Wall clock time and date at job start Tue Mar 31 2020 23:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99815 * 2 1 4 4 H 1.48504 * 109.46942 * 269.99780 * 3 2 1 5 5 H 1.48501 * 109.46741 * 29.99786 * 3 2 1 6 6 H 1.48497 * 109.47163 * 149.99621 * 3 2 1 7 7 C 1.38796 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00016 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.80993 * 99.99786 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47054 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99893 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00283 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00129 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46866 * 184.96198 * 14 13 11 16 16 H 1.08992 * 112.78278 * 45.49176 * 15 14 13 17 17 C 1.53496 * 113.46910 * 274.70661 * 15 14 13 18 18 C 1.53761 * 83.25795 * 218.98793 * 17 15 14 19 19 N 1.47063 * 87.88956 * 26.23658 * 18 17 15 20 20 C 1.34774 * 136.05845 * 152.95839 * 19 18 17 21 21 O 1.21614 * 120.00097 * 174.87108 * 20 19 18 22 22 C 1.47100 * 120.00054 * 354.88072 * 20 19 18 23 23 C 1.32085 * 118.88110 * 180.02562 * 22 20 19 24 24 C 1.50272 * 122.57975 * 180.34266 * 23 22 20 25 25 O 1.42889 * 110.09359 * 344.37905 * 24 23 22 26 26 C 1.43279 * 113.10972 * 50.50951 * 25 24 23 27 27 C 1.50419 * 118.87481 * 359.97438 * 22 20 19 28 28 H 0.97007 * 120.00215 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47428 * 60.00236 * 10 9 7 30 30 H 1.09004 * 109.47357 * 299.99734 * 10 9 7 31 31 H 0.97002 * 119.99835 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.46901 * 64.96517 * 14 13 11 33 33 H 1.08997 * 109.47102 * 304.96428 * 14 13 11 34 34 H 1.09003 * 114.20773 * 332.73779 * 17 15 14 35 35 H 1.09000 * 114.21034 * 105.56867 * 17 15 14 36 36 H 1.09004 * 113.46115 * 271.50519 * 18 17 15 37 37 H 1.09001 * 113.55120 * 140.99026 * 18 17 15 38 38 H 1.07999 * 118.70858 * 0.36702 * 23 22 20 39 39 H 1.09001 * 109.36233 * 104.56905 * 24 23 22 40 40 H 1.09000 * 109.36391 * 224.18540 * 24 23 22 41 41 H 1.09000 * 109.62786 * 171.47986 * 26 25 24 42 42 H 1.08998 * 109.65570 * 50.85984 * 26 25 24 43 43 H 1.08994 * 109.46190 * 283.37831 * 27 22 20 44 44 H 1.09005 * 109.45625 * 43.31945 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5731 -3.2323 0.0039 12 8 6.3440 -2.2961 0.0035 13 7 6.0458 -4.4945 0.0045 14 6 7.4908 -4.7355 0.0053 15 6 7.7574 -6.2370 -0.1189 16 1 7.1480 -6.7117 -0.8877 17 6 7.7296 -6.9761 1.2261 18 6 8.9092 -7.7524 0.6179 19 7 9.1863 -6.5721 -0.2144 20 6 10.2711 -6.0365 -0.8084 21 8 10.1517 -5.0647 -1.5298 22 6 11.5994 -6.6273 -0.5841 23 6 12.6475 -6.0842 -1.1768 24 6 14.0402 -6.6241 -1.0120 25 8 14.0933 -7.5121 0.1061 26 6 13.0680 -8.5125 0.0790 27 6 11.7179 -7.8287 0.3132 28 1 -0.4851 0.8401 -0.0004 29 1 3.6441 -3.4320 -0.8873 30 1 3.6434 -3.4309 0.8927 31 1 5.4292 -5.2433 0.0045 32 1 7.9203 -4.3661 0.9365 33 1 7.9465 -4.2147 -0.8368 34 1 7.9929 -6.3555 2.0827 35 1 6.8357 -7.5789 1.3865 36 1 8.6033 -8.6267 0.0433 37 1 9.7005 -7.9739 1.3342 38 1 12.4977 -5.2179 -1.8041 39 1 14.3283 -7.1622 -1.9151 40 1 14.7315 -5.7971 -0.8501 41 1 13.2494 -9.2442 0.8663 42 1 13.0646 -9.0079 -0.8919 43 1 11.6463 -7.5131 1.3540 44 1 10.9130 -8.5292 0.0903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298984087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:03 Heat of formation + Delta-G solvation = -84.934686 kcal Electronic energy + Delta-G solvation = -26309.791779 eV Core-core repulsion = 22354.233158 eV Total energy + Delta-G solvation = -3955.558621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96439 -40.71037 -40.09780 -38.94666 -35.88923 -34.83695 -34.68049 -32.30986 -31.71322 -30.80056 -28.87964 -27.83774 -27.04479 -25.22016 -23.93319 -23.42910 -22.01760 -20.73616 -19.96438 -19.30662 -18.41310 -18.02684 -17.76192 -17.41818 -17.11985 -17.01411 -16.73580 -16.21469 -16.15916 -15.89128 -15.56850 -15.22132 -14.96560 -14.91425 -14.69898 -14.62136 -14.12873 -13.74690 -13.70707 -13.57827 -13.44000 -13.36260 -13.05553 -12.96903 -12.69222 -12.63332 -12.43388 -11.89193 -11.81369 -11.56129 -11.20931 -11.18675 -11.10727 -10.55660 -10.54239 -10.28585 -10.25927 -9.78794 -9.02032 -8.52768 -6.23656 0.18899 0.95076 1.29573 1.41187 1.48810 1.50011 1.65105 2.05791 2.22671 2.28798 2.71121 2.85455 2.88377 3.22484 3.40546 3.64466 3.66586 3.81435 3.84372 3.93339 3.97022 4.16692 4.22235 4.27902 4.34614 4.43775 4.44543 4.46056 4.49469 4.62259 4.63477 4.69396 4.77044 4.88411 4.93847 4.99395 5.20513 5.22540 5.30129 5.45874 5.70039 6.08366 6.10592 6.40045 6.59286 6.92817 6.96998 7.14337 8.59310 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.001867 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.424349 B =14991.803653 C =15716.782613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.067 0.933 9 S -0.185 6.185 10 C -0.106 4.106 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.702 5.702 14 C 0.122 3.878 15 C 0.117 3.883 16 H 0.121 0.879 17 C -0.136 4.136 18 C 0.094 3.906 19 N -0.642 5.642 20 C 0.564 3.436 21 O -0.593 6.593 22 C -0.174 4.174 23 C -0.117 4.117 24 C 0.088 3.912 25 O -0.396 6.396 26 C 0.054 3.946 27 C -0.115 4.115 28 H 0.277 0.723 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.422 0.578 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.804 -28.385 2.730 38.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.164 1.164 7 C -0.673 4.673 8 H 0.085 0.915 9 S 0.041 5.959 10 C -0.257 4.257 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.358 5.358 14 C -0.003 4.003 15 C 0.013 3.987 16 H 0.139 0.861 17 C -0.174 4.174 18 C -0.026 4.026 19 N -0.376 5.376 20 C 0.357 3.643 21 O -0.475 6.475 22 C -0.177 4.177 23 C -0.137 4.137 24 C 0.012 3.988 25 O -0.315 6.315 26 C -0.023 4.023 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 27.175 -26.181 2.419 37.813 hybrid contribution -1.677 0.167 -0.719 1.832 sum 25.499 -26.015 1.700 36.467 Atomic orbital electron populations 1.70005 1.07120 1.28976 1.49118 1.25509 0.95261 1.02069 0.92987 0.85911 0.80662 0.79955 0.80104 1.18936 1.18133 1.16389 1.22432 0.89905 0.96817 1.58175 0.91513 1.84868 1.06848 1.06541 1.97612 1.23237 0.95006 0.99479 1.07965 1.20128 0.89745 0.83219 0.75096 1.90714 1.59647 1.44136 1.50173 1.45431 1.07691 1.07122 1.75529 1.21362 0.80759 0.97076 1.01077 1.23160 0.82179 0.92797 1.00527 0.86106 1.23663 1.00960 0.98555 0.94192 1.23659 0.97613 0.88887 0.92490 1.49748 1.06815 1.28987 1.52039 1.18628 0.85003 0.82738 0.77908 1.90819 1.86839 1.29938 1.39922 1.20927 0.91170 1.01508 1.04058 1.23922 0.96024 0.97928 0.95798 1.21709 0.92132 0.94241 0.90705 1.88127 1.53061 1.44390 1.45895 1.22938 0.85416 0.90131 1.03770 1.21435 1.00568 0.94304 0.98849 0.91350 0.86495 0.85960 0.73935 0.92564 0.94217 0.88872 0.85090 0.86149 0.87380 0.86627 0.88795 0.85765 0.85723 0.91540 0.88967 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.75 13.97 21.65 0.30 -55.45 16 2 C 0.05 2.80 5.50 84.86 0.47 3.27 16 3 Si 0.91 45.87 27.74 68.60 1.90 47.77 16 4 H -0.26 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -12.17 6.74 99.48 0.67 -11.50 16 7 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 8 H 0.07 4.06 8.03 -2.91 -0.02 4.04 16 9 S -0.19 -9.59 18.55 -56.49 -1.05 -10.64 16 10 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 11 C 0.53 19.28 7.85 87.66 0.69 19.97 16 12 O -0.57 -26.68 15.86 -3.04 -0.05 -26.73 16 13 N -0.70 -17.12 5.55 -463.06 -2.57 -19.69 16 14 C 0.12 3.10 5.46 86.38 0.47 3.57 16 15 C 0.12 1.68 4.06 41.79 0.17 1.85 16 16 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.14 -0.78 8.03 31.02 0.25 -0.53 16 18 C 0.09 0.41 6.36 83.27 0.53 0.94 16 19 N -0.64 -10.33 3.55 -837.43 -2.97 -13.30 16 20 C 0.56 13.42 7.86 86.57 0.68 14.10 16 21 O -0.59 -20.58 15.66 -4.07 -0.06 -20.64 16 22 C -0.17 -2.96 5.86 -18.58 -0.11 -3.07 16 23 C -0.12 -1.97 9.58 24.59 0.24 -1.74 16 24 C 0.09 0.97 7.04 71.10 0.50 1.47 16 25 O -0.40 -5.11 10.83 -148.98 -1.61 -6.72 16 26 C 0.05 0.37 6.88 72.03 0.50 0.87 16 27 C -0.11 -0.94 4.36 29.80 0.13 -0.81 16 28 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 29 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 30 H 0.12 4.05 8.14 -2.39 -0.02 4.04 16 31 H 0.42 6.34 8.48 -92.71 -0.79 5.56 16 32 H 0.06 1.57 7.90 -2.39 -0.02 1.55 16 33 H 0.04 1.40 7.16 -2.39 -0.02 1.38 16 34 H 0.09 0.76 7.96 -2.39 -0.02 0.74 16 35 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.11 0.13 5.70 -2.39 -0.01 0.12 16 38 H 0.12 2.41 7.29 -2.91 -0.02 2.39 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.07 0.35 8.09 -2.39 -0.02 0.33 16 43 H 0.09 0.70 7.57 -2.39 -0.02 0.69 16 44 H 0.11 0.37 5.76 -2.38 -0.01 0.36 16 Total: -1.00 -90.99 375.08 -0.28 -91.27 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.21 Total: 7.86 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.63 Total: 6.27 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -5.24 Total: -88.44 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -1.73 Total: -54.09 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.05 Total: -10.64 kcal Total: -90.99 -0.28 -91.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298984087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.331 kcal (2) G-P(sol) polarization free energy of solvation -90.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds