Wall clock time and date at job start Tue Mar 31 2020 23:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99322 * 2 1 4 4 H 1.48511 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47259 * 300.00087 * 3 2 1 6 6 H 1.48499 * 109.47113 * 60.00626 * 3 2 1 7 7 C 1.37871 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46176 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31034 * 181.38562 * 10 9 7 12 12 N 1.46924 * 108.77456 * 305.35951 * 11 10 9 13 13 C 1.34774 * 120.62782 * 233.58404 * 12 11 10 14 14 O 1.21345 * 120.00382 * 8.71773 * 13 12 11 15 15 C 1.49456 * 119.99633 * 188.70605 * 13 12 11 16 16 O 1.21346 * 119.99870 * 6.76328 * 15 13 12 17 17 N 1.34775 * 119.99864 * 186.48118 * 15 13 12 18 18 C 1.47554 * 125.72065 * 0.30505 * 17 15 13 19 19 C 1.56188 * 105.83042 * 176.45097 * 18 17 15 20 20 H 1.08996 * 116.99767 * 159.87362 * 19 18 17 21 21 C 1.57661 * 98.57476 * 33.00056 * 19 18 17 22 22 C 1.48633 * 125.71885 * 179.97438 * 17 15 13 23 23 H 1.08998 * 113.89056 * 29.06873 * 22 17 15 24 24 C 1.55791 * 106.49130 * 261.91990 * 22 17 15 25 25 S 1.83046 * 102.82143 * 289.89550 * 24 22 17 26 26 O 1.42103 * 109.58408 * 245.51996 * 25 24 22 27 27 C 1.46918 * 118.73844 * 53.86620 * 12 11 10 28 28 C 1.53040 * 109.45698 * 300.06868 * 9 7 2 29 29 H 0.96996 * 120.00635 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.44737 * 60.02973 * 9 7 2 31 31 H 1.08995 * 109.50125 * 61.43220 * 10 9 7 32 32 H 1.09006 * 109.52107 * 301.35140 * 10 9 7 33 33 H 1.09009 * 109.58544 * 185.57450 * 11 10 9 34 34 H 1.08997 * 109.59050 * 65.15072 * 11 10 9 35 35 H 1.08999 * 110.17653 * 295.54084 * 18 17 15 36 36 H 1.09002 * 110.18145 * 57.28721 * 18 17 15 37 37 H 1.09004 * 111.57262 * 68.77328 * 21 19 18 38 38 H 1.09009 * 111.56899 * 194.08555 * 21 19 18 39 39 H 1.08999 * 110.75515 * 48.35638 * 24 22 17 40 40 H 1.08998 * 110.76009 * 171.54434 * 24 22 17 41 41 H 1.08997 * 109.59060 * 65.91968 * 27 12 11 42 42 H 1.09000 * 109.58823 * 186.35197 * 27 12 11 43 43 H 1.08999 * 109.50182 * 298.56665 * 28 9 7 44 44 H 1.09004 * 109.50032 * 58.63041 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2461 -3.6620 -0.0005 11 6 1.4771 -4.9865 -0.0355 12 7 0.5228 -5.0089 1.0814 13 6 0.5120 -6.0352 1.9549 14 8 1.3916 -6.8704 1.9206 15 6 -0.5833 -6.1444 2.9659 16 8 -1.5266 -5.3823 2.9233 17 7 -0.5260 -7.0931 3.9216 18 6 0.5567 -8.0811 4.0909 19 6 0.2016 -8.8854 5.3818 20 1 0.6717 -9.8614 5.5016 21 6 -1.3697 -8.8457 5.2586 22 6 -1.5396 -7.3149 4.9858 23 1 -2.5508 -7.0257 4.6996 24 6 -1.0020 -6.6042 6.2637 25 16 0.4183 -7.6538 6.7451 26 8 0.1485 -8.2768 7.9935 27 6 -0.4237 -3.8943 1.2243 28 6 0.3707 -2.5795 1.2486 29 1 -0.4851 0.8400 0.0004 30 1 0.6248 -2.5566 -0.8907 31 1 2.8559 -3.6192 0.9018 32 1 2.8890 -3.5914 -0.8779 33 1 2.1756 -5.8174 0.0641 34 1 0.9376 -5.0711 -0.9788 35 1 0.5943 -8.7489 3.2302 36 1 1.5133 -7.5732 4.2142 37 1 -1.7214 -9.4471 4.4203 38 1 -1.8523 -9.1414 6.1903 39 1 -0.6746 -5.5905 6.0330 40 1 -1.7588 -6.5950 7.0480 41 1 -1.1150 -3.8915 0.3816 42 1 -0.9797 -4.0040 2.1554 43 1 0.9985 -2.5469 2.1390 44 1 -0.3215 -1.7376 1.2606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332672774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:59 Heat of formation + Delta-G solvation = -62.211660 kcal Electronic energy + Delta-G solvation = -28401.011315 eV Core-core repulsion = 24446.438039 eV Total energy + Delta-G solvation = -3954.573277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03905 -39.38357 -37.84148 -36.94040 -36.05287 -33.58384 -32.13178 -31.26878 -30.84412 -30.06120 -26.80560 -26.57184 -24.98516 -23.02018 -22.53376 -21.99410 -20.96425 -19.77758 -18.83371 -17.83093 -17.34925 -17.00200 -16.65959 -16.18154 -15.84928 -15.82820 -14.95013 -14.67423 -14.54304 -14.06409 -13.97713 -13.82497 -13.53522 -13.41927 -13.13879 -12.90544 -12.78220 -12.76291 -12.39225 -12.36237 -12.34470 -11.86512 -11.67253 -11.54349 -11.40459 -10.98065 -10.83146 -10.58479 -10.39780 -10.22098 -10.10057 -9.71535 -9.25971 -9.21349 -9.17034 -8.68033 -8.60126 -8.37525 -8.10997 -6.02715 -4.09328 1.22427 1.51613 1.93338 2.17122 3.27142 3.30153 3.32920 3.36031 3.39350 3.44083 3.76805 3.99451 4.23168 4.35845 4.40562 4.40842 4.84629 5.08043 5.11957 5.21128 5.27205 5.29660 5.42916 5.49553 5.55867 5.61160 5.75692 5.81986 5.90414 6.04409 6.20979 6.39670 6.48074 6.61378 6.73856 6.93292 7.01850 7.12285 7.24289 7.63260 7.66288 7.77808 7.91795 8.04261 8.19173 8.39685 8.94364 9.55941 11.02642 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002822 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.359549 B = 9921.286619 C =10360.722433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.561 5.561 13 C 0.502 3.498 14 O -0.538 6.538 15 C 0.527 3.473 16 O -0.500 6.500 17 N -0.603 5.603 18 C 0.134 3.866 19 C -0.401 4.401 20 H 0.151 0.849 21 C -0.143 4.143 22 C 0.147 3.853 23 H 0.125 0.875 24 C -0.441 4.441 25 S 1.222 4.778 26 O -0.848 6.848 27 C 0.065 3.935 28 C -0.122 4.122 29 H 0.260 0.740 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.037 0.963 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -16.399 9.101 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.014 4.014 12 N -0.292 5.292 13 C 0.284 3.716 14 O -0.417 6.417 15 C 0.311 3.689 16 O -0.375 6.375 17 N -0.340 5.340 18 C 0.011 3.989 19 C -0.519 4.519 20 H 0.169 0.831 21 C -0.181 4.181 22 C 0.043 3.957 23 H 0.142 0.858 24 C -0.580 4.580 25 S 1.420 4.580 26 O -0.843 6.843 27 C -0.055 4.055 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.056 0.944 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.046 -16.120 9.789 18.860 hybrid contribution -1.665 0.048 -0.136 1.671 sum -1.711 -16.071 9.653 18.826 Atomic orbital electron populations 1.69848 1.05840 1.26376 1.50824 1.24965 0.94853 0.99068 0.95108 0.86571 0.80162 0.83908 0.77552 1.19831 1.21108 1.21064 1.21222 0.92937 0.90536 1.50339 0.92647 1.18684 0.92676 0.91696 0.94250 1.22005 0.98903 0.93871 1.01211 1.21900 0.91694 1.00335 0.87427 1.48213 1.35041 1.19850 1.26119 1.19715 0.85875 0.83120 0.82910 1.90682 1.37357 1.41686 1.71992 1.20249 0.87482 0.79962 0.81165 1.90579 1.34719 1.39657 1.72563 1.48959 1.23682 1.32459 1.28901 1.22240 0.90274 0.90355 0.96029 1.29875 1.00408 1.10999 1.10590 0.83085 1.24079 0.94237 0.95679 1.04133 1.23067 0.94396 0.93154 0.85070 0.85754 1.28824 1.14896 1.11187 1.03066 1.71649 1.06719 0.95775 0.83811 1.93107 1.83031 1.74624 1.33585 1.23192 0.91431 0.86027 1.04882 1.22104 0.99918 0.94861 0.99155 0.93010 0.95462 0.92725 0.91904 0.89978 0.91567 0.88915 0.88449 0.88607 0.89372 0.84973 0.87231 0.91990 0.86121 0.94380 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 11.31 55.43 0.63 -23.68 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.36 8.56 -34.44 -0.29 -13.66 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.05 2.06 -91.73 -0.19 0.86 16 10 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 11 C 0.11 1.81 6.44 -3.71 -0.02 1.79 16 12 N -0.56 -9.69 2.97 -173.01 -0.51 -10.20 16 13 C 0.50 7.92 7.69 -11.58 -0.09 7.83 16 14 O -0.54 -8.51 13.65 5.50 0.08 -8.44 16 15 C 0.53 7.46 7.78 -11.58 -0.09 7.37 16 16 O -0.50 -8.13 13.45 5.50 0.07 -8.06 16 17 N -0.60 -6.44 2.88 -158.47 -0.46 -6.90 16 18 C 0.13 1.13 4.67 -1.76 -0.01 1.12 16 19 C -0.40 -2.75 5.76 -22.47 -0.13 -2.87 16 20 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.14 -1.09 6.28 -22.35 -0.14 -1.23 16 22 C 0.15 1.32 4.46 -63.43 -0.28 1.04 16 23 H 0.12 1.17 8.04 -51.93 -0.42 0.75 16 24 C -0.44 -3.62 6.95 38.65 0.27 -3.35 16 25 S 1.22 9.37 13.83 -107.50 -1.49 7.88 16 26 O -0.85 -11.41 18.16 -35.23 -0.64 -12.05 16 27 C 0.07 1.22 6.01 -3.49 -0.02 1.20 16 28 C -0.12 -2.69 5.17 -26.38 -0.14 -2.83 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.29 7.01 -51.92 -0.36 0.93 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 36 H 0.10 0.73 7.55 -51.93 -0.39 0.34 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.69 8.13 -51.92 -0.42 0.27 16 39 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.12 2.23 4.30 -54.84 -0.24 1.99 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.10 2.62 6.03 -51.93 -0.31 2.30 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -33.00 355.77 -9.67 -42.67 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.31 Total: 1.55 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.37 Total: -3.69 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.34 Total: -40.78 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.49 Total: -28.55 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.49 Total: 7.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.00 -9.67 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332672774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.547 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds