Wall clock time and date at job start Tue Mar 31 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48498 * 109.47467 * 269.99662 * 3 2 1 5 5 H 1.48494 * 109.47302 * 30.00264 * 3 2 1 6 6 H 1.48506 * 109.46737 * 149.99697 * 3 2 1 7 7 C 1.39935 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99985 * 196.78657 * 7 2 1 9 9 C 1.41408 * 119.99809 * 16.78825 * 7 2 1 10 10 C 1.40778 * 120.20971 * 25.16959 * 9 7 2 11 11 C 1.37649 * 119.88286 * 179.97438 * 10 9 7 12 12 C 1.38527 * 120.32211 * 0.02800 * 11 10 9 13 13 C 1.39252 * 120.42898 * 359.94917 * 12 11 10 14 14 N 1.39950 * 119.94679 * 180.02562 * 13 12 11 15 15 C 1.34767 * 120.00106 * 145.78268 * 14 13 12 16 16 O 1.21587 * 120.00410 * 354.83193 * 15 14 13 17 17 N 1.34781 * 120.00277 * 174.83106 * 15 14 13 18 18 N 1.40103 * 119.99694 * 0.02562 * 17 15 14 19 19 C 1.34780 * 119.99947 * 179.97438 * 18 17 15 20 20 O 1.21276 * 119.99958 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00015 * 179.97438 * 19 18 17 22 22 C 1.50696 * 109.47270 * 180.02562 * 21 19 18 23 23 C 1.38650 * 120.78904 * 269.72249 * 22 21 19 24 24 C 1.38202 * 119.16166 * 179.79782 * 23 22 21 25 25 N 1.31872 * 120.76280 * 0.48555 * 24 23 22 26 26 C 1.31865 * 121.72924 * 359.74327 * 25 24 23 27 27 C 1.38209 * 120.76164 * 0.02562 * 26 25 24 28 28 C 1.38274 * 120.10303 * 0.28212 * 13 12 11 29 29 H 0.97008 * 120.00048 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.06093 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.83410 * 180.02562 * 11 10 9 32 32 H 1.07998 * 119.78858 * 179.97438 * 12 11 10 33 33 H 0.97003 * 119.99832 * 325.77850 * 14 13 12 34 34 H 0.96993 * 120.00710 * 179.97438 * 17 15 14 35 35 H 0.96997 * 120.00320 * 359.97438 * 18 17 15 36 36 H 1.09008 * 109.46778 * 60.00056 * 21 19 18 37 37 H 1.08999 * 109.47190 * 300.00508 * 21 19 18 38 38 H 1.08001 * 120.42136 * 0.02562 * 23 22 21 39 39 H 1.08003 * 119.62278 * 180.20802 * 24 23 22 40 40 H 1.07997 * 119.62086 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.41842 * 179.97438 * 27 26 25 42 42 H 1.08001 * 120.15420 * 179.74756 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2316 0.2707 9 6 1.3461 -2.4105 -0.3526 10 6 0.2107 -2.3743 -1.1842 11 6 -0.4280 -3.5452 -1.5242 12 6 0.0405 -4.7602 -1.0516 13 6 1.1627 -4.8114 -0.2286 14 7 1.6276 -6.0444 0.2427 15 6 2.9493 -6.2461 0.4122 16 8 3.7437 -5.3925 0.0678 17 7 3.3906 -7.3941 0.9635 18 7 2.4754 -8.3780 1.3599 19 6 2.9167 -9.5262 1.9108 20 8 4.1060 -9.7075 2.0637 21 6 1.9322 -10.5842 2.3377 22 6 2.6771 -11.7584 2.9187 23 6 3.0860 -12.8091 2.1118 24 6 3.7705 -13.8671 2.6793 25 7 4.0269 -13.8886 3.9727 26 6 3.6492 -12.9092 4.7708 27 6 2.9646 -11.8163 4.2738 28 6 1.8151 -3.6456 0.1279 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1580 -1.4295 -1.5554 31 1 -1.2987 -3.5165 -2.1626 32 1 -0.4675 -5.6736 -1.3234 33 1 0.9985 -6.7538 0.4475 34 1 4.3419 -7.5394 1.0852 35 1 1.5241 -8.2329 1.2380 36 1 1.3536 -10.9119 1.4739 37 1 1.2598 -10.1724 3.0903 38 1 2.8754 -12.7993 1.0526 39 1 4.0955 -14.6879 2.0571 40 1 3.8768 -12.9621 5.8252 41 1 2.6576 -11.0175 4.9326 42 1 2.6830 -3.6840 0.7695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310750850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:14 Heat of formation + Delta-G solvation = 10.798267 kcal Electronic energy + Delta-G solvation = -27140.675925 eV Core-core repulsion = 23086.117396 eV Total energy + Delta-G solvation = -4054.558529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.97001 -41.25510 -40.33329 -39.09737 -36.96726 -36.25719 -34.91105 -34.76747 -32.43114 -32.08440 -31.73662 -29.86175 -29.03292 -27.24618 -24.37996 -24.05065 -23.77913 -22.87988 -22.00559 -21.73035 -20.22692 -19.50099 -18.73849 -17.63515 -17.50706 -17.46137 -17.11766 -16.78681 -16.63355 -16.46539 -16.40599 -15.97606 -15.94882 -15.29654 -14.94749 -14.67877 -14.54102 -14.52901 -14.01978 -13.68697 -13.53780 -13.36702 -13.08527 -12.93920 -12.79322 -12.57069 -12.31170 -12.18126 -12.13872 -11.64847 -11.47799 -11.33661 -11.03513 -10.87638 -10.54114 -10.42788 -10.03258 -9.58545 -9.37872 -8.74823 -8.59842 -6.35750 0.18630 0.25934 0.75090 0.93578 1.03594 1.36509 1.37329 1.49426 1.50533 1.90620 2.01599 2.21625 2.74389 2.86179 3.40088 3.48836 3.64802 3.74613 3.85915 4.00019 4.20352 4.27995 4.48529 4.48971 4.56943 4.65390 4.78580 4.92692 4.93755 5.02959 5.06584 5.10748 5.13435 5.24775 5.31883 5.35630 5.53487 5.77660 5.82208 5.94934 6.10636 6.12434 6.20094 6.36091 6.61674 6.70761 6.95204 7.01716 7.06891 7.17452 7.34122 8.33606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.001829 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.734963 B =15306.734319 C =15764.827754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.090 4.090 12 C -0.243 4.243 13 C 0.172 3.828 14 N -0.659 5.659 15 C 0.708 3.292 16 O -0.599 6.599 17 N -0.529 5.529 18 N -0.514 5.514 19 C 0.520 3.480 20 O -0.572 6.572 21 C -0.085 4.085 22 C -0.036 4.036 23 C -0.162 4.162 24 C 0.080 3.920 25 N -0.519 5.519 26 C 0.080 3.920 27 C -0.164 4.164 28 C -0.237 4.237 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.416 0.584 34 H 0.440 0.560 35 H 0.438 0.562 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.153 0.847 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -23.238 5.063 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.109 4.109 12 C -0.264 4.264 13 C 0.079 3.921 14 N -0.310 5.310 15 C 0.408 3.592 16 O -0.474 6.474 17 N -0.284 5.284 18 N -0.268 5.268 19 C 0.308 3.692 20 O -0.448 6.448 21 C -0.125 4.125 22 C -0.045 4.045 23 C -0.181 4.181 24 C -0.076 4.076 25 N -0.228 5.228 26 C -0.076 4.076 27 C -0.183 4.183 28 C -0.259 4.259 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.255 0.745 34 H 0.285 0.715 35 H 0.282 0.718 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.189 0.811 40 H 0.187 0.813 41 H 0.171 0.829 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.606 -23.279 5.289 24.014 hybrid contribution 0.074 1.371 -0.093 1.376 sum -2.533 -21.907 5.196 22.657 Atomic orbital electron populations 1.69843 1.08551 1.30501 1.35700 1.26634 0.95605 1.04044 0.91303 0.85264 0.78915 0.76266 0.79602 1.18527 1.18573 1.19131 1.19730 0.97453 0.92766 1.43276 0.92127 1.17819 0.92045 0.92297 0.89330 1.21326 0.99883 0.97782 1.02570 1.20850 0.98934 0.92067 0.99013 1.20455 1.01280 0.98279 1.06377 1.17226 0.95720 0.82854 0.96321 1.42176 1.05070 1.15138 1.68584 1.15817 0.83420 0.81143 0.78856 1.91078 1.55638 1.43415 1.57258 1.44455 1.06920 1.11146 1.65923 1.45012 1.06222 1.11923 1.63639 1.21454 0.90502 0.81107 0.76164 1.90795 1.19082 1.79074 1.55897 1.20749 0.96057 0.89627 1.06051 1.19923 0.96104 0.94735 0.93749 1.22326 0.99087 0.94589 1.02126 1.23132 0.94833 0.98454 0.91180 1.67650 1.19847 1.28912 1.06429 1.23105 0.94190 0.89578 1.00737 1.22322 0.99756 1.00034 0.96212 1.20950 1.04576 0.92329 1.08032 0.90005 0.87868 0.85623 0.84270 0.74514 0.71462 0.71773 0.82892 0.83230 0.82600 0.81141 0.81281 0.82894 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.89 10.94 21.82 0.24 -42.65 16 2 C 0.04 2.04 5.16 85.25 0.44 2.48 16 3 Si 0.98 39.80 29.59 68.60 2.03 41.83 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16 8 H 0.06 3.53 7.90 -2.91 -0.02 3.50 16 9 C 0.09 4.93 5.57 -21.31 -0.12 4.81 16 10 C -0.20 -10.13 8.69 22.75 0.20 -9.93 16 11 C -0.09 -3.82 10.02 22.20 0.22 -3.60 16 12 C -0.24 -9.16 9.97 22.58 0.23 -8.94 16 13 C 0.17 7.15 6.25 38.10 0.24 7.39 16 14 N -0.66 -19.91 5.29 -317.34 -1.68 -21.59 16 15 C 0.71 23.98 8.40 179.06 1.50 25.48 16 16 O -0.60 -27.53 14.93 -3.99 -0.06 -27.59 16 17 N -0.53 -13.17 6.26 -184.75 -1.16 -14.32 16 18 N -0.51 -7.42 6.25 -173.53 -1.09 -8.50 16 19 C 0.52 7.63 7.94 87.66 0.70 8.33 16 20 O -0.57 -14.28 15.87 -3.02 -0.05 -14.33 16 21 C -0.08 -0.43 5.88 29.10 0.17 -0.26 16 22 C -0.04 -0.43 4.41 -19.67 -0.09 -0.52 16 23 C -0.16 -2.02 9.82 22.36 0.22 -1.80 16 24 C 0.08 1.24 11.18 84.68 0.95 2.19 16 25 N -0.52 -10.11 10.36 -195.84 -2.03 -12.13 16 26 C 0.08 1.28 11.18 84.68 0.95 2.22 16 27 C -0.16 -2.14 9.82 22.36 0.22 -1.92 16 28 C -0.24 -12.34 8.39 22.85 0.19 -12.15 16 29 H 0.29 13.55 8.30 -92.70 -0.77 12.78 16 30 H 0.10 5.58 6.17 -2.91 -0.02 5.56 16 31 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 33 H 0.42 7.74 6.76 -92.71 -0.63 7.11 16 34 H 0.44 11.79 8.10 -213.33 -1.73 10.06 16 35 H 0.44 3.04 6.72 -213.32 -1.43 1.61 16 36 H 0.15 -0.27 8.10 -2.38 -0.02 -0.29 16 37 H 0.15 -0.14 8.10 -2.39 -0.02 -0.16 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 40 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.08 4.62 6.48 -2.91 -0.02 4.60 16 Total: -1.00 -83.64 367.52 -0.24 -83.87 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -2.67 Total: 30.23 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 6.23 Total: -14.81 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -5.71 Total: -99.21 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.11 Total: -41.92 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -83.64 -0.24 -83.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310750850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.673 kcal (2) G-P(sol) polarization free energy of solvation -83.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds