Wall clock time and date at job start Tue Mar 31 2020 23:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48498 * 109.47467 * 269.99662 * 3 2 1 5 5 H 1.48494 * 109.47302 * 30.00264 * 3 2 1 6 6 H 1.48506 * 109.46737 * 149.99697 * 3 2 1 7 7 C 1.39935 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99985 * 196.78657 * 7 2 1 9 9 C 1.41408 * 119.99809 * 16.78825 * 7 2 1 10 10 C 1.40778 * 120.20971 * 25.16959 * 9 7 2 11 11 C 1.37649 * 119.88286 * 179.97438 * 10 9 7 12 12 C 1.38527 * 120.32211 * 0.02800 * 11 10 9 13 13 C 1.39252 * 120.42898 * 359.94917 * 12 11 10 14 14 N 1.39950 * 119.94679 * 180.02562 * 13 12 11 15 15 C 1.34767 * 120.00106 * 145.78268 * 14 13 12 16 16 O 1.21587 * 120.00410 * 354.83193 * 15 14 13 17 17 N 1.34781 * 120.00277 * 174.83106 * 15 14 13 18 18 N 1.40103 * 119.99694 * 0.02562 * 17 15 14 19 19 C 1.34780 * 119.99947 * 179.97438 * 18 17 15 20 20 O 1.21276 * 119.99958 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00015 * 179.97438 * 19 18 17 22 22 C 1.50696 * 109.47270 * 180.02562 * 21 19 18 23 23 C 1.38650 * 120.78904 * 269.72249 * 22 21 19 24 24 C 1.38202 * 119.16166 * 179.79782 * 23 22 21 25 25 N 1.31872 * 120.76280 * 0.48555 * 24 23 22 26 26 C 1.31865 * 121.72924 * 359.74327 * 25 24 23 27 27 C 1.38209 * 120.76164 * 0.02562 * 26 25 24 28 28 C 1.38274 * 120.10303 * 0.28212 * 13 12 11 29 29 H 0.97008 * 120.00048 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.06093 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.83410 * 180.02562 * 11 10 9 32 32 H 1.07998 * 119.78858 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99832 * 325.77850 * 14 13 12 34 34 H 0.96993 * 120.00710 * 179.97438 * 17 15 14 35 35 H 0.96997 * 120.00320 * 359.97438 * 18 17 15 36 36 H 1.09008 * 109.46778 * 60.00056 * 21 19 18 37 37 H 1.08999 * 109.47190 * 300.00508 * 21 19 18 38 38 H 1.08001 * 120.42136 * 0.02562 * 23 22 21 39 39 H 1.08003 * 119.62278 * 180.20802 * 24 23 22 40 40 H 1.07997 * 119.62086 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.41842 * 179.97438 * 27 26 25 42 42 H 1.08001 * 120.15420 * 179.74756 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2316 0.2707 9 6 1.3461 -2.4105 -0.3526 10 6 0.2107 -2.3743 -1.1842 11 6 -0.4280 -3.5452 -1.5242 12 6 0.0405 -4.7602 -1.0516 13 6 1.1627 -4.8114 -0.2286 14 7 1.6276 -6.0444 0.2427 15 6 2.9493 -6.2461 0.4122 16 8 3.7437 -5.3925 0.0678 17 7 3.3906 -7.3941 0.9635 18 7 2.4754 -8.3780 1.3599 19 6 2.9167 -9.5262 1.9108 20 8 4.1060 -9.7075 2.0637 21 6 1.9322 -10.5842 2.3377 22 6 2.6771 -11.7584 2.9187 23 6 3.0860 -12.8091 2.1118 24 6 3.7705 -13.8671 2.6793 25 7 4.0269 -13.8886 3.9727 26 6 3.6492 -12.9092 4.7708 27 6 2.9646 -11.8163 4.2738 28 6 1.8151 -3.6456 0.1279 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1580 -1.4295 -1.5554 31 1 -1.2987 -3.5165 -2.1626 32 1 -0.4675 -5.6736 -1.3234 33 1 0.9985 -6.7538 0.4475 34 1 4.3419 -7.5394 1.0852 35 1 1.5241 -8.2329 1.2380 36 1 1.3536 -10.9119 1.4739 37 1 1.2598 -10.1724 3.0903 38 1 2.8754 -12.7993 1.0526 39 1 4.0955 -14.6879 2.0571 40 1 3.8768 -12.9621 5.8252 41 1 2.6576 -11.0175 4.9326 42 1 2.6830 -3.6840 0.7695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310750850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:15 Heat of formation + Delta-G solvation = 35.951612 kcal Electronic energy + Delta-G solvation = -27139.585194 eV Core-core repulsion = 23086.117396 eV Total energy + Delta-G solvation = -4053.467798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98382 -40.36393 -39.38734 -37.40823 -35.84445 -34.58562 -34.32594 -33.05027 -31.55780 -31.44819 -29.87994 -28.68329 -27.91198 -25.35384 -23.84078 -23.22222 -22.45368 -21.42044 -20.94476 -20.19755 -18.94915 -18.15761 -17.48871 -16.99756 -16.91671 -16.22797 -15.97727 -15.81621 -15.45211 -15.13992 -14.88142 -14.71896 -14.57033 -14.31537 -14.02943 -13.88194 -13.22289 -13.19161 -12.96299 -12.88874 -12.27021 -11.89821 -11.76274 -11.57128 -11.21255 -11.16729 -11.02259 -10.72327 -10.49883 -10.39215 -9.98076 -9.85810 -9.81732 -9.65443 -9.48926 -9.20925 -9.13036 -8.52457 -7.50968 -7.00555 -6.75930 -4.38109 0.77665 0.80067 1.69697 2.06229 2.65580 2.83095 3.07935 3.11946 3.14693 3.18435 3.45020 3.48196 3.92959 3.94166 4.10976 4.14945 4.25752 4.60264 4.64841 4.73512 4.82648 4.87542 4.88553 5.25752 5.41042 5.56160 5.64700 5.86991 6.10006 6.18923 6.30754 6.33872 6.36604 6.57783 6.97375 7.00723 7.07442 7.11740 7.22024 7.46395 7.62210 7.62956 7.79586 7.92751 8.05282 8.14973 8.29590 8.59125 8.68425 8.89609 8.93186 10.17467 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.001829 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.734963 B =15306.734319 C =15764.827754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.091 4.091 12 C -0.262 4.262 13 C 0.163 3.837 14 N -0.676 5.676 15 C 0.707 3.293 16 O -0.543 6.543 17 N -0.537 5.537 18 N -0.526 5.526 19 C 0.516 3.484 20 O -0.526 6.526 21 C -0.096 4.096 22 C -0.024 4.024 23 C -0.157 4.157 24 C 0.099 3.901 25 N -0.486 5.486 26 C 0.099 3.901 27 C -0.156 4.156 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.388 0.612 34 H 0.440 0.560 35 H 0.421 0.579 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.135 0.865 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -21.555 5.486 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.110 4.110 12 C -0.284 4.284 13 C 0.071 3.929 14 N -0.325 5.325 15 C 0.407 3.593 16 O -0.413 6.413 17 N -0.296 5.296 18 N -0.278 5.278 19 C 0.301 3.699 20 O -0.400 6.400 21 C -0.137 4.137 22 C -0.033 4.033 23 C -0.177 4.177 24 C -0.058 4.058 25 N -0.195 5.195 26 C -0.057 4.057 27 C -0.176 4.176 28 C -0.232 4.232 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.222 0.778 34 H 0.286 0.714 35 H 0.262 0.738 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.208 -21.510 5.688 22.251 hybrid contribution -0.632 1.124 -0.252 1.314 sum -0.840 -20.386 5.436 21.115 Atomic orbital electron populations 1.69821 1.07537 1.29194 1.35414 1.25911 0.94759 1.01336 0.92203 0.86288 0.80531 0.80420 0.79369 1.19232 1.20342 1.18564 1.19610 0.97845 0.90899 1.40247 0.90259 1.17492 0.90887 0.91598 0.88310 1.21364 0.99287 0.96919 1.01405 1.20449 0.98549 0.92616 0.99403 1.19972 1.02491 0.96949 1.08937 1.17213 0.96244 0.82182 0.97229 1.42572 1.04794 1.16017 1.69073 1.15794 0.83713 0.80795 0.79018 1.91103 1.54204 1.40933 1.55037 1.44827 1.06118 1.11218 1.67484 1.44892 1.06203 1.13021 1.63675 1.20601 0.90392 0.81172 0.77730 1.90792 1.16709 1.78290 1.54213 1.20612 0.97176 0.92145 1.03746 1.19572 0.96044 0.93950 0.93728 1.22020 0.99763 0.94913 1.00982 1.22745 0.94400 0.97316 0.91307 1.67664 1.18686 1.27783 1.05395 1.22750 0.93751 0.89281 0.99949 1.22034 1.00200 0.99944 0.95450 1.20993 1.04357 0.90907 1.06924 0.90889 0.86254 0.88934 0.89308 0.77779 0.71369 0.73808 0.86646 0.86600 0.84746 0.82665 0.82642 0.84704 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 10.94 55.55 0.61 -19.65 16 2 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.33 9.05 -37.74 -0.34 -12.67 16 8 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 9 C 0.12 3.23 5.57 -106.85 -0.59 2.64 16 10 C -0.17 -4.33 8.69 -38.84 -0.34 -4.67 16 11 C -0.09 -2.04 10.02 -39.69 -0.40 -2.43 16 12 C -0.26 -5.42 9.97 -39.10 -0.39 -5.81 16 13 C 0.16 3.50 6.25 -83.76 -0.52 2.98 16 14 N -0.68 -11.06 5.29 -14.27 -0.08 -11.13 16 15 C 0.71 12.26 8.40 -86.92 -0.73 11.53 16 16 O -0.54 -12.10 14.93 5.29 0.08 -12.02 16 17 N -0.54 -7.10 6.26 27.63 0.17 -6.92 16 18 N -0.53 -4.70 6.25 31.22 0.20 -4.51 16 19 C 0.52 4.63 7.94 -10.98 -0.09 4.54 16 20 O -0.53 -7.01 15.87 5.56 0.09 -6.92 16 21 C -0.10 -0.47 5.88 -29.04 -0.17 -0.64 16 22 C -0.02 -0.18 4.41 -104.32 -0.46 -0.64 16 23 C -0.16 -1.15 9.82 -39.44 -0.39 -1.54 16 24 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 25 N -0.49 -4.80 10.36 -13.25 -0.14 -4.93 16 26 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 27 C -0.16 -1.17 9.82 -39.44 -0.39 -1.56 16 28 C -0.21 -5.30 8.39 -38.69 -0.32 -5.62 16 29 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 30 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.39 4.49 6.76 -40.82 -0.28 4.21 16 34 H 0.44 6.01 8.10 -182.60 -1.48 4.53 16 35 H 0.42 2.47 6.72 -182.60 -1.23 1.25 16 36 H 0.12 0.25 8.10 -51.92 -0.42 -0.17 16 37 H 0.12 0.28 8.10 -51.93 -0.42 -0.14 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.16 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.11 2.80 6.48 -52.49 -0.34 2.46 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -35.27 367.52 -10.75 -46.02 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.57 Total: 11.52 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -5.61 Total: -10.83 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.76 Total: -47.15 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.17 Total: -18.94 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.27 -10.75 -46.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310750850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.974 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds