Wall clock time and date at job start Tue Mar 31 2020 23:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48504 * 109.46942 * 269.99780 * 3 2 1 5 5 H 1.48501 * 109.46741 * 29.99786 * 3 2 1 6 6 H 1.48497 * 109.47163 * 149.99621 * 3 2 1 7 7 C 1.38796 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.80993 * 99.99786 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47054 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99893 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00129 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46866 * 184.96198 * 14 13 11 16 16 H 1.08992 * 112.78278 * 45.49176 * 15 14 13 17 17 C 1.53496 * 113.46910 * 274.70661 * 15 14 13 18 18 C 1.53761 * 83.25795 * 218.98793 * 17 15 14 19 19 N 1.47063 * 87.88956 * 26.23658 * 18 17 15 20 20 C 1.34774 * 136.05845 * 152.95839 * 19 18 17 21 21 O 1.21614 * 120.00097 * 174.87108 * 20 19 18 22 22 C 1.47100 * 120.00054 * 354.88072 * 20 19 18 23 23 C 1.32085 * 118.88110 * 180.02562 * 22 20 19 24 24 C 1.50272 * 122.57975 * 180.34266 * 23 22 20 25 25 O 1.42889 * 110.09359 * 344.37905 * 24 23 22 26 26 C 1.43279 * 113.10972 * 50.50951 * 25 24 23 27 27 C 1.50419 * 118.87481 * 359.97438 * 22 20 19 28 28 H 0.97007 * 120.00215 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47428 * 60.00236 * 10 9 7 30 30 H 1.09004 * 109.47357 * 299.99734 * 10 9 7 31 31 H 0.97002 * 119.99835 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.46901 * 64.96517 * 14 13 11 33 33 H 1.08997 * 109.47102 * 304.96428 * 14 13 11 34 34 H 1.09003 * 114.20773 * 332.73779 * 17 15 14 35 35 H 1.09000 * 114.21034 * 105.56867 * 17 15 14 36 36 H 1.09004 * 113.46115 * 271.50519 * 18 17 15 37 37 H 1.09001 * 113.55120 * 140.99026 * 18 17 15 38 38 H 1.07999 * 118.70858 * 0.36702 * 23 22 20 39 39 H 1.09001 * 109.36233 * 104.56905 * 24 23 22 40 40 H 1.09000 * 109.36391 * 224.18540 * 24 23 22 41 41 H 1.09000 * 109.62786 * 171.47986 * 26 25 24 42 42 H 1.08998 * 109.65570 * 50.85984 * 26 25 24 43 43 H 1.08994 * 109.46190 * 283.37831 * 27 22 20 44 44 H 1.09005 * 109.45625 * 43.31945 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5731 -3.2323 0.0039 12 8 6.3440 -2.2961 0.0035 13 7 6.0458 -4.4945 0.0045 14 6 7.4908 -4.7355 0.0053 15 6 7.7574 -6.2370 -0.1189 16 1 7.1480 -6.7117 -0.8877 17 6 7.7296 -6.9761 1.2261 18 6 8.9092 -7.7524 0.6179 19 7 9.1863 -6.5721 -0.2144 20 6 10.2711 -6.0365 -0.8084 21 8 10.1517 -5.0647 -1.5298 22 6 11.5994 -6.6273 -0.5841 23 6 12.6475 -6.0842 -1.1768 24 6 14.0402 -6.6241 -1.0120 25 8 14.0933 -7.5121 0.1061 26 6 13.0680 -8.5125 0.0790 27 6 11.7179 -7.8287 0.3132 28 1 -0.4851 0.8401 -0.0004 29 1 3.6441 -3.4320 -0.8873 30 1 3.6434 -3.4309 0.8927 31 1 5.4292 -5.2433 0.0045 32 1 7.9203 -4.3661 0.9365 33 1 7.9465 -4.2147 -0.8368 34 1 7.9929 -6.3555 2.0827 35 1 6.8357 -7.5789 1.3865 36 1 8.6033 -8.6267 0.0433 37 1 9.7005 -7.9739 1.3342 38 1 12.4977 -5.2179 -1.8041 39 1 14.3283 -7.1622 -1.9151 40 1 14.7315 -5.7971 -0.8501 41 1 13.2494 -9.2442 0.8663 42 1 13.0646 -9.0079 -0.8919 43 1 11.6463 -7.5131 1.3540 44 1 10.9130 -8.5292 0.0903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298984087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:04 Heat of formation + Delta-G solvation = -53.976905 kcal Electronic energy + Delta-G solvation = -26308.449349 eV Core-core repulsion = 22354.233158 eV Total energy + Delta-G solvation = -3954.216191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28389 -39.81758 -39.05027 -38.13316 -34.68934 -34.13616 -32.42719 -31.80515 -30.53023 -29.96297 -27.83351 -26.52373 -25.60286 -24.65522 -23.32800 -22.80535 -20.68014 -20.02135 -18.77742 -17.91579 -17.80797 -16.99644 -16.71776 -16.54055 -16.16875 -15.70095 -15.38122 -15.29019 -15.08893 -14.90943 -14.45259 -14.20768 -13.97118 -13.79926 -13.49138 -13.24979 -13.21999 -13.04262 -12.93441 -12.78108 -12.49812 -12.20469 -11.92316 -11.80618 -11.36343 -11.25507 -11.00774 -10.97767 -10.59636 -10.52824 -9.96202 -9.84181 -9.66142 -9.52055 -9.15622 -9.00934 -8.95261 -8.48096 -6.90336 -6.27874 -3.99426 0.86269 2.20876 2.78802 2.85495 3.00057 3.26633 3.34265 3.38727 3.52777 3.69468 3.76195 3.90499 4.12418 4.26911 4.34767 4.39345 4.46063 4.59369 4.60815 4.67454 4.74962 4.77840 4.83164 4.87469 4.90961 5.00586 5.07667 5.11299 5.25346 5.27313 5.30723 5.32894 5.51583 5.69981 5.78566 5.79225 5.92540 6.00130 6.02132 6.48235 6.49597 7.27061 7.59298 7.77260 7.95146 8.42313 8.50894 9.18513 10.81231 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001867 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.424349 B =14991.803653 C =15716.782613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.734 5.734 14 C 0.116 3.884 15 C 0.124 3.876 16 H 0.101 0.899 17 C -0.152 4.152 18 C 0.091 3.909 19 N -0.637 5.637 20 C 0.578 3.422 21 O -0.529 6.529 22 C -0.163 4.163 23 C -0.112 4.112 24 C 0.085 3.915 25 O -0.377 6.377 26 C 0.058 3.942 27 C -0.121 4.121 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.021 -25.063 1.631 35.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.273 4.273 11 C 0.316 3.684 12 O -0.389 6.389 13 N -0.389 5.389 14 C -0.009 4.009 15 C 0.020 3.980 16 H 0.119 0.881 17 C -0.190 4.190 18 C -0.031 4.031 19 N -0.373 5.373 20 C 0.370 3.630 21 O -0.406 6.406 22 C -0.166 4.166 23 C -0.131 4.131 24 C 0.008 3.992 25 O -0.295 6.295 26 C -0.019 4.019 27 C -0.158 4.158 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.428 -22.749 1.283 34.894 hybrid contribution -1.433 -0.719 -0.366 1.644 sum 24.995 -23.468 0.916 34.298 Atomic orbital electron populations 1.69939 1.05897 1.27750 1.48120 1.24709 0.94455 0.98966 0.93175 0.86738 0.81904 0.83270 0.79969 1.19198 1.19940 1.15916 1.22317 0.88274 0.97532 1.58747 0.89370 1.84844 1.09237 1.00060 1.97419 1.23266 0.93814 1.04418 1.05822 1.20290 0.90616 0.82162 0.75323 1.90723 1.58771 1.42137 1.47314 1.45781 1.06880 1.08193 1.78091 1.21418 0.81951 0.93861 1.03636 1.22891 0.81803 0.95993 0.97264 0.88119 1.23668 0.99225 0.99231 0.96867 1.23302 0.97423 0.89673 0.92728 1.49509 1.07326 1.27692 1.52822 1.18014 0.83302 0.83219 0.78447 1.90858 1.85771 1.27097 1.36909 1.20729 0.92696 1.00126 1.03021 1.23773 0.94505 0.98562 0.96296 1.21621 0.93663 0.93773 0.90094 1.88153 1.52147 1.43804 1.45406 1.22713 0.86438 0.90387 1.02342 1.21371 0.99284 0.95481 0.99698 0.91956 0.88460 0.88390 0.76743 0.91307 0.89774 0.88058 0.88547 0.89261 0.89281 0.84458 0.90683 0.86732 0.87946 0.92448 0.89317 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.10 27.74 -169.99 -4.72 17.38 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 12 O -0.52 -11.82 15.86 5.56 0.09 -11.74 16 13 N -0.73 -9.48 5.55 -60.29 -0.33 -9.82 16 14 C 0.12 1.47 5.46 -4.04 -0.02 1.45 16 15 C 0.12 1.03 4.06 -72.39 -0.29 0.73 16 16 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 17 C -0.15 -0.74 8.03 -26.08 -0.21 -0.95 16 18 C 0.09 0.39 6.36 -8.37 -0.05 0.34 16 19 N -0.64 -5.60 3.55 -178.67 -0.63 -6.24 16 20 C 0.58 6.71 7.86 -12.67 -0.10 6.61 16 21 O -0.53 -8.45 15.66 5.27 0.08 -8.37 16 22 C -0.16 -1.41 5.86 -103.09 -0.60 -2.02 16 23 C -0.11 -0.91 9.58 -36.44 -0.35 -1.26 16 24 C 0.08 0.50 7.04 35.80 0.25 0.75 16 25 O -0.38 -2.76 10.83 -35.23 -0.38 -3.15 16 26 C 0.06 0.28 6.88 37.23 0.26 0.54 16 27 C -0.12 -0.65 4.36 -27.95 -0.12 -0.77 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 31 H 0.40 3.64 8.48 -40.82 -0.35 3.29 16 32 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 33 H 0.08 1.39 7.16 -51.93 -0.37 1.02 16 34 H 0.10 0.57 7.96 -51.93 -0.41 0.16 16 35 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 0.26 5.70 -51.93 -0.30 -0.04 16 38 H 0.14 1.25 7.29 -52.49 -0.38 0.87 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 43 H 0.09 0.47 7.57 -51.93 -0.39 0.07 16 44 H 0.09 0.33 5.76 -51.93 -0.30 0.03 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -39.17 375.08 -8.65 -47.82 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.29 Total: -0.79 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.89 Total: 0.82 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.19 Total: -41.97 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.21 Total: -23.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.72 Total: 17.38 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.17 -8.65 -47.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298984087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -39.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds