations 1.70015 1.05951 1.27480 1.46812 1.24999 0.95039 0.99052 0.94521 0.86163 0.79401 0.81544 0.78359 1.20266 1.20735 1.19701 1.22866 0.94902 0.91636 1.59010 0.90920 1.85395 1.04904 0.96361 1.96725 1.23544 1.06623 0.95414 1.04946 1.20370 0.86598 0.86396 0.74696 1.90695 1.15394 1.85599 1.47452 1.45970 1.09813 1.05020 1.77341 1.22524 0.98974 0.80408 0.96022 0.86850 1.24014 1.03334 0.95240 0.97820 1.21708 0.88996 0.90858 0.96829 0.87436 1.45616 1.28401 1.20790 1.40803 1.18989 0.84557 0.80439 0.80693 1.90719 1.47034 1.71813 1.31483 1.23163 0.96349 0.91110 1.11546 1.22936 1.03179 0.93504 0.94520 1.24178 0.97695 0.98140 0.97967 0.84804 1.23030 0.90038 0.94827 0.92931 1.89198 1.45814 1.33528 1.59880 1.22824 0.83219 0.89775 1.03420 1.23738 1.00961 0.95520 0.98852 0.92164 0.89193 0.89198 0.76626 0.88619 0.90514 0.76067 0.87244 0.87227 0.90783 0.88016 0.87987 0.90647 0.90057 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.46 7.85 -10.99 -0.09 9.38 16 12 O -0.52 -11.26 15.46 5.55 0.09 -11.17 16 13 N -0.73 -8.82 5.36 -52.88 -0.28 -9.10 16 14 C 0.13 1.29 4.13 -66.98 -0.28 1.01 16 15 H 0.11 1.33 7.46 -51.93 -0.39 0.94 16 16 C -0.16 -1.57 7.70 -25.77 -0.20 -1.77 16 17 C 0.12 0.98 4.30 -67.11 -0.29 0.70 16 18 H 0.11 0.96 7.50 -51.93 -0.39 0.57 16 19 N -0.71 -5.49 5.23 -53.01 -0.28 -5.76 16 20 C 0.57 5.45 7.50 -10.98 -0.08 5.37 16 21 O -0.53 -7.04 16.47 5.56 0.09 -6.95 16 22 C -0.22 -1.66 2.87 -154.09 -0.44 -2.11 16 23 C -0.10 -0.65 9.70 -26.73 -0.26 -0.91 16 24 C -0.16 -1.12 6.93 -89.05 -0.62 -1.73 16 25 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 26 C 0.07 0.44 7.53 37.94 0.29 0.73 16 27 O -0.37 -3.15 11.31 -35.23 -0.40 -3.55 16 28 C 0.08 0.62 7.12 37.93 0.27 0.89 16 29 C -0.15 -1.04 7.57 -25.92 -0.20 -1.24 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.40 3.65 8.73 -40.82 -0.36 3.29 16 34 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 2.42 8.58 -40.82 -0.35 2.07 16 37 H 0.11 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -36.70 386.98 -9.44 -46.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.52 Total: 2.75 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.47 Total: -5.33 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.17 Total: -40.12 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.22 Total: -21.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.70 -9.44 -46.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295089169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.997 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds