Wall clock time and date at job start Tue Mar 31 2020 23:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34990 * 125.97355 * 124.71877 * 10 9 7 12 12 C 1.35220 * 107.87616 * 179.89417 * 11 10 9 13 13 C 1.40462 * 107.86777 * 0.36341 * 12 11 10 14 14 N 1.39930 * 125.97896 * 179.77784 * 13 12 11 15 15 C 1.34774 * 120.00006 * 0.02562 * 14 13 12 16 16 O 1.21384 * 119.99897 * 0.02562 * 15 14 13 17 17 C 1.49343 * 120.00163 * 180.02562 * 15 14 13 18 18 O 1.21372 * 119.99566 * 0.02562 * 17 15 14 19 19 N 1.34767 * 120.00204 * 180.02562 * 17 15 14 20 20 C 1.47021 * 125.64947 * 0.02562 * 19 17 15 21 21 C 1.54319 * 107.27139 * 181.02313 * 20 19 17 22 22 C 1.55157 * 102.94650 * 22.19745 * 21 20 19 23 23 F 1.39900 * 111.00228 * 82.56535 * 22 21 20 24 24 C 1.52994 * 111.00929 * 206.38537 * 22 21 20 25 25 O 1.42897 * 109.47252 * 179.97438 * 24 22 21 26 26 C 1.47423 * 125.64815 * 179.71796 * 19 17 15 27 27 N 1.31278 * 108.03871 * 359.77278 * 13 12 11 28 28 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 30 30 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 31 31 H 1.07993 * 126.05905 * 0.02850 * 11 10 9 32 32 H 1.07998 * 126.06295 * 180.13798 * 12 11 10 33 33 H 0.96998 * 119.99767 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.88358 * 300.44655 * 20 19 17 35 35 H 1.09002 * 109.87931 * 61.45782 * 20 19 17 36 36 H 1.09004 * 110.72277 * 140.55733 * 21 20 19 37 37 H 1.08999 * 110.72584 * 263.83434 * 21 20 19 38 38 H 1.08996 * 109.47026 * 299.99708 * 24 22 21 39 39 H 1.09002 * 109.47113 * 59.99292 * 24 22 21 40 40 H 0.96704 * 114.00067 * 180.02562 * 25 24 22 41 41 H 1.09000 * 110.37051 * 274.74787 * 26 19 17 42 42 H 1.09005 * 110.37179 * 37.06639 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2451 -4.6237 0.8832 12 6 3.2607 -5.4449 0.5331 13 6 3.8696 -4.9120 -0.6151 14 7 4.9640 -5.4588 -1.2942 15 6 5.5282 -6.6008 -0.8539 16 8 5.0867 -7.1552 0.1316 17 6 6.6966 -7.1841 -1.5784 18 8 7.1383 -6.6295 -2.5634 19 7 7.2605 -8.3263 -1.1384 20 6 6.8281 -9.0987 0.0355 21 6 7.7792 -10.3070 0.1647 22 6 9.0407 -9.8407 -0.6089 23 9 9.8585 -9.0438 0.1994 24 6 9.8188 -11.0367 -1.1611 25 8 10.9710 -10.5709 -1.8663 26 6 8.4092 -9.0117 -1.7582 27 7 3.2321 -3.8112 -0.9395 28 1 -0.4850 0.8401 -0.0004 29 1 0.6242 -2.5609 0.8844 30 1 0.6244 -2.5529 -0.8956 31 1 1.5835 -4.7547 1.7267 32 1 3.5541 -6.3482 1.0473 33 1 5.3165 -5.0159 -2.0819 34 1 6.8914 -8.4796 0.9304 35 1 5.8037 -9.4437 -0.1047 36 1 8.0177 -10.5000 1.2107 37 1 7.3453 -11.1911 -0.3024 38 1 10.1314 -11.6784 -0.3373 39 1 9.1813 -11.6025 -1.8406 40 1 11.5126 -11.2770 -2.2448 41 1 8.0718 -9.6673 -2.5609 42 1 9.1258 -8.2834 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322773326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:24 Heat of formation + Delta-G solvation = -64.804558 kcal Electronic energy + Delta-G solvation = -28841.595448 eV Core-core repulsion = 24352.989310 eV Total energy + Delta-G solvation = -4488.606138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.08450 -41.16917 -40.32571 -38.82217 -37.96475 -36.99201 -34.96835 -33.38469 -32.37896 -31.05120 -29.94188 -29.42765 -27.61605 -26.69826 -24.82038 -23.45543 -22.62882 -21.31339 -20.96255 -20.11556 -19.52714 -18.28735 -17.65064 -17.35459 -16.86463 -16.64231 -16.60042 -16.36072 -15.88190 -15.38324 -15.30231 -14.89355 -14.82793 -14.50297 -14.27495 -14.01923 -13.72903 -13.62793 -13.43053 -12.96373 -12.92651 -12.62714 -12.41386 -12.30356 -12.04356 -11.85491 -11.63300 -11.37740 -11.22449 -11.05867 -10.88190 -10.72237 -10.54765 -10.27505 -10.04093 -9.56725 -9.53764 -9.17802 -8.64867 -8.24137 -7.59329 -6.26148 -4.31249 1.16200 1.86623 2.63440 2.94322 2.99707 3.23020 3.24319 3.30144 3.35656 3.61264 3.64886 3.69813 3.76325 3.96368 4.26624 4.33806 4.37880 4.49104 4.59655 4.73536 4.85232 5.09232 5.09978 5.21596 5.35068 5.41413 5.42082 5.55007 5.70328 5.71480 6.08794 6.30602 6.39829 6.77470 6.79625 6.95286 7.00752 7.21027 7.25138 7.53949 7.68306 7.84086 7.93041 7.96756 8.52983 8.77338 9.34687 10.82619 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.002002 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.566034 B =13985.792771 C =14474.849406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.314 5.314 11 C 0.054 3.946 12 C -0.285 4.285 13 C 0.251 3.749 14 N -0.598 5.598 15 C 0.517 3.483 16 O -0.495 6.495 17 C 0.532 3.468 18 O -0.512 6.512 19 N -0.594 5.594 20 C 0.105 3.895 21 C -0.151 4.151 22 C 0.107 3.893 23 F -0.185 7.185 24 C 0.067 3.933 25 O -0.563 6.563 26 C 0.094 3.906 27 N -0.294 5.294 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.423 0.577 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.386 0.614 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.167 -26.790 -0.574 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.096 5.096 11 C -0.096 4.096 12 C -0.316 4.316 13 C -0.002 4.002 14 N -0.246 5.246 15 C 0.296 3.704 16 O -0.368 6.368 17 C 0.315 3.685 18 O -0.387 6.387 19 N -0.329 5.329 20 C -0.017 4.017 21 C -0.190 4.190 22 C 0.088 3.912 23 F -0.165 7.165 24 C -0.012 4.012 25 O -0.369 6.369 26 C -0.028 4.028 27 N -0.125 5.125 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.188 0.812 32 H 0.178 0.822 33 H 0.261 0.739 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.111 0.889 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.499 -25.004 -1.046 29.436 hybrid contribution 0.811 0.039 0.106 0.818 sum 16.310 -24.965 -0.941 29.835 Atomic orbital electron populations 1.69917 1.06037 1.27679 1.49654 1.24946 0.95003 0.99591 0.94520 0.86311 0.79654 0.82026 0.78428 1.20286 1.20978 1.19694 1.21254 0.94024 0.89329 1.52232 0.91251 1.19801 0.85564 0.81237 0.99432 1.49175 1.22911 1.19643 1.17882 1.22581 1.00262 0.90061 0.96745 1.21503 1.02235 1.06374 1.01534 1.18997 0.91402 0.94758 0.95008 1.41961 1.28829 1.23457 1.30351 1.19692 0.84144 0.81443 0.85079 1.90689 1.61732 1.59613 1.24774 1.19596 0.84001 0.80286 0.84616 1.90812 1.62783 1.59458 1.25626 1.48084 1.32064 1.23149 1.29638 1.22261 0.98801 0.91843 0.88805 1.23352 0.93563 0.99159 1.02877 1.22037 0.89156 0.89871 0.90124 1.92921 1.74012 1.75400 1.74176 1.22546 0.88146 0.94047 0.96429 1.86544 1.38783 1.37761 1.73854 1.22880 0.88158 0.96958 0.94852 1.77418 1.03257 1.15830 1.16040 0.92295 0.92353 0.93536 0.81233 0.82150 0.73937 0.89271 0.89091 0.87894 0.88188 0.91629 0.91153 0.76576 0.88877 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.45 6.26 -5.20 -0.03 6.41 16 10 N -0.31 -7.18 3.67 -62.57 -0.23 -7.41 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.38 9.60 -39.82 -0.38 -5.76 16 13 C 0.25 5.02 8.10 -154.55 -1.25 3.77 16 14 N -0.60 -9.98 5.43 -11.58 -0.06 -10.04 16 15 C 0.52 7.76 7.82 -11.64 -0.09 7.67 16 16 O -0.50 -7.61 11.24 5.47 0.06 -7.55 16 17 C 0.53 7.25 7.91 -11.64 -0.09 7.16 16 18 O -0.51 -7.99 16.73 5.48 0.09 -7.90 16 19 N -0.59 -6.38 3.32 -170.93 -0.57 -6.94 16 20 C 0.11 0.87 5.49 -3.07 -0.02 0.86 16 21 C -0.15 -0.75 6.23 -24.90 -0.16 -0.91 16 22 C 0.11 0.76 1.37 -88.35 -0.12 0.64 16 23 F -0.18 -1.99 16.95 2.25 0.04 -1.95 16 24 C 0.07 0.28 6.30 37.15 0.23 0.52 16 25 O -0.56 -3.30 13.47 -35.23 -0.47 -3.77 16 26 C 0.09 0.82 6.09 -2.40 -0.01 0.81 16 27 N -0.29 -6.78 12.42 31.41 0.39 -6.39 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 32 H 0.16 2.80 5.91 -52.49 -0.31 2.49 16 33 H 0.42 6.55 8.29 -40.82 -0.34 6.21 16 34 H 0.09 0.85 7.58 -51.93 -0.39 0.46 16 35 H 0.09 0.72 7.69 -51.93 -0.40 0.33 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.24 8.04 -51.93 -0.42 -0.18 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.13 8.07 -51.93 -0.42 -0.29 16 40 H 0.39 0.36 9.12 45.56 0.42 0.78 16 41 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 42 H 0.10 1.07 8.03 -51.93 -0.42 0.66 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -34.99 366.08 -6.41 -41.40 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.35 Total: 4.45 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -2.54 Total: 8.59 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.27 Total: -55.24 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.32 Total: -19.22 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.99 -6.41 -41.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322773326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.408 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds