Wall clock time and date at job start Tue Mar 31 2020 23:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 119.99708 * 2 1 4 4 H 1.48501 * 109.47080 * 269.99731 * 3 2 1 5 5 H 1.48494 * 109.47519 * 29.99885 * 3 2 1 6 6 H 1.48508 * 109.47091 * 150.00067 * 3 2 1 7 7 C 1.38801 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00488 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99344 * 179.97438 * 7 2 1 10 10 C 1.81007 * 99.99699 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47099 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00070 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00140 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46899 * 177.06495 * 14 13 11 16 16 H 1.09000 * 113.04373 * 52.44867 * 15 14 13 17 17 C 1.53949 * 113.76592 * 184.20083 * 15 14 13 18 18 C 1.53944 * 86.29252 * 137.90970 * 17 15 14 19 19 N 1.47577 * 86.23754 * 336.33906 * 18 17 15 20 20 C 1.34788 * 134.48890 * 204.69890 * 19 18 17 21 21 O 1.21741 * 119.99514 * 185.44932 * 20 19 18 22 22 C 1.41794 * 119.99960 * 5.45403 * 20 19 18 23 23 C 1.33454 * 118.78325 * 187.61267 * 22 20 19 24 24 O 1.34358 * 123.07796 * 180.11175 * 23 22 20 25 25 C 1.45342 * 117.54485 * 344.21612 * 24 23 22 26 26 C 1.53481 * 108.26534 * 47.22716 * 25 24 23 27 27 C 1.50416 * 118.78946 * 7.87385 * 22 20 19 28 28 H 0.96994 * 120.00474 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46789 * 59.99974 * 10 9 7 30 30 H 1.09002 * 109.47158 * 300.00660 * 10 9 7 31 31 H 0.97002 * 119.99977 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46627 * 57.06863 * 14 13 11 33 33 H 1.09001 * 109.47359 * 297.06728 * 14 13 11 34 34 H 1.08994 * 113.74675 * 23.55920 * 17 15 14 35 35 H 1.09008 * 113.74130 * 252.25398 * 17 15 14 36 36 H 1.09004 * 113.76762 * 90.68958 * 18 17 15 37 37 H 1.08992 * 113.77201 * 221.97699 * 18 17 15 38 38 H 1.08000 * 118.46140 * 0.38498 * 23 22 20 39 39 H 1.09004 * 109.70684 * 287.53230 * 25 24 23 40 40 H 1.09002 * 109.73947 * 166.93570 * 25 24 23 41 41 H 1.09008 * 109.70846 * 177.60341 * 26 25 24 42 42 H 1.08996 * 109.70995 * 56.98704 * 26 25 24 43 43 H 1.08993 * 109.45471 * 282.36506 * 27 22 20 44 44 H 1.09005 * 109.45173 * 42.32520 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2963 0.0006 13 7 6.0457 -4.4946 0.0010 14 6 7.4908 -4.7357 0.0005 15 6 7.7567 -6.2405 0.0754 16 1 7.2218 -6.8068 -0.6871 17 6 9.2492 -6.6022 0.1840 18 6 8.8174 -7.6465 1.2294 19 7 7.6248 -6.8024 1.4374 20 6 6.7644 -6.6181 2.4585 21 8 5.7870 -5.9077 2.3101 22 6 6.9978 -7.2517 3.7053 23 6 6.0568 -7.1795 4.6489 24 8 6.1881 -7.7454 5.8604 25 6 7.2314 -8.7437 6.0263 26 6 8.5273 -8.1910 5.4174 27 6 8.2992 -7.9753 3.9178 28 1 -0.4850 0.8400 -0.0004 29 1 3.6433 -3.4318 -0.8896 30 1 3.6439 -3.4314 0.8903 31 1 5.4290 -5.2434 0.0011 32 1 7.9414 -4.2438 0.8625 33 1 7.9257 -4.3350 -0.9151 34 1 9.8661 -5.8017 0.5922 35 1 9.6627 -7.0372 -0.7259 36 1 8.5940 -8.6257 0.8059 37 1 9.4757 -7.6983 2.0966 38 1 5.1451 -6.6447 4.4268 39 1 6.9464 -9.6620 5.5128 40 1 7.3811 -8.9469 7.0867 41 1 9.3374 -8.9048 5.5670 42 1 8.7806 -7.2424 5.8908 43 1 8.2644 -8.9408 3.4133 44 1 9.1161 -7.3809 3.5084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298982007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:50 Heat of formation + Delta-G solvation = -78.472426 kcal Electronic energy + Delta-G solvation = -27132.419387 eV Core-core repulsion = 23177.140991 eV Total energy + Delta-G solvation = -3955.278396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95591 -40.86590 -40.25638 -38.73627 -35.81736 -35.07916 -34.70340 -32.65227 -31.68480 -30.56960 -28.84215 -27.86847 -26.78494 -25.51017 -24.01033 -23.03623 -21.79352 -20.72765 -20.03429 -19.54818 -18.47871 -17.91358 -17.64298 -17.54952 -17.13034 -17.06912 -16.74322 -16.57607 -15.92438 -15.68810 -15.48895 -15.16424 -14.94146 -14.85928 -14.61500 -14.57801 -14.10888 -13.81322 -13.68141 -13.38412 -13.30417 -13.27753 -13.04765 -12.96859 -12.73042 -12.35722 -12.31961 -11.99590 -11.86702 -11.80433 -11.41523 -11.19566 -10.98101 -10.64745 -10.59236 -10.10417 -9.83802 -9.35456 -9.03428 -8.54281 -6.25849 0.37232 0.95234 1.28978 1.44078 1.52350 1.57102 1.83818 2.22471 2.25403 2.29904 2.39006 2.69198 2.83274 3.46733 3.60757 3.72811 3.77149 3.89092 3.94540 4.01634 4.06791 4.16728 4.17807 4.24850 4.33831 4.41118 4.42566 4.47917 4.55862 4.66955 4.73441 4.76832 4.89825 5.01004 5.02799 5.12913 5.17735 5.31124 5.34657 5.42833 5.67964 6.07722 6.23260 6.43487 6.78427 6.89981 7.16144 7.25578 8.58697 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002599 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.454479 B =10768.895062 C =12134.801641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.918 3.082 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.239 1.239 7 C -0.532 4.532 8 H 0.057 0.943 9 S -0.169 6.169 10 C -0.108 4.108 11 C 0.536 3.464 12 O -0.568 6.568 13 N -0.698 5.698 14 C 0.121 3.879 15 C 0.118 3.882 16 H 0.117 0.883 17 C -0.128 4.128 18 C 0.093 3.907 19 N -0.646 5.646 20 C 0.577 3.423 21 O -0.594 6.594 22 C -0.318 4.318 23 C 0.151 3.849 24 O -0.326 6.326 25 C 0.043 3.957 26 C -0.155 4.155 27 C -0.071 4.071 28 H 0.278 0.722 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.409 0.591 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.323 -27.693 6.921 38.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.163 1.163 7 C -0.679 4.679 8 H 0.076 0.924 9 S 0.058 5.942 10 C -0.259 4.259 11 C 0.322 3.678 12 O -0.448 6.448 13 N -0.350 5.350 14 C -0.003 4.003 15 C 0.015 3.985 16 H 0.135 0.865 17 C -0.166 4.166 18 C -0.027 4.027 19 N -0.382 5.382 20 C 0.373 3.627 21 O -0.477 6.477 22 C -0.323 4.323 23 C 0.083 3.917 24 O -0.237 6.237 25 C -0.030 4.030 26 C -0.192 4.192 27 C -0.108 4.108 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.246 0.754 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.174 0.826 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 26.709 -25.693 7.219 37.757 hybrid contribution -1.924 -0.436 -0.044 1.973 sum 24.786 -26.129 7.175 36.722 Atomic orbital electron populations 1.70018 1.07312 1.29138 1.49042 1.25610 0.95362 1.02370 0.92716 0.85819 0.80535 0.79265 0.80443 1.18231 1.17949 1.16344 1.22456 0.90239 0.96696 1.58540 0.92432 1.84548 1.06462 1.05676 1.97552 1.23210 0.96378 0.99768 1.06530 1.19829 0.89246 0.83460 0.75298 1.90647 1.59200 1.43743 1.51202 1.45630 1.08688 1.06541 1.74159 1.21625 0.80337 0.96377 1.01966 1.23394 0.98770 0.91669 0.84708 0.86510 1.23551 0.92303 0.99250 1.01464 1.23835 0.83856 0.95670 0.99354 1.50280 1.30219 1.44423 1.13305 1.16760 0.80926 0.80546 0.84488 1.90847 1.30193 1.42252 1.84444 1.20115 1.01444 1.14505 0.96186 1.22801 0.97015 0.89064 0.82828 1.86265 1.55220 1.53697 1.28533 1.23915 0.85552 0.89147 1.04410 1.22253 0.98395 1.03181 0.95392 1.20713 0.92669 1.00257 0.97132 0.91236 0.87147 0.88475 0.75443 0.93662 0.89477 0.88736 0.86014 0.87228 0.87150 0.82624 0.89578 0.85349 0.86314 0.91672 0.88812 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.39 13.97 21.65 0.30 -58.08 16 2 C 0.04 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.92 47.32 27.74 68.60 1.90 49.22 16 4 H -0.26 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.24 -12.45 6.74 99.48 0.67 -11.78 16 7 C -0.53 -33.32 10.04 67.95 0.68 -32.64 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.17 -9.39 18.55 -56.49 -1.05 -10.43 16 10 C -0.11 -4.87 6.16 71.23 0.44 -4.43 16 11 C 0.54 22.23 7.85 87.66 0.69 22.92 16 12 O -0.57 -27.44 15.86 -3.03 -0.05 -27.49 16 13 N -0.70 -21.77 4.31 -463.06 -1.99 -23.76 16 14 C 0.12 2.90 5.37 86.38 0.46 3.37 16 15 C 0.12 1.67 4.28 45.03 0.19 1.86 16 16 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.13 -0.71 7.86 31.25 0.25 -0.46 16 18 C 0.09 0.48 7.06 86.48 0.61 1.10 16 19 N -0.65 -10.49 3.47 -820.93 -2.85 -13.34 16 20 C 0.58 14.03 7.61 85.12 0.65 14.68 16 21 O -0.59 -20.14 14.36 -4.48 -0.06 -20.21 16 22 C -0.32 -6.05 5.70 -20.16 -0.11 -6.16 16 23 C 0.15 3.25 10.46 66.74 0.70 3.94 16 24 O -0.33 -5.95 10.47 -76.26 -0.80 -6.75 16 25 C 0.04 0.37 7.15 72.14 0.52 0.88 16 26 C -0.15 -1.04 6.23 30.83 0.19 -0.85 16 27 C -0.07 -0.65 4.02 29.83 0.12 -0.53 16 28 H 0.28 16.26 8.31 -92.71 -0.77 15.49 16 29 H 0.11 4.56 8.14 -2.39 -0.02 4.54 16 30 H 0.10 4.40 8.14 -2.39 -0.02 4.38 16 31 H 0.41 11.75 7.70 -92.71 -0.71 11.04 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 35 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.11 0.24 4.95 -2.39 -0.01 0.23 16 38 H 0.16 3.96 7.23 -2.91 -0.02 3.94 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.48 7.70 -2.39 -0.02 0.46 16 44 H 0.09 0.72 5.58 -2.38 -0.01 0.70 16 Total: -1.00 -89.34 372.14 1.53 -87.81 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.28 Total: 16.13 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.85 Total: 6.91 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -4.54 Total: -95.18 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.91 Total: -54.44 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.90 Total: 49.22 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -1.05 Total: -10.43 kcal Total: -89.34 1.53 -87.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -89.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds