Wall clock time and date at job start Wed Apr 1 2020 00:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 119.91939 * 2 1 4 4 C 1.38450 * 120.27668 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.94172 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.11674 * 0.04054 * 4 3 2 7 7 C 1.39541 * 119.84204 * 359.97438 * 6 4 3 8 8 C 1.47853 * 120.13690 * 179.97438 * 7 6 4 9 9 O 1.21550 * 119.99894 * 140.91905 * 8 7 6 10 10 N 1.34774 * 120.00150 * 320.91452 * 8 7 6 11 11 C 1.46500 * 120.00015 * 4.86374 * 10 8 7 12 12 C 1.46499 * 120.00078 * 184.86744 * 10 8 7 13 13 C 1.52997 * 109.47170 * 89.99724 * 12 10 8 14 14 O 1.42904 * 109.46833 * 65.00169 * 13 12 10 15 15 C 1.42903 * 113.99772 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47001 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47038 * 65.00349 * 16 15 14 18 18 C 1.36936 * 119.99948 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99890 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00172 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46826 * 59.99983 * 22 20 18 24 24 H 1.48499 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47334 * 300.00059 * 22 20 18 26 26 C 1.37949 * 119.91848 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46910 * 269.97687 * 1 2 3 28 28 H 1.09005 * 109.46799 * 29.97693 * 1 2 3 29 29 H 1.08997 * 109.46944 * 149.97266 * 1 2 3 30 30 H 1.07993 * 119.86163 * 359.97438 * 3 2 1 31 31 H 1.08010 * 120.07779 * 180.25536 * 6 4 3 32 32 H 1.09003 * 109.46918 * 85.38367 * 11 10 8 33 33 H 1.08993 * 109.47255 * 205.38058 * 11 10 8 34 34 H 1.08998 * 109.47422 * 325.38384 * 11 10 8 35 35 H 1.08999 * 109.47299 * 210.00222 * 12 10 8 36 36 H 1.09005 * 109.46705 * 329.99899 * 12 10 8 37 37 H 1.09004 * 109.47087 * 185.00005 * 13 12 10 38 38 H 1.09000 * 109.47446 * 304.99891 * 13 12 10 39 39 H 1.09003 * 109.47404 * 300.00186 * 15 14 13 40 40 H 1.09005 * 109.47278 * 59.99812 * 15 14 13 41 41 H 1.09000 * 109.46655 * 184.99677 * 16 15 14 42 42 H 1.08993 * 109.46987 * 304.99828 * 16 15 14 43 43 H 0.97002 * 120.00371 * 359.97438 * 17 16 15 44 44 H 0.96996 * 120.01026 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.05939 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2078 0.0005 5 17 4.4387 2.7175 0.0012 6 6 4.2820 0.0176 0.0002 7 6 3.5910 -1.1947 -0.0001 8 6 4.3342 -2.4728 -0.0010 9 8 3.9336 -3.4093 0.6623 10 7 5.4559 -2.5996 -0.7374 11 6 5.9978 -1.4412 -1.4520 12 6 6.1332 -3.8958 -0.8232 13 6 5.5729 -4.6865 -2.0071 14 8 5.8931 -4.0112 -3.2252 15 6 5.4133 -4.6706 -4.3987 16 6 5.8120 -3.8638 -5.6360 17 7 7.2713 -3.8565 -5.7648 18 6 7.8635 -3.1915 -6.8051 19 1 7.2547 -2.6727 -7.5309 20 6 9.2462 -3.1841 -6.9269 21 7 9.9882 -3.8158 -6.0423 22 14 10.0541 -2.2774 -8.3464 23 1 9.6916 -0.8386 -8.2850 24 1 11.5290 -2.4204 -8.2498 25 1 9.5838 -2.8519 -9.6324 26 6 2.1951 -1.1957 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6536 2.1324 -0.0004 31 1 5.3621 0.0251 0.0048 32 1 6.6357 -0.8661 -0.7808 33 1 6.5831 -1.7823 -2.3059 34 1 5.1780 -0.8134 -1.8009 35 1 7.2024 -3.7384 -0.9648 36 1 5.9669 -4.4543 0.0980 37 1 6.0123 -5.6840 -2.0184 38 1 4.4902 -4.7675 -1.9103 39 1 5.8497 -5.6677 -4.4594 40 1 4.3273 -4.7516 -4.3517 41 1 5.3713 -4.3181 -6.5234 42 1 5.4511 -2.8404 -5.5343 43 1 7.8181 -4.3221 -5.1128 44 1 10.9544 -3.8104 -6.1271 45 1 1.6548 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333238002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:56 Heat of formation + Delta-G solvation = -64.091855 kcal Electronic energy + Delta-G solvation = -26951.477526 eV Core-core repulsion = 22994.779011 eV Total energy + Delta-G solvation = -3956.698514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.65319 -39.88283 -38.98565 -37.52989 -36.92369 -36.19899 -34.12404 -33.35049 -32.19741 -31.04525 -29.32649 -28.09536 -27.59759 -25.59346 -25.29571 -23.35451 -22.88779 -22.76034 -20.54665 -19.23414 -18.37376 -17.96139 -17.52847 -17.41501 -17.03435 -16.83959 -16.46073 -16.10970 -15.88278 -15.58114 -15.09694 -14.95914 -14.64938 -14.56059 -14.52679 -14.19947 -13.91699 -13.73640 -13.41022 -13.27643 -13.19592 -12.97653 -12.78641 -12.70853 -12.67400 -12.58620 -12.46684 -12.25383 -12.15115 -12.02091 -11.90680 -11.69233 -11.09798 -10.94207 -10.52011 -10.01361 -9.79738 -9.70966 -8.96859 -7.91442 -5.20051 -0.27475 0.05358 1.01812 1.48723 1.51219 1.51850 1.57902 1.87017 2.51013 2.58332 2.76061 3.26883 3.42127 3.63347 3.91168 3.95867 4.01404 4.03452 4.08786 4.15067 4.23017 4.25600 4.30770 4.43401 4.46071 4.50020 4.51711 4.62618 4.65442 4.75347 4.79886 4.83504 4.93100 4.99674 5.01599 5.09848 5.13851 5.17088 5.35077 5.39075 5.50444 5.63411 6.17873 6.29060 6.34686 6.92128 7.36691 8.12399 8.37166 9.31844 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.002683 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.246320 B =10434.540592 C =11663.089236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 C -0.088 4.088 4 C -0.044 4.044 5 Cl -0.061 7.061 6 C -0.095 4.095 7 C -0.126 4.126 8 C 0.558 3.442 9 O -0.570 6.570 10 N -0.596 5.596 11 C 0.076 3.924 12 C 0.118 3.882 13 C 0.047 3.953 14 O -0.391 6.391 15 C 0.067 3.933 16 C 0.152 3.848 17 N -0.739 5.739 18 C -0.246 4.246 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.278 1.278 26 C -0.073 4.073 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 9.255 15.959 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.106 4.106 4 C -0.071 4.071 5 Cl -0.032 7.032 6 C -0.114 4.114 7 C -0.129 4.129 8 C 0.347 3.653 9 O -0.451 6.451 10 N -0.326 5.326 11 C -0.066 4.066 12 C -0.005 4.005 13 C -0.031 4.031 14 O -0.311 6.311 15 C -0.010 4.010 16 C 0.026 3.974 17 N -0.382 5.382 18 C -0.378 4.378 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.092 4.092 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.053 9.169 16.123 26.590 hybrid contribution 1.104 -0.063 -0.598 1.257 sum -17.950 9.106 15.525 25.419 Atomic orbital electron populations 1.20899 0.87714 1.04451 1.03918 1.20108 0.98228 0.91110 0.98162 1.21427 0.91565 0.99858 0.97777 1.20879 0.93160 0.87157 1.05912 1.98393 1.77210 1.30653 1.96929 1.21583 1.01612 0.89850 0.98327 1.19731 0.94776 0.92188 1.06243 1.18565 0.80283 0.87632 0.78788 1.90744 1.68560 1.41966 1.43858 1.47743 1.25510 1.11756 1.47586 1.22238 0.99742 0.87589 0.97071 1.21647 0.97661 0.83589 0.97579 1.22951 0.99140 0.96284 0.84712 1.87974 1.79085 1.50176 1.13841 1.22645 0.98179 0.95439 0.84721 1.20842 0.84719 0.97508 0.94370 1.42464 1.01648 1.63292 1.30846 1.19605 0.90411 1.24598 1.03202 0.90734 1.25551 0.96867 1.02611 1.01656 1.69815 1.04281 1.49146 1.38625 0.85222 0.76849 0.78567 0.79178 1.20398 1.22170 1.20392 1.21309 0.91948 0.99469 0.96504 0.89454 0.89440 0.90541 0.82195 0.83192 0.90469 0.90887 0.90359 0.88695 0.87688 0.91225 0.93597 0.93354 0.91076 0.94027 0.96019 0.79235 0.94061 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.08 -1.12 5.87 -19.90 -0.12 -1.24 16 3 C -0.09 -1.28 9.47 22.35 0.21 -1.07 16 4 C -0.04 -0.79 6.31 22.29 0.14 -0.65 16 5 Cl -0.06 -1.03 28.95 -2.72 -0.08 -1.11 16 6 C -0.09 -1.89 7.34 22.55 0.17 -1.72 16 7 C -0.13 -2.87 5.24 -20.09 -0.11 -2.98 16 8 C 0.56 15.18 7.35 86.79 0.64 15.82 16 9 O -0.57 -18.54 16.47 -3.87 -0.06 -18.60 16 10 N -0.60 -15.33 2.84 -850.21 -2.41 -17.74 16 11 C 0.08 1.80 8.66 127.77 1.11 2.91 16 12 C 0.12 2.98 5.83 86.38 0.50 3.49 16 13 C 0.05 1.27 6.28 71.98 0.45 1.72 16 14 O -0.39 -13.27 9.20 -148.98 -1.37 -14.64 16 15 C 0.07 2.19 6.07 71.98 0.44 2.63 16 16 C 0.15 6.15 6.65 86.38 0.57 6.72 16 17 N -0.74 -38.27 5.55 -343.46 -1.91 -40.17 16 18 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 22 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.07 -1.45 9.28 22.53 0.21 -1.24 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 0.51 8.08 -2.38 -0.02 0.49 16 29 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.15 2.77 5.30 -2.91 -0.02 2.75 16 32 H 0.08 1.49 6.88 -2.39 -0.02 1.48 16 33 H 0.07 2.13 7.21 -2.39 -0.02 2.11 16 34 H 0.08 1.77 5.82 -2.39 -0.01 1.76 16 35 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 36 H 0.11 2.52 7.36 -2.38 -0.02 2.50 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.38 20.83 7.67 -92.71 -0.71 20.12 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.14 2.62 8.05 -2.91 -0.02 2.59 16 Total: -1.00 -70.58 390.51 3.01 -67.57 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.29 Total: 28.54 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.23 Total: 7.22 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -4.03 Total: -117.22 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.43 Total: -33.24 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -70.58 3.01 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333238002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.479 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds