Wall clock time and date at job start Tue Mar 31 2020 23:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00017 * 3 2 1 5 5 H 1.48505 * 109.47045 * 30.00508 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99955 * 3 2 1 7 7 C 1.37873 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99540 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00377 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49616 * 59.92552 * 9 7 2 11 11 C 1.53039 * 109.50195 * 179.97438 * 9 7 2 12 12 C 1.53038 * 109.53773 * 181.31446 * 11 9 7 13 13 C 1.53192 * 109.31281 * 298.63055 * 12 11 9 14 14 N 1.46930 * 108.77315 * 54.63979 * 13 12 11 15 15 C 1.34782 * 120.62965 * 126.36103 * 14 13 12 16 16 O 1.21349 * 119.99847 * 188.64617 * 15 14 13 17 17 C 1.49446 * 120.00048 * 8.65741 * 15 14 13 18 18 O 1.21351 * 119.99948 * 6.77066 * 17 15 14 19 19 N 1.34781 * 119.99924 * 186.77562 * 17 15 14 20 20 C 1.47551 * 125.71879 * 0.04243 * 19 17 15 21 21 C 1.56180 * 105.82517 * 176.45609 * 20 19 17 22 22 H 1.09001 * 117.72691 * 160.30438 * 21 20 19 23 23 C 1.57652 * 98.58462 * 32.99766 * 21 20 19 24 24 C 1.48633 * 125.71739 * 179.97438 * 19 17 15 25 25 H 1.08998 * 114.67777 * 28.63786 * 24 19 17 26 26 C 1.55793 * 106.48809 * 261.91566 * 24 19 17 27 27 S 1.83685 * 102.74148 * 290.04677 * 26 24 19 28 28 O 1.42106 * 109.46834 * 245.38846 * 27 26 24 29 29 C 1.46919 * 118.73953 * 306.64246 * 14 13 12 30 30 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.45719 * 61.29575 * 11 9 7 32 32 H 1.09000 * 109.44697 * 301.33010 * 11 9 7 33 33 H 1.09000 * 109.49471 * 178.68770 * 12 11 9 34 34 H 1.08996 * 109.50182 * 58.58756 * 12 11 9 35 35 H 1.08995 * 109.59231 * 294.85208 * 13 12 11 36 36 H 1.08998 * 109.58650 * 174.42201 * 13 12 11 37 37 H 1.09000 * 110.18244 * 57.36092 * 20 19 17 38 38 H 1.09005 * 110.17512 * 295.54232 * 20 19 17 39 39 H 1.08998 * 111.56886 * 68.76513 * 23 21 20 40 40 H 1.08998 * 111.57593 * 194.03001 * 23 21 20 41 41 H 1.09000 * 110.75634 * 171.73073 * 26 24 19 42 42 H 1.09003 * 110.75612 * 48.35981 * 26 24 19 43 43 H 1.09003 * 109.59116 * 173.14601 * 29 14 13 44 44 H 1.08998 * 109.58670 * 293.56881 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8750 -0.6797 0.8897 11 6 4.0224 -2.6367 -0.0001 12 6 5.5524 -2.6378 0.0336 13 6 6.0872 -1.9355 -1.2184 14 7 5.4866 -0.5972 -1.3028 15 6 6.2632 0.4977 -1.4238 16 8 5.7712 1.6034 -1.3352 17 6 7.7303 0.3500 -1.6674 18 8 8.2028 -0.7476 -1.8786 19 7 8.5286 1.4358 -1.6525 20 6 8.0906 2.8237 -1.4089 21 6 9.3924 3.6866 -1.4050 22 1 9.2902 4.7593 -1.5689 23 6 10.2223 2.8653 -2.4644 24 6 9.9978 1.4358 -1.8772 25 1 10.3602 0.6320 -2.5180 26 6 10.6607 1.4612 -0.4676 27 16 10.2730 3.1536 0.1320 28 8 11.4776 3.8950 0.2692 29 6 4.0236 -0.4747 -1.2466 30 1 -0.4850 0.8400 -0.0004 31 1 3.6786 -3.1435 -0.9018 32 1 3.6394 -3.1573 0.8776 33 1 5.9149 -3.6655 0.0570 34 1 5.8972 -2.1095 0.9224 35 1 5.8198 -2.5125 -2.1035 36 1 7.1715 -1.8457 -1.1519 37 1 7.5888 2.8957 -0.4440 38 1 7.4237 3.1528 -2.2058 39 1 9.7994 2.9589 -3.4646 40 1 11.2760 3.1438 -2.4513 41 1 11.7382 1.3160 -0.5448 42 1 10.2141 0.7091 0.1829 43 1 3.7466 0.5784 -1.1989 44 1 3.5844 -0.9303 -2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329740900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:08 Heat of formation + Delta-G solvation = -54.620023 kcal Electronic energy + Delta-G solvation = -28862.254200 eV Core-core repulsion = 24908.010121 eV Total energy + Delta-G solvation = -3954.244079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.11851 -39.48460 -37.92831 -37.14523 -36.09464 -33.44018 -32.29169 -31.91101 -30.90848 -30.56153 -26.71788 -26.32506 -25.20145 -23.89597 -22.29079 -22.03166 -21.05017 -19.76036 -18.98681 -17.90964 -17.45264 -17.09084 -16.75204 -16.64293 -16.01018 -15.86103 -14.99739 -14.75835 -14.32026 -14.25458 -14.02687 -13.88571 -13.75481 -13.57827 -13.45947 -13.18231 -12.88908 -12.80410 -12.61199 -12.43161 -12.38494 -12.20086 -11.91568 -11.66076 -11.56040 -11.11052 -10.89147 -10.57323 -10.38625 -10.25175 -10.11828 -9.80024 -9.49981 -9.26861 -9.17721 -8.85899 -8.68432 -8.65516 -8.21058 -6.14418 -4.16464 1.17867 1.44815 1.87457 2.11175 3.24669 3.28429 3.31727 3.35945 3.42833 3.49486 3.72695 3.95349 4.16844 4.28665 4.34919 4.37244 4.78508 5.04300 5.04655 5.16949 5.18329 5.25077 5.34952 5.39288 5.43529 5.46719 5.51562 5.62189 5.73577 5.93654 6.05776 6.08277 6.20368 6.39903 6.43296 6.54946 6.69716 6.74311 6.89648 7.09621 7.37480 7.46563 7.65540 7.71215 8.14694 8.44752 8.89028 9.46262 10.97525 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.003656 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.137637 B = 7656.840579 C = 8585.676516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.259 1.259 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.006 3.994 10 H 0.032 0.968 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.072 3.928 14 N -0.569 5.569 15 C 0.497 3.503 16 O -0.525 6.525 17 C 0.530 3.470 18 O -0.509 6.509 19 N -0.601 5.601 20 C 0.132 3.868 21 C -0.399 4.399 22 H 0.152 0.848 23 C -0.143 4.143 24 C 0.146 3.854 25 H 0.125 0.875 26 C -0.438 4.438 27 S 1.217 4.783 28 O -0.847 6.847 29 C 0.099 3.901 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.104 3.322 -2.099 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.184 1.184 7 C -0.555 4.555 8 H 0.096 0.904 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.141 4.141 12 C -0.174 4.174 13 C -0.050 4.050 14 N -0.301 5.301 15 C 0.279 3.721 16 O -0.402 6.402 17 C 0.315 3.685 18 O -0.385 6.385 19 N -0.336 5.336 20 C 0.009 3.991 21 C -0.517 4.517 22 H 0.170 0.830 23 C -0.181 4.181 24 C 0.043 3.957 25 H 0.143 0.857 26 C -0.577 4.577 27 S 1.415 4.585 28 O -0.842 6.842 29 C -0.021 4.021 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.098 0.902 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.076 3.855 -1.215 20.479 hybrid contribution 1.462 0.778 -2.024 2.615 sum 21.538 4.633 -3.239 22.268 Atomic orbital electron populations 1.69892 1.06312 1.27191 1.49839 1.25076 0.94787 0.99178 0.94101 0.86977 0.79894 0.83407 0.78842 1.20095 1.22232 1.18396 1.20959 0.88106 0.94704 1.51683 0.90399 1.19406 0.96863 0.92387 0.92709 0.94980 1.21475 0.92386 0.98607 1.01587 1.22002 0.98154 0.99738 0.97524 1.22764 1.01880 0.81869 0.98468 1.48367 1.08269 1.06239 1.67225 1.19789 0.86654 0.85562 0.80125 1.90739 1.74489 1.24845 1.50149 1.20337 0.87649 0.83211 0.77352 1.90511 1.76014 1.23950 1.48056 1.48955 1.07597 1.07609 1.69484 1.22277 0.93697 0.78366 1.04808 1.29817 1.03194 1.04895 1.13749 0.82978 1.24033 1.00740 0.92547 1.00827 1.23001 0.79488 0.98688 0.94549 0.85734 1.28878 1.06832 1.18395 1.03553 1.71774 1.00262 0.86774 0.99704 1.93112 1.46681 1.65401 1.79008 1.22752 0.74721 1.02764 1.01866 0.92474 0.92502 0.92188 0.91491 0.92172 0.91573 0.85422 0.88277 0.88648 0.88568 0.89284 0.87271 0.85193 0.90152 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.88 21.80 24.32 -169.99 -4.13 17.67 16 4 H -0.27 -6.80 6.92 56.52 0.39 -6.41 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 7 C -0.52 -13.83 9.14 -34.44 -0.31 -14.14 16 8 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 9 C 0.01 0.13 1.83 -91.87 -0.17 -0.04 16 10 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 11 C -0.10 -1.89 5.11 -26.69 -0.14 -2.02 16 12 C -0.14 -2.03 6.08 -26.61 -0.16 -2.19 16 13 C 0.07 1.08 5.98 -3.71 -0.02 1.06 16 14 N -0.57 -10.20 2.98 -173.54 -0.52 -10.72 16 15 C 0.50 8.42 7.69 -11.58 -0.09 8.33 16 16 O -0.52 -9.81 13.65 5.50 0.08 -9.74 16 17 C 0.53 7.30 7.78 -11.58 -0.09 7.21 16 18 O -0.51 -7.40 13.47 5.50 0.07 -7.33 16 19 N -0.60 -6.42 2.88 -158.63 -0.46 -6.88 16 20 C 0.13 1.22 4.67 -1.76 -0.01 1.21 16 21 C -0.40 -2.91 5.75 -22.48 -0.13 -3.04 16 22 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 23 C -0.14 -1.09 6.26 -22.50 -0.14 -1.23 16 24 C 0.15 1.25 4.45 -63.57 -0.28 0.97 16 25 H 0.12 1.07 8.07 -51.93 -0.42 0.65 16 26 C -0.44 -3.31 6.97 38.65 0.27 -3.04 16 27 S 1.22 9.34 13.86 -107.50 -1.49 7.85 16 28 O -0.85 -11.33 18.16 -35.23 -0.64 -11.97 16 29 C 0.10 2.10 5.10 -3.93 -0.02 2.08 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.84 4.32 -54.77 -0.24 1.60 16 37 H 0.10 0.86 7.55 -51.93 -0.39 0.47 16 38 H 0.10 0.97 7.72 -51.93 -0.40 0.57 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.87 2.32 -51.93 -0.12 1.75 16 44 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -35.18 349.11 -8.63 -43.82 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.19 Total: 0.85 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.39 Total: -2.94 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.20 Total: -43.47 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.49 Total: -29.04 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.13 Total: 17.67 kcal Atomic # 16 Polarization: 9.34 SS G_CDS: -1.49 Total: 7.85 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.18 -8.63 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329740900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.802 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds