Wall clock time and date at job start Wed Apr 1 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 119.91939 * 2 1 4 4 C 1.38450 * 120.27668 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.94172 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.11674 * 0.04054 * 4 3 2 7 7 C 1.39541 * 119.84204 * 359.97438 * 6 4 3 8 8 C 1.47853 * 120.13690 * 179.97438 * 7 6 4 9 9 O 1.21550 * 119.99894 * 140.91905 * 8 7 6 10 10 N 1.34774 * 120.00150 * 320.91452 * 8 7 6 11 11 C 1.46500 * 120.00015 * 4.86374 * 10 8 7 12 12 C 1.46499 * 120.00078 * 184.86744 * 10 8 7 13 13 C 1.52997 * 109.47170 * 89.99724 * 12 10 8 14 14 O 1.42904 * 109.46833 * 65.00169 * 13 12 10 15 15 C 1.42903 * 113.99772 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47001 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47038 * 65.00349 * 16 15 14 18 18 C 1.36936 * 119.99948 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00172 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46826 * 59.99983 * 22 20 18 24 24 H 1.48499 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47334 * 300.00059 * 22 20 18 26 26 C 1.37949 * 119.91848 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46910 * 269.97687 * 1 2 3 28 28 H 1.09005 * 109.46799 * 29.97693 * 1 2 3 29 29 H 1.08997 * 109.46944 * 149.97266 * 1 2 3 30 30 H 1.07993 * 119.86163 * 359.97438 * 3 2 1 31 31 H 1.08010 * 120.07779 * 180.25536 * 6 4 3 32 32 H 1.09003 * 109.46918 * 85.38367 * 11 10 8 33 33 H 1.08993 * 109.47255 * 205.38058 * 11 10 8 34 34 H 1.08998 * 109.47422 * 325.38384 * 11 10 8 35 35 H 1.08999 * 109.47299 * 210.00222 * 12 10 8 36 36 H 1.09005 * 109.46705 * 329.99899 * 12 10 8 37 37 H 1.09004 * 109.47087 * 185.00005 * 13 12 10 38 38 H 1.09000 * 109.47446 * 304.99891 * 13 12 10 39 39 H 1.09003 * 109.47404 * 300.00186 * 15 14 13 40 40 H 1.09005 * 109.47278 * 59.99812 * 15 14 13 41 41 H 1.09000 * 109.46655 * 184.99677 * 16 15 14 42 42 H 1.08993 * 109.46987 * 304.99828 * 16 15 14 43 43 H 0.97002 * 120.00371 * 359.97438 * 17 16 15 44 44 H 0.96996 * 120.01026 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.05939 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4387 2.7175 0.0012 6 6 4.2820 0.0176 0.0002 7 6 3.5910 -1.1947 -0.0001 8 6 4.3342 -2.4728 -0.0010 9 8 3.9336 -3.4093 0.6623 10 7 5.4559 -2.5996 -0.7374 11 6 5.9978 -1.4412 -1.4520 12 6 6.1332 -3.8958 -0.8232 13 6 5.5729 -4.6865 -2.0071 14 8 5.8931 -4.0112 -3.2252 15 6 5.4133 -4.6706 -4.3987 16 6 5.8120 -3.8638 -5.6360 17 7 7.2713 -3.8565 -5.7648 18 6 7.8635 -3.1915 -6.8051 19 1 7.2547 -2.6727 -7.5309 20 6 9.2462 -3.1841 -6.9269 21 7 9.9882 -3.8158 -6.0423 22 14 10.0541 -2.2774 -8.3464 23 1 9.6916 -0.8386 -8.2850 24 1 11.5290 -2.4204 -8.2498 25 1 9.5838 -2.8519 -9.6324 26 6 2.1951 -1.1957 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6536 2.1324 -0.0004 31 1 5.3621 0.0251 0.0048 32 1 6.6357 -0.8661 -0.7808 33 1 6.5831 -1.7823 -2.3059 34 1 5.1780 -0.8134 -1.8009 35 1 7.2024 -3.7384 -0.9648 36 1 5.9669 -4.4543 0.0980 37 1 6.0123 -5.6840 -2.0184 38 1 4.4902 -4.7675 -1.9103 39 1 5.8497 -5.6677 -4.4594 40 1 4.3273 -4.7516 -4.3517 41 1 5.3713 -4.3181 -6.5234 42 1 5.4511 -2.8404 -5.5343 43 1 7.8181 -4.3221 -5.1128 44 1 10.9544 -3.8104 -6.1271 45 1 1.6548 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333238002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:57 Heat of formation + Delta-G solvation = -44.242909 kcal Electronic energy + Delta-G solvation = -26950.616811 eV Core-core repulsion = 22994.779011 eV Total energy + Delta-G solvation = -3955.837800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73253 -39.00777 -37.70867 -36.80145 -35.73455 -34.42278 -33.33465 -31.61819 -31.26251 -29.86267 -27.77694 -27.30592 -26.65370 -24.45127 -23.49624 -22.41796 -22.12154 -21.13126 -19.59575 -17.40607 -17.15803 -17.03591 -16.61898 -16.27992 -15.83043 -15.81136 -15.25588 -14.98500 -14.50446 -14.33958 -13.93126 -13.80274 -13.78962 -13.17536 -13.13922 -13.02437 -12.92231 -12.78653 -12.64495 -12.34142 -12.02678 -11.81521 -11.76144 -11.62150 -11.54748 -11.33490 -11.28698 -10.90361 -10.77636 -10.51092 -10.07889 -10.02363 -9.69049 -9.25212 -9.23449 -9.02867 -8.85817 -8.73234 -6.87524 -5.72309 -3.00447 0.50654 0.78067 1.75115 2.47384 2.82738 3.31232 3.45911 3.50136 3.51241 3.99356 4.15165 4.29302 4.60455 4.62484 4.76472 4.80942 4.85469 5.09558 5.13063 5.21518 5.24516 5.28216 5.34556 5.45012 5.46417 5.54112 5.57625 5.60577 5.64071 5.70315 5.73312 5.82085 5.86281 5.93203 6.01268 6.02095 6.29133 6.35648 6.41493 6.61288 6.75712 7.21779 7.57929 7.71940 7.95528 8.46343 9.57822 10.16336 10.52464 11.50442 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.002683 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.246320 B =10434.540592 C =11663.089236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.092 4.092 4 C -0.038 4.038 5 Cl -0.063 7.063 6 C -0.090 4.090 7 C -0.108 4.108 8 C 0.559 3.441 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.070 3.930 12 C 0.118 3.882 13 C 0.045 3.955 14 O -0.370 6.370 15 C 0.059 3.941 16 C 0.155 3.845 17 N -0.727 5.727 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.063 4.063 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.497 7.968 16.151 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.111 4.111 4 C -0.064 4.064 5 Cl -0.034 7.034 6 C -0.109 4.109 7 C -0.111 4.111 8 C 0.347 3.653 9 O -0.417 6.417 10 N -0.326 5.326 11 C -0.073 4.073 12 C -0.004 4.004 13 C -0.033 4.033 14 O -0.289 6.289 15 C -0.018 4.018 16 C 0.027 3.973 17 N -0.372 5.372 18 C -0.370 4.370 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.082 4.082 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.464 7.866 16.333 25.173 hybrid contribution 0.721 0.310 -0.694 1.047 sum -16.744 8.176 15.640 24.327 Atomic orbital electron populations 1.20816 0.89888 1.03459 1.02891 1.19813 0.96746 0.91926 0.99598 1.21107 0.91938 0.98837 0.99228 1.20773 0.92551 0.87345 1.05767 1.98392 1.77117 1.30985 1.96930 1.21587 1.01404 0.89884 0.98048 1.19809 0.94242 0.92824 1.04236 1.18248 0.80451 0.87200 0.79424 1.90774 1.67773 1.40683 1.42473 1.47665 1.25563 1.11535 1.47853 1.22264 0.99662 0.87774 0.97577 1.21629 0.97644 0.83428 0.97727 1.22855 0.98991 0.95760 0.85721 1.88001 1.78625 1.49367 1.12955 1.22779 0.96570 0.96462 0.85976 1.20679 0.87567 0.96981 0.92035 1.42275 0.99551 1.63663 1.31664 1.19188 0.89909 1.25141 1.02768 0.91352 1.24722 0.96172 1.01180 0.98896 1.69653 1.04446 1.47370 1.36672 0.86281 0.78380 0.79542 0.82060 1.21295 1.21720 1.21346 1.21166 0.92317 0.98565 0.96138 0.90616 0.91022 0.90894 0.84552 0.83448 0.92504 0.88388 0.90843 0.88812 0.88393 0.92395 0.93644 0.93377 0.94043 0.95123 0.95701 0.77934 0.93547 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.67 5.87 -104.68 -0.61 -1.29 16 3 C -0.09 -0.77 9.47 -39.46 -0.37 -1.15 16 4 C -0.04 -0.36 6.31 -39.55 -0.25 -0.61 16 5 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 6 C -0.09 -0.93 7.34 -39.15 -0.29 -1.22 16 7 C -0.11 -1.24 5.24 -104.97 -0.55 -1.79 16 8 C 0.56 7.56 7.35 -12.33 -0.09 7.47 16 9 O -0.54 -8.65 16.47 5.32 0.09 -8.56 16 10 N -0.59 -7.64 2.84 -182.70 -0.52 -8.16 16 11 C 0.07 0.83 8.66 59.85 0.52 1.34 16 12 C 0.12 1.49 5.83 -4.04 -0.02 1.47 16 13 C 0.04 0.62 6.28 37.16 0.23 0.85 16 14 O -0.37 -6.33 9.20 -35.23 -0.32 -6.66 16 15 C 0.06 1.00 6.07 37.16 0.23 1.22 16 16 C 0.16 3.19 6.65 -4.04 -0.03 3.16 16 17 N -0.73 -18.75 5.55 -59.91 -0.33 -19.08 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C -0.06 -0.64 9.28 -39.18 -0.36 -1.01 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.15 1.40 5.30 -52.48 -0.28 1.12 16 32 H 0.06 0.56 6.88 -51.93 -0.36 0.20 16 33 H 0.10 1.40 7.21 -51.93 -0.37 1.02 16 34 H 0.07 0.84 5.82 -51.93 -0.30 0.53 16 35 H 0.09 1.15 8.07 -51.93 -0.42 0.74 16 36 H 0.10 1.17 7.36 -51.93 -0.38 0.79 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.39 10.56 7.67 -40.82 -0.31 10.25 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.14 1.33 8.05 -52.49 -0.42 0.91 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -33.15 390.51 -9.11 -42.26 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.62 Total: 5.77 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.49 Total: 0.78 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.13 Total: -54.87 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.24 Total: -15.22 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.15 -9.11 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333238002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.987 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds