Wall clock time and date at job start Tue Mar 31 2020 23:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 120.00177 * 2 1 4 4 H 1.48501 * 109.46879 * 239.99928 * 3 2 1 5 5 H 1.48500 * 109.46602 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46820 * 119.99789 * 3 2 1 7 7 C 1.37877 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47668 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47534 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47202 * 180.02562 * 11 10 9 13 13 C 1.34228 * 116.99899 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00163 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99994 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.47248 * 60.00217 * 15 13 12 17 17 C 1.53003 * 109.46933 * 180.02562 * 15 13 12 18 18 C 1.53007 * 109.47028 * 186.72156 * 17 15 13 19 19 H 1.08997 * 109.52471 * 301.72157 * 18 17 15 20 20 C 1.53144 * 109.52278 * 181.59225 * 18 17 15 21 21 O 1.43077 * 109.15027 * 184.78694 * 20 18 17 22 22 C 1.43079 * 113.59211 * 57.94710 * 21 20 18 23 23 C 1.53138 * 109.15366 * 302.05196 * 22 21 20 24 24 O 1.43072 * 109.52235 * 61.91734 * 18 17 15 25 25 C 1.52998 * 109.47130 * 300.00189 * 15 13 12 26 26 F 1.39897 * 109.47134 * 53.84686 * 25 15 13 27 27 F 1.39902 * 109.47216 * 173.84976 * 25 15 13 28 28 F 1.39901 * 109.47425 * 293.84586 * 25 15 13 29 29 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46790 * 60.00083 * 9 7 2 31 31 H 1.09002 * 109.47043 * 300.00465 * 9 7 2 32 32 H 1.09002 * 109.47193 * 300.00280 * 10 9 7 33 33 H 1.09006 * 109.47023 * 60.00134 * 10 9 7 34 34 H 1.09002 * 109.46829 * 300.00159 * 11 10 9 35 35 H 1.08992 * 109.47160 * 59.99703 * 11 10 9 36 36 H 1.08999 * 109.47597 * 306.71947 * 17 15 13 37 37 H 1.09008 * 109.47300 * 66.72543 * 17 15 13 38 38 H 1.08994 * 109.52537 * 304.69027 * 20 18 17 39 39 H 1.08997 * 109.52131 * 64.88771 * 20 18 17 40 40 H 1.09005 * 109.51963 * 61.95486 * 22 21 20 41 41 H 1.08998 * 109.52370 * 182.14320 * 22 21 20 42 42 H 1.09004 * 109.52570 * 175.20993 * 23 22 21 43 43 H 1.08998 * 109.52417 * 295.34091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4238 -6.0907 -0.0006 13 6 1.9108 -7.3311 -0.0005 14 8 0.7129 -7.4894 -0.0014 15 6 2.8288 -8.5262 -0.0004 16 1 3.4576 -8.5013 0.8895 17 6 1.9954 -9.8094 -0.0010 18 6 2.9191 -11.0174 0.1679 19 1 3.6524 -11.0309 -0.6384 20 6 2.0905 -12.3047 0.1277 21 8 2.9441 -13.4209 0.3975 22 6 3.6178 -13.3353 1.6568 23 6 4.4463 -12.0480 1.6970 24 8 3.5927 -10.9319 1.4272 25 6 3.7114 -8.4913 -1.2497 26 9 4.3678 -7.2581 -1.3226 27 9 4.6573 -9.5198 -1.1812 28 9 2.9162 -8.6643 -2.3876 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6044 -0.8905 33 1 2.8719 -3.6044 0.8895 34 1 0.8533 -5.0451 0.8886 35 1 0.8539 -5.0446 -0.8913 36 1 1.2819 -9.7797 0.8225 37 1 1.4572 -9.8927 -0.9453 38 1 1.3051 -12.2561 0.8818 39 1 1.6426 -12.4189 -0.8594 40 1 2.8836 -13.3214 2.4624 41 1 4.2757 -14.1959 1.7771 42 1 4.8943 -11.9337 2.6841 43 1 5.2324 -12.0971 0.9436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330254228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:24 Heat of formation + Delta-G solvation = -342.376725 kcal Electronic energy + Delta-G solvation = -30831.046198 eV Core-core repulsion = 25847.421690 eV Total energy + Delta-G solvation = -4983.624508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.46870 -47.98811 -47.81969 -40.76071 -40.24299 -37.06368 -36.51721 -34.97802 -34.04192 -31.95587 -31.48395 -28.96672 -27.23803 -26.31286 -24.79472 -23.75511 -22.76878 -21.59599 -20.86731 -20.35366 -19.05833 -18.76270 -18.43973 -17.55188 -17.16371 -16.94271 -16.56180 -16.42718 -16.10791 -15.92710 -15.54768 -15.37539 -14.74467 -14.65931 -14.48750 -14.29409 -14.21008 -14.06178 -13.95445 -13.87411 -13.48916 -13.34965 -12.81646 -12.71401 -12.31799 -12.23896 -12.17069 -11.94137 -11.90254 -11.58382 -11.09345 -10.97965 -10.84751 -10.77861 -10.68781 -10.55916 -10.49077 -9.76921 -9.60148 -9.53353 -9.19816 -8.39807 -6.04725 -4.07845 1.70389 2.34216 2.51068 3.10207 3.24993 3.32125 3.36342 3.38411 3.39051 3.48550 3.78019 4.04091 4.25944 4.32583 4.42668 4.51278 4.58864 4.62717 4.64754 4.79215 4.81832 5.01629 5.07280 5.19372 5.29250 5.31225 5.38347 5.49567 5.50127 5.54730 5.93215 6.30195 6.49122 6.49813 6.53256 6.72248 6.94229 7.56640 7.59143 7.68366 7.93173 8.34066 8.98031 9.56493 11.06648 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.002157 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.925661 B =12980.526058 C =13207.579404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.344 6.344 13 C 0.464 3.536 14 O -0.486 6.486 15 C -0.128 4.128 16 H 0.159 0.841 17 C -0.101 4.101 18 C 0.034 3.966 19 H 0.091 0.909 20 C 0.033 3.967 21 O -0.377 6.377 22 C 0.022 3.978 23 C 0.026 3.974 24 O -0.373 6.373 25 C 0.463 3.537 26 F -0.160 7.160 27 F -0.172 7.172 28 F -0.176 7.176 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.909 -28.643 1.485 29.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.260 6.260 13 C 0.304 3.696 14 O -0.374 6.374 15 C -0.148 4.148 16 H 0.176 0.824 17 C -0.138 4.138 18 C -0.023 4.023 19 H 0.109 0.891 20 C -0.044 4.044 21 O -0.296 6.296 22 C -0.055 4.055 23 C -0.051 4.051 24 O -0.293 6.293 25 C 0.409 3.591 26 F -0.142 7.142 27 F -0.154 7.154 28 F -0.157 7.157 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.394 -28.505 1.449 29.483 hybrid contribution 0.479 0.987 -0.067 1.099 sum 7.872 -27.518 1.382 28.655 Atomic orbital electron populations 1.69949 1.06086 1.26905 1.50423 1.25027 0.94889 0.99374 0.95166 0.86597 0.79527 0.82840 0.78692 1.20160 1.21268 1.20167 1.21125 0.93109 0.90636 1.51171 0.92442 1.19049 0.93802 0.90688 0.97698 1.21789 0.99996 0.90690 1.02221 1.23649 0.91113 0.83250 1.02457 1.86558 1.42632 1.14518 1.82279 1.22489 0.87932 0.84937 0.74222 1.90702 1.15900 1.86674 1.44083 1.22350 0.98257 0.95012 0.99207 0.82358 1.21562 0.97183 0.88352 1.06742 1.23177 0.95629 0.95103 0.88414 0.89098 1.23222 0.92419 0.85511 1.03270 1.88114 1.61420 1.42621 1.37436 1.23286 0.96611 0.98974 0.86632 1.23258 0.92742 0.86155 1.02958 1.88070 1.61234 1.43131 1.36834 1.19982 0.79682 0.74463 0.85002 1.93318 1.81903 1.42395 1.96542 1.93126 1.66728 1.59041 1.96460 1.93222 1.73530 1.95160 1.53824 0.92818 0.96195 0.96219 0.91944 0.91980 0.91117 0.91145 0.87308 0.87671 0.91664 0.87368 0.91970 0.87685 0.87490 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.11 -2.24 5.53 -26.74 -0.15 -2.39 16 11 C 0.07 1.21 5.47 37.16 0.20 1.42 16 12 O -0.34 -5.55 8.98 -39.25 -0.35 -5.91 16 13 C 0.46 6.56 7.09 36.01 0.26 6.81 16 14 O -0.49 -7.79 15.63 -18.75 -0.29 -8.08 16 15 C -0.13 -1.33 2.34 -91.77 -0.22 -1.55 16 16 H 0.16 1.43 7.55 -51.93 -0.39 1.03 16 17 C -0.10 -0.86 3.70 -26.73 -0.10 -0.96 16 18 C 0.03 0.27 2.45 -26.65 -0.07 0.21 16 19 H 0.09 0.75 5.41 -51.93 -0.28 0.47 16 20 C 0.03 0.24 6.34 37.23 0.24 0.47 16 21 O -0.38 -3.18 10.85 -48.80 -0.53 -3.71 16 22 C 0.02 0.13 7.05 37.23 0.26 0.39 16 23 C 0.03 0.16 7.05 37.23 0.26 0.42 16 24 O -0.37 -3.18 9.79 -48.80 -0.48 -3.66 16 25 C 0.46 5.11 2.66 37.16 0.10 5.21 16 26 F -0.16 -2.11 15.92 2.25 0.04 -2.07 16 27 F -0.17 -1.70 14.25 2.25 0.03 -1.67 16 28 F -0.18 -2.04 16.29 2.25 0.04 -2.00 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 36 H 0.11 0.93 7.89 -51.93 -0.41 0.52 16 37 H 0.10 0.84 7.45 -51.92 -0.39 0.45 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -32.07 367.12 -6.14 -38.21 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -6.08 Total: -4.27 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.24 Total: -2.91 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.65 Total: -21.36 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.10 Total: -5.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.07 -6.14 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330254228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -304.165 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -336.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -342.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds