Wall clock time and date at job start Tue Mar 31 2020 23:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99322 * 2 1 4 4 H 1.48511 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47259 * 300.00087 * 3 2 1 6 6 H 1.48499 * 109.47113 * 60.00626 * 3 2 1 7 7 C 1.37871 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46176 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31034 * 181.38562 * 10 9 7 12 12 N 1.46924 * 108.77456 * 305.35951 * 11 10 9 13 13 C 1.34774 * 120.62782 * 233.58404 * 12 11 10 14 14 O 1.21345 * 120.00382 * 8.71773 * 13 12 11 15 15 C 1.49456 * 119.99633 * 188.70605 * 13 12 11 16 16 O 1.21346 * 119.99870 * 6.76328 * 15 13 12 17 17 N 1.34775 * 119.99864 * 186.48118 * 15 13 12 18 18 C 1.47554 * 125.72065 * 0.30505 * 17 15 13 19 19 C 1.56188 * 105.83042 * 176.45097 * 18 17 15 20 20 H 1.08996 * 116.99767 * 159.87362 * 19 18 17 21 21 C 1.57661 * 98.57476 * 33.00056 * 19 18 17 22 22 C 1.48633 * 125.71885 * 179.97438 * 17 15 13 23 23 H 1.08998 * 113.89056 * 29.06873 * 22 17 15 24 24 C 1.55791 * 106.49130 * 261.91990 * 22 17 15 25 25 S 1.83046 * 102.82143 * 289.89550 * 24 22 17 26 26 O 1.42103 * 109.58408 * 245.51996 * 25 24 22 27 27 C 1.46918 * 118.73844 * 53.86620 * 12 11 10 28 28 C 1.53040 * 109.45698 * 300.06868 * 9 7 2 29 29 H 0.96996 * 120.00635 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.44737 * 60.02973 * 9 7 2 31 31 H 1.08995 * 109.50125 * 61.43220 * 10 9 7 32 32 H 1.09006 * 109.52107 * 301.35140 * 10 9 7 33 33 H 1.09009 * 109.58544 * 185.57450 * 11 10 9 34 34 H 1.08997 * 109.59050 * 65.15072 * 11 10 9 35 35 H 1.08999 * 110.17653 * 295.54084 * 18 17 15 36 36 H 1.09002 * 110.18145 * 57.28721 * 18 17 15 37 37 H 1.09004 * 111.57262 * 68.77328 * 21 19 18 38 38 H 1.09009 * 111.56899 * 194.08555 * 21 19 18 39 39 H 1.08999 * 110.75515 * 48.35638 * 24 22 17 40 40 H 1.08998 * 110.76009 * 171.54434 * 24 22 17 41 41 H 1.08997 * 109.59060 * 65.91968 * 27 12 11 42 42 H 1.09000 * 109.58823 * 186.35197 * 27 12 11 43 43 H 1.08999 * 109.50182 * 298.56665 * 28 9 7 44 44 H 1.09004 * 109.50032 * 58.63041 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2461 -3.6620 -0.0005 11 6 1.4771 -4.9865 -0.0355 12 7 0.5228 -5.0089 1.0814 13 6 0.5120 -6.0352 1.9549 14 8 1.3916 -6.8704 1.9206 15 6 -0.5833 -6.1444 2.9659 16 8 -1.5266 -5.3823 2.9233 17 7 -0.5260 -7.0931 3.9216 18 6 0.5567 -8.0811 4.0909 19 6 0.2016 -8.8854 5.3818 20 1 0.6717 -9.8614 5.5016 21 6 -1.3697 -8.8457 5.2586 22 6 -1.5396 -7.3149 4.9858 23 1 -2.5508 -7.0257 4.6996 24 6 -1.0020 -6.6042 6.2637 25 16 0.4183 -7.6538 6.7451 26 8 0.1485 -8.2768 7.9935 27 6 -0.4237 -3.8943 1.2243 28 6 0.3707 -2.5795 1.2486 29 1 -0.4851 0.8400 0.0004 30 1 0.6248 -2.5566 -0.8907 31 1 2.8559 -3.6192 0.9018 32 1 2.8890 -3.5914 -0.8779 33 1 2.1756 -5.8174 0.0641 34 1 0.9376 -5.0711 -0.9788 35 1 0.5943 -8.7489 3.2302 36 1 1.5133 -7.5732 4.2142 37 1 -1.7214 -9.4471 4.4203 38 1 -1.8523 -9.1414 6.1903 39 1 -0.6746 -5.5905 6.0330 40 1 -1.7588 -6.5950 7.0480 41 1 -1.1150 -3.8915 0.3816 42 1 -0.9797 -4.0040 2.1554 43 1 0.9985 -2.5469 2.1390 44 1 -0.3215 -1.7376 1.2606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332672774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:58 Heat of formation + Delta-G solvation = -84.769429 kcal Electronic energy + Delta-G solvation = -28401.989494 eV Core-core repulsion = 24446.438039 eV Total energy + Delta-G solvation = -3955.551455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13375 -40.47574 -38.94213 -38.41288 -36.92523 -35.32561 -33.14255 -32.88249 -31.71785 -31.49711 -28.36804 -27.33739 -26.37948 -24.37794 -24.04305 -22.96087 -22.04588 -20.97126 -20.15474 -18.75641 -18.40174 -18.31091 -17.93397 -17.53863 -17.01841 -16.84352 -16.45688 -15.84186 -15.70505 -15.34353 -14.98140 -14.81420 -14.65776 -14.58190 -14.39938 -14.27650 -14.19611 -13.87394 -13.58844 -13.35845 -13.19050 -13.04682 -13.03303 -12.81217 -12.50565 -12.42723 -12.31622 -12.10444 -12.04902 -11.86995 -11.42940 -11.02177 -10.95759 -10.89483 -10.41731 -10.20011 -9.90986 -9.59743 -9.34199 -8.03991 -6.17588 0.34165 0.56854 1.13127 1.28415 1.42931 1.46235 1.56096 2.10967 2.30463 2.47088 2.64454 2.99939 3.18691 3.22854 3.33763 3.53141 3.71094 4.13694 4.17945 4.34063 4.37729 4.42000 4.45492 4.55610 4.60644 4.62446 4.68037 4.73039 4.81143 4.85605 4.90470 4.93851 5.00230 5.15146 5.22271 5.25262 5.45337 5.52211 5.67665 5.97190 6.02312 6.16370 6.30272 6.42284 6.57903 6.92696 6.94345 7.50507 8.99448 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002822 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.359549 B = 9921.286619 C =10360.722433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.042 3.958 10 C -0.112 4.112 11 C 0.114 3.886 12 N -0.572 5.572 13 C 0.505 3.495 14 O -0.533 6.533 15 C 0.527 3.473 16 O -0.527 6.527 17 N -0.593 5.593 18 C 0.126 3.874 19 C -0.382 4.382 20 H 0.176 0.824 21 C -0.141 4.141 22 C 0.139 3.861 23 H 0.121 0.879 24 C -0.441 4.441 25 S 1.262 4.738 26 O -0.904 6.904 27 C 0.083 3.917 28 C -0.112 4.112 29 H 0.260 0.740 30 H 0.000 1.000 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.129 0.871 43 H 0.030 0.970 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -18.036 9.530 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.150 4.150 11 C -0.007 4.007 12 N -0.303 5.303 13 C 0.288 3.712 14 O -0.412 6.412 15 C 0.311 3.689 16 O -0.405 6.405 17 N -0.328 5.328 18 C 0.004 3.996 19 C -0.500 4.500 20 H 0.193 0.807 21 C -0.179 4.179 22 C 0.037 3.963 23 H 0.139 0.861 24 C -0.580 4.580 25 S 1.462 4.538 26 O -0.900 6.900 27 C -0.038 4.038 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.049 0.951 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.923 -17.805 10.256 20.568 hybrid contribution -1.951 0.483 -0.292 2.031 sum -1.028 -17.322 9.964 20.010 Atomic orbital electron populations 1.69983 1.06991 1.26948 1.51505 1.25679 0.95623 1.02131 0.95024 0.85640 0.79193 0.80204 0.77395 1.19225 1.20959 1.20860 1.21595 0.93029 0.92098 1.50088 0.92998 1.18657 0.93157 0.92404 0.93449 1.21841 0.98139 0.93756 1.01304 1.21839 0.91805 0.99206 0.87873 1.48152 1.35134 1.20105 1.26947 1.19951 0.86132 0.82492 0.82655 1.90677 1.37367 1.41308 1.71837 1.19901 0.86717 0.80629 0.81613 1.90554 1.35468 1.41097 1.73395 1.48983 1.24472 1.31445 1.27855 1.22473 0.90092 0.90185 0.96871 1.29844 0.99930 1.11566 1.08681 0.80698 1.24091 0.94789 0.94427 1.04607 1.23256 0.93935 0.94482 0.84674 0.86138 1.28808 1.15140 1.11469 1.02573 1.71149 1.05410 0.95014 0.82254 1.93013 1.83957 1.76102 1.36917 1.22877 0.90945 0.84934 1.05081 1.21866 0.99199 0.95813 0.98207 0.93110 0.98167 0.93164 0.91203 0.88186 0.90802 0.88534 0.87083 0.87637 0.89244 0.84645 0.87166 0.92679 0.85399 0.95146 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 11.31 21.44 0.24 -50.89 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -28.03 8.56 25.60 0.22 -27.81 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 1.98 2.06 -11.51 -0.02 1.95 16 10 C -0.11 -4.26 5.30 30.67 0.16 -4.10 16 11 C 0.11 3.67 6.44 86.36 0.56 4.22 16 12 N -0.57 -19.09 2.97 -819.64 -2.43 -21.52 16 13 C 0.51 14.96 7.69 87.27 0.67 15.63 16 14 O -0.53 -15.36 13.65 -3.23 -0.04 -15.40 16 15 C 0.53 14.11 7.78 87.27 0.68 14.79 16 16 O -0.53 -16.74 13.45 -3.23 -0.04 -16.79 16 17 N -0.59 -11.36 2.88 -773.65 -2.23 -13.58 16 18 C 0.13 1.72 4.67 87.29 0.41 2.13 16 19 C -0.38 -4.00 5.76 33.35 0.19 -3.81 16 20 H 0.18 1.15 8.14 -2.39 -0.02 1.13 16 21 C -0.14 -1.78 6.28 33.43 0.21 -1.57 16 22 C 0.14 2.26 4.46 46.73 0.21 2.47 16 23 H 0.12 2.12 8.04 -2.39 -0.02 2.10 16 24 C -0.44 -6.58 6.95 72.95 0.51 -6.08 16 25 S 1.26 16.93 13.83 -56.49 -0.78 16.15 16 26 O -0.90 -23.24 18.16 -148.98 -2.71 -25.95 16 27 C 0.08 3.12 6.01 86.51 0.52 3.64 16 28 C -0.11 -5.07 5.17 30.82 0.16 -4.91 16 29 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.10 2.88 7.01 -2.38 -0.02 2.87 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.10 1.37 7.72 -2.39 -0.02 1.36 16 36 H 0.11 1.29 7.55 -2.39 -0.02 1.27 16 37 H 0.11 1.19 8.14 -2.38 -0.02 1.18 16 38 H 0.09 1.20 8.13 -2.38 -0.02 1.18 16 39 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.13 4.73 4.30 -48.51 -0.21 4.52 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 3.78 6.03 -2.38 -0.01 3.77 16 Total: -1.00 -71.11 355.77 -0.23 -71.34 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.82 Total: 14.34 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.92 Total: -2.25 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.41 Total: -86.00 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -2.79 Total: -58.13 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 16.93 SS G_CDS: -0.78 Total: 16.15 kcal Total: -71.11 -0.23 -71.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332672774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -71.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds