Wall clock time and date at job start Tue Mar 31 2020 23:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48502 * 109.46711 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 119.99580 * 3 2 1 6 6 H 1.48499 * 109.47106 * 240.00219 * 3 2 1 7 7 C 1.37880 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46755 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46775 * 180.02562 * 10 9 7 12 12 O 1.45193 * 109.46702 * 179.97438 * 11 10 9 13 13 C 1.34234 * 116.99630 * 180.02562 * 12 11 10 14 14 O 1.20822 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99720 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.47318 * 299.99344 * 15 13 12 17 17 C 1.53004 * 109.47009 * 180.02562 * 15 13 12 18 18 C 1.52999 * 109.47122 * 173.45842 * 17 15 13 19 19 H 1.09000 * 109.52579 * 58.70502 * 18 17 15 20 20 C 1.53146 * 109.52336 * 178.82981 * 18 17 15 21 21 O 1.43073 * 109.15013 * 175.21437 * 20 18 17 22 22 C 1.43079 * 113.59348 * 302.04927 * 21 20 18 23 23 C 1.53137 * 109.14837 * 57.95195 * 22 21 20 24 24 O 1.43065 * 109.52493 * 298.56966 * 18 17 15 25 25 C 1.52991 * 109.47216 * 59.99982 * 15 13 12 26 26 F 1.39898 * 109.47473 * 66.27074 * 25 15 13 27 27 F 1.39903 * 109.47143 * 186.27042 * 25 15 13 28 28 F 1.39898 * 109.47179 * 306.26765 * 25 15 13 29 29 H 0.96998 * 120.00183 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 299.99980 * 9 7 2 31 31 H 1.08993 * 109.47405 * 59.99807 * 9 7 2 32 32 H 1.09000 * 109.46504 * 299.99702 * 10 9 7 33 33 H 1.08987 * 109.47639 * 60.00028 * 10 9 7 34 34 H 1.08995 * 109.47140 * 299.99860 * 11 10 9 35 35 H 1.09001 * 109.47261 * 59.99637 * 11 10 9 36 36 H 1.09007 * 109.46713 * 293.45749 * 17 15 13 37 37 H 1.08999 * 109.47516 * 53.45511 * 17 15 13 38 38 H 1.09003 * 109.52679 * 295.11898 * 20 18 17 39 39 H 1.08997 * 109.52358 * 55.31255 * 20 18 17 40 40 H 1.08998 * 109.52027 * 177.85645 * 22 21 20 41 41 H 1.09003 * 109.52029 * 297.98440 * 22 21 20 42 42 H 1.08997 * 109.52528 * 64.59219 * 23 22 21 43 43 H 1.09001 * 109.52322 * 184.72273 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6965 1.2126 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 8 2.4241 -6.0906 0.0018 13 6 1.9110 -7.3310 0.0008 14 8 0.7132 -7.4894 -0.0001 15 6 2.8291 -8.5261 0.0019 16 1 3.4592 -8.5011 -0.8872 17 6 1.9959 -9.8094 -0.0002 18 6 2.9204 -11.0175 -0.1634 19 1 3.6450 -11.0343 0.6507 20 6 2.0905 -12.3043 -0.1364 21 8 2.9460 -13.4202 -0.4009 22 6 3.6331 -13.3309 -1.6527 23 6 4.4629 -12.0441 -1.6796 24 8 3.6085 -10.9274 -1.4144 25 6 3.7099 -8.4914 1.2524 26 9 2.9134 -8.6673 2.3890 27 9 4.6578 -9.5181 1.1838 28 9 4.3641 -7.2571 1.3279 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 0.8903 31 1 0.6248 -2.5571 -0.8896 32 1 2.8728 -3.6046 -0.8878 33 1 2.8714 -3.6039 0.8921 34 1 0.8529 -5.0447 0.8904 35 1 0.8548 -5.0450 -0.8895 36 1 1.4532 -9.8917 0.9416 37 1 1.2863 -9.7805 -0.8271 38 1 1.6319 -12.4216 0.8455 39 1 1.3132 -12.2525 -0.8987 40 1 4.2917 -14.1916 -1.7689 41 1 2.9076 -13.3148 -2.4661 42 1 5.2403 -12.0959 -0.9173 43 1 4.9224 -11.9274 -2.6611 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330254232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:31 Heat of formation + Delta-G solvation = -360.897739 kcal Electronic energy + Delta-G solvation = -30834.802883 eV Core-core repulsion = 25850.375244 eV Total energy + Delta-G solvation = -4984.427639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.36752 -48.85516 -48.77282 -41.87101 -40.90464 -38.24952 -37.22234 -35.97699 -35.75088 -33.72020 -32.33795 -29.62491 -28.97049 -27.02249 -25.97783 -24.95027 -23.87649 -22.21289 -22.17203 -21.84810 -19.96301 -19.70605 -19.41456 -18.71337 -18.35927 -17.88003 -17.69180 -17.40463 -16.97731 -16.92498 -16.50340 -16.20856 -16.01096 -15.65276 -15.57463 -15.56897 -15.18723 -14.90969 -14.87402 -14.81434 -14.50505 -14.32080 -14.13417 -13.87150 -13.75499 -13.40325 -13.35557 -12.81807 -12.81570 -12.65730 -12.54677 -12.42504 -12.20086 -12.12540 -11.99336 -11.65365 -11.49831 -11.45140 -11.31823 -11.24832 -10.56478 -10.14602 -8.21680 -6.32934 0.61379 1.20381 1.41901 1.44686 1.52704 1.56673 2.40961 2.48173 2.51798 2.66948 2.77136 2.84536 3.12167 3.30265 3.38066 3.70041 3.80192 3.91609 3.97880 3.99897 4.00447 4.10932 4.19645 4.34539 4.38842 4.43777 4.59153 4.66078 4.78444 4.78573 4.80579 4.89561 4.94050 5.05638 5.26685 5.48834 5.63776 5.80174 5.98241 6.00486 6.18708 6.36766 6.82494 7.36373 8.90152 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.002157 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.191151 B =12978.488111 C =13204.935736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.095 4.095 11 C 0.077 3.923 12 O -0.348 6.348 13 C 0.464 3.536 14 O -0.505 6.505 15 C -0.117 4.117 16 H 0.176 0.824 17 C -0.098 4.098 18 C 0.040 3.960 19 H 0.087 0.913 20 C 0.031 3.969 21 O -0.396 6.396 22 C 0.018 3.982 23 C 0.021 3.979 24 O -0.389 6.389 25 C 0.465 3.535 26 F -0.180 7.180 27 F -0.163 7.163 28 F -0.174 7.174 29 H 0.265 0.735 30 H -0.003 1.003 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -29.498 -1.865 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.133 4.133 11 C 0.004 3.996 12 O -0.264 6.264 13 C 0.306 3.694 14 O -0.393 6.393 15 C -0.137 4.137 16 H 0.194 0.806 17 C -0.135 4.135 18 C -0.018 4.018 19 H 0.105 0.895 20 C -0.046 4.046 21 O -0.315 6.315 22 C -0.058 4.058 23 C -0.055 4.055 24 O -0.308 6.308 25 C 0.411 3.589 26 F -0.161 7.161 27 F -0.144 7.144 28 F -0.155 7.155 29 H 0.073 0.927 30 H 0.016 0.984 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.829 -29.387 -1.831 30.739 hybrid contribution 0.044 1.156 0.175 1.170 sum 8.874 -28.231 -1.656 29.639 Atomic orbital electron populations 1.70086 1.07798 1.27983 1.51380 1.25995 0.95802 1.03452 0.94628 0.85462 0.78219 0.77885 0.79259 1.20920 1.19156 1.19045 1.21590 0.93716 0.91918 1.50952 0.91783 1.18926 0.94217 0.92307 0.95592 1.21473 0.98805 0.90406 1.02602 1.23271 0.90773 0.83122 1.02439 1.86538 1.42089 1.15040 1.82704 1.23120 0.88314 0.84865 0.73147 1.90696 1.16970 1.86772 1.44847 1.22413 0.97891 0.93794 0.99588 0.80647 1.21596 0.97101 0.87592 1.07202 1.23080 0.95235 0.94992 0.88451 0.89547 1.23290 0.92216 0.84874 1.04179 1.88087 1.61224 1.42979 1.39258 1.23451 0.96675 0.99651 0.86044 1.23438 0.92436 0.85636 1.03996 1.88037 1.61099 1.44045 1.37666 1.20009 0.79733 0.74170 0.85015 1.93216 1.73559 1.95105 1.54225 1.93154 1.66242 1.58617 1.96409 1.93294 1.82306 1.43306 1.96600 0.92673 0.98426 0.98221 0.91326 0.91704 0.91463 0.90970 0.87153 0.87120 0.86234 0.91252 0.85844 0.91649 0.91904 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.10 -3.90 5.53 30.60 0.17 -3.73 16 11 C 0.08 2.75 5.47 71.98 0.39 3.14 16 12 O -0.35 -10.93 8.98 -51.46 -0.46 -11.40 16 13 C 0.46 12.66 7.10 71.24 0.51 13.16 16 14 O -0.51 -15.81 15.64 21.98 0.34 -15.46 16 15 C -0.12 -2.26 2.34 -11.54 -0.03 -2.29 16 16 H 0.18 2.82 7.54 -2.39 -0.02 2.80 16 17 C -0.10 -1.52 3.70 30.60 0.11 -1.41 16 18 C 0.04 0.57 2.43 30.64 0.07 0.64 16 19 H 0.09 1.30 5.44 -2.39 -0.01 1.28 16 20 C 0.03 0.40 6.34 72.03 0.46 0.86 16 21 O -0.40 -6.08 10.85 -136.05 -1.48 -7.55 16 22 C 0.02 0.19 7.05 72.03 0.51 0.69 16 23 C 0.02 0.22 7.05 72.03 0.51 0.73 16 24 O -0.39 -5.91 9.77 -136.05 -1.33 -7.24 16 25 C 0.47 9.65 2.66 71.98 0.19 9.84 16 26 F -0.18 -3.97 16.29 44.97 0.73 -3.23 16 27 F -0.16 -2.97 14.26 44.97 0.64 -2.33 16 28 F -0.17 -4.39 15.91 44.97 0.72 -3.67 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.43 8.13 -2.39 -0.02 2.41 16 35 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 36 H 0.11 1.61 7.45 -2.38 -0.02 1.59 16 37 H 0.11 1.72 7.90 -2.39 -0.02 1.70 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.01 367.12 6.24 -61.77 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.03 Total: 6.13 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 3.74 Total: -6.81 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -2.92 Total: -41.65 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 2.09 Total: -9.23 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.01 6.24 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330254232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -299.127 kcal (2) G-P(sol) polarization free energy of solvation -68.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -367.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -360.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds