Wall clock time and date at job start Tue Mar 31 2020 23:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 119.99708 * 2 1 4 4 H 1.48501 * 109.47080 * 269.99731 * 3 2 1 5 5 H 1.48494 * 109.47519 * 29.99885 * 3 2 1 6 6 H 1.48508 * 109.47091 * 150.00067 * 3 2 1 7 7 C 1.38801 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00488 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99344 * 179.97438 * 7 2 1 10 10 C 1.81007 * 99.99699 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47099 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00070 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00140 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46899 * 177.06495 * 14 13 11 16 16 H 1.09000 * 113.04373 * 52.44867 * 15 14 13 17 17 C 1.53949 * 113.76592 * 184.20083 * 15 14 13 18 18 C 1.53944 * 86.29252 * 137.90970 * 17 15 14 19 19 N 1.47577 * 86.23754 * 336.33906 * 18 17 15 20 20 C 1.34788 * 134.48890 * 204.69890 * 19 18 17 21 21 O 1.21741 * 119.99514 * 185.44932 * 20 19 18 22 22 C 1.41794 * 119.99960 * 5.45403 * 20 19 18 23 23 C 1.33454 * 118.78325 * 187.61267 * 22 20 19 24 24 O 1.34358 * 123.07796 * 180.11175 * 23 22 20 25 25 C 1.45342 * 117.54485 * 344.21612 * 24 23 22 26 26 C 1.53481 * 108.26534 * 47.22716 * 25 24 23 27 27 C 1.50416 * 118.78946 * 7.87385 * 22 20 19 28 28 H 0.96994 * 120.00474 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46789 * 59.99974 * 10 9 7 30 30 H 1.09002 * 109.47158 * 300.00660 * 10 9 7 31 31 H 0.97002 * 119.99977 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46627 * 57.06863 * 14 13 11 33 33 H 1.09001 * 109.47359 * 297.06728 * 14 13 11 34 34 H 1.08994 * 113.74675 * 23.55920 * 17 15 14 35 35 H 1.09008 * 113.74130 * 252.25398 * 17 15 14 36 36 H 1.09004 * 113.76762 * 90.68958 * 18 17 15 37 37 H 1.08992 * 113.77201 * 221.97699 * 18 17 15 38 38 H 1.08000 * 118.46140 * 0.38498 * 23 22 20 39 39 H 1.09004 * 109.70684 * 287.53230 * 25 24 23 40 40 H 1.09002 * 109.73947 * 166.93570 * 25 24 23 41 41 H 1.09008 * 109.70846 * 177.60341 * 26 25 24 42 42 H 1.08996 * 109.70995 * 56.98704 * 26 25 24 43 43 H 1.08993 * 109.45471 * 282.36506 * 27 22 20 44 44 H 1.09005 * 109.45173 * 42.32520 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2963 0.0006 13 7 6.0457 -4.4946 0.0010 14 6 7.4908 -4.7357 0.0005 15 6 7.7567 -6.2405 0.0754 16 1 7.2218 -6.8068 -0.6871 17 6 9.2492 -6.6022 0.1840 18 6 8.8174 -7.6465 1.2294 19 7 7.6248 -6.8024 1.4374 20 6 6.7644 -6.6181 2.4585 21 8 5.7870 -5.9077 2.3101 22 6 6.9978 -7.2517 3.7053 23 6 6.0568 -7.1795 4.6489 24 8 6.1881 -7.7454 5.8604 25 6 7.2314 -8.7437 6.0263 26 6 8.5273 -8.1910 5.4174 27 6 8.2992 -7.9753 3.9178 28 1 -0.4850 0.8400 -0.0004 29 1 3.6433 -3.4318 -0.8896 30 1 3.6439 -3.4314 0.8903 31 1 5.4290 -5.2434 0.0011 32 1 7.9414 -4.2438 0.8625 33 1 7.9257 -4.3350 -0.9151 34 1 9.8661 -5.8017 0.5922 35 1 9.6627 -7.0372 -0.7259 36 1 8.5940 -8.6257 0.8059 37 1 9.4757 -7.6983 2.0966 38 1 5.1451 -6.6447 4.4268 39 1 6.9464 -9.6620 5.5128 40 1 7.3811 -8.9469 7.0867 41 1 9.3374 -8.9048 5.5670 42 1 8.7806 -7.2424 5.8908 43 1 8.2644 -8.9408 3.4133 44 1 9.1161 -7.3809 3.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298982007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:51 Heat of formation + Delta-G solvation = -49.125142 kcal Electronic energy + Delta-G solvation = -27131.146794 eV Core-core repulsion = 23177.140991 eV Total energy + Delta-G solvation = -3954.005803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25735 -40.10927 -38.82436 -37.90052 -34.86391 -34.08605 -32.33988 -32.03240 -30.33195 -29.70635 -27.75067 -26.25752 -25.50774 -24.84240 -23.29471 -22.44688 -20.34353 -20.06205 -19.03402 -17.89929 -17.68895 -16.87933 -16.68123 -16.40476 -16.05061 -15.93071 -15.25565 -15.08298 -14.85369 -14.62184 -14.49896 -14.21176 -13.75692 -13.71502 -13.50493 -13.18079 -13.11254 -12.73551 -12.70980 -12.67438 -12.36289 -11.91812 -11.85188 -11.64118 -11.44739 -11.36768 -11.16199 -10.92425 -10.85222 -10.46242 -9.85671 -9.75796 -9.30522 -9.08096 -8.91075 -8.75119 -8.67645 -8.36947 -6.78818 -6.19366 -3.89266 1.14194 2.48749 2.83399 2.93209 3.15287 3.22324 3.39846 3.46028 3.59085 3.78746 4.03853 4.07292 4.19481 4.36357 4.42468 4.46749 4.56508 4.65469 4.68833 4.75561 4.83325 4.87565 4.91297 4.95308 5.01054 5.12715 5.19602 5.24726 5.26801 5.38923 5.48728 5.52944 5.61127 5.65076 5.76152 5.89678 5.96048 6.00865 6.24178 6.75810 6.85227 7.50230 7.86873 8.04209 8.09389 8.52407 8.73492 9.27178 10.90113 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002599 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.454479 B =10768.895062 C =12134.801641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.094 3.906 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.517 4.517 8 H 0.088 0.912 9 S -0.145 6.145 10 C -0.119 4.119 11 C 0.535 3.465 12 O -0.530 6.530 13 N -0.720 5.720 14 C 0.125 3.875 15 C 0.124 3.876 16 H 0.099 0.901 17 C -0.145 4.145 18 C 0.090 3.910 19 N -0.642 5.642 20 C 0.592 3.408 21 O -0.536 6.536 22 C -0.317 4.317 23 C 0.162 3.838 24 O -0.309 6.309 25 C 0.052 3.948 26 C -0.160 4.160 27 C -0.074 4.074 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.402 0.598 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.182 0.818 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.001 -25.497 7.255 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.665 4.665 8 H 0.106 0.894 9 S 0.081 5.919 10 C -0.270 4.270 11 C 0.321 3.679 12 O -0.406 6.406 13 N -0.374 5.374 14 C -0.001 4.001 15 C 0.021 3.979 16 H 0.117 0.883 17 C -0.183 4.183 18 C -0.032 4.032 19 N -0.380 5.380 20 C 0.386 3.614 21 O -0.415 6.415 22 C -0.321 4.321 23 C 0.094 3.906 24 O -0.220 6.220 25 C -0.022 4.022 26 C -0.197 4.197 27 C -0.111 4.111 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.237 0.763 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.199 0.801 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 23.341 -23.412 7.565 33.913 hybrid contribution -0.923 -0.929 -0.158 1.319 sum 22.417 -24.340 7.407 33.909 Atomic orbital electron populations 1.69945 1.05908 1.27631 1.48523 1.24717 0.94448 0.98938 0.93313 0.86722 0.81952 0.83260 0.79846 1.19275 1.20046 1.15894 1.22346 0.88419 0.97496 1.58226 0.89445 1.84699 1.09082 1.00684 1.97416 1.23234 0.94349 1.03700 1.05720 1.20156 0.90458 0.82250 0.74996 1.90668 1.58823 1.42369 1.48772 1.45737 1.06737 1.08167 1.76736 1.21372 0.83041 0.93086 1.02560 1.23143 0.95541 0.94707 0.84503 0.88328 1.23574 0.95273 0.99447 1.00044 1.23500 0.85890 0.95181 0.98651 1.50077 1.29969 1.44168 1.13802 1.16275 0.81177 0.80889 0.83058 1.90891 1.27670 1.39629 1.83358 1.19908 0.99926 1.14761 0.97532 1.23062 0.97200 0.88367 0.81924 1.86301 1.53504 1.52850 1.29295 1.23552 0.86190 0.89689 1.02766 1.22245 0.97861 1.03031 0.96595 1.20612 0.94862 0.99745 0.95855 0.92056 0.88853 0.88365 0.76310 0.91276 0.90530 0.88452 0.89255 0.89785 0.88891 0.80142 0.90874 0.87329 0.89539 0.90254 0.90988 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.69 13.97 55.49 0.78 -26.91 16 2 C 0.09 2.87 5.50 -17.43 -0.10 2.78 16 3 Si 0.86 22.77 27.74 -169.99 -4.71 18.05 16 4 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.24 -6.26 6.74 56.52 0.38 -5.88 16 7 C -0.52 -15.75 10.04 30.94 0.31 -15.44 16 8 H 0.09 2.78 8.03 -52.49 -0.42 2.36 16 9 S -0.15 -3.96 18.55 -107.50 -1.99 -5.96 16 10 C -0.12 -2.63 6.16 36.00 0.22 -2.41 16 11 C 0.54 10.93 7.85 -10.99 -0.09 10.84 16 12 O -0.53 -12.60 15.86 5.56 0.09 -12.51 16 13 N -0.72 -11.22 4.31 -60.29 -0.26 -11.48 16 14 C 0.12 1.54 5.37 -4.04 -0.02 1.52 16 15 C 0.12 1.03 4.28 -66.67 -0.29 0.75 16 16 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 17 C -0.14 -0.70 7.86 -25.79 -0.20 -0.90 16 18 C 0.09 0.43 7.06 -2.98 -0.02 0.41 16 19 N -0.64 -5.84 3.47 -173.47 -0.60 -6.44 16 20 C 0.59 7.18 7.61 -14.90 -0.11 7.07 16 21 O -0.54 -8.65 14.36 5.15 0.07 -8.58 16 22 C -0.32 -3.07 5.70 -105.08 -0.60 -3.67 16 23 C 0.16 1.64 10.46 29.06 0.30 1.94 16 24 O -0.31 -2.78 10.47 -14.91 -0.16 -2.94 16 25 C 0.05 0.27 7.15 37.41 0.27 0.54 16 26 C -0.16 -0.75 6.23 -26.37 -0.16 -0.92 16 27 C -0.07 -0.44 4.02 -27.91 -0.11 -0.55 16 28 H 0.27 7.84 8.31 -40.82 -0.34 7.50 16 29 H 0.09 1.90 8.14 -51.91 -0.42 1.48 16 30 H 0.10 2.14 8.14 -51.92 -0.42 1.72 16 31 H 0.40 5.78 7.70 -40.82 -0.31 5.46 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.32 4.95 -51.93 -0.26 0.06 16 38 H 0.18 1.99 7.23 -52.49 -0.38 1.61 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.34 7.70 -51.93 -0.40 -0.06 16 44 H 0.09 0.48 5.58 -51.93 -0.29 0.19 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -39.11 372.14 -8.07 -47.18 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.29 Total: 2.01 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.60 Total: 1.96 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.09 Total: -44.83 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.01 Total: -24.03 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.99 Total: -5.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.11 -8.07 -47.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.946 kcal (2) G-P(sol) polarization free energy of solvation -39.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds