Wall clock time and date at job start Tue Mar 31 2020 23:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47221 * 299.99803 * 3 2 1 6 6 H 1.48501 * 109.47235 * 60.00429 * 3 2 1 7 7 C 1.38808 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99513 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99802 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99852 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99895 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.88879 * 37.42563 * 14 13 11 16 16 C 1.55156 * 111.00653 * 273.55183 * 14 13 11 17 17 C 1.54333 * 102.94270 * 206.42419 * 16 14 13 18 18 N 1.47014 * 107.27029 * 22.18827 * 17 16 14 19 19 C 1.34773 * 125.65032 * 181.02680 * 18 17 16 20 20 O 1.21282 * 120.00315 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99814 * 0.02562 * 19 18 17 22 22 C 1.53001 * 120.25094 * 251.19009 * 21 19 18 23 23 C 1.52997 * 60.65568 * 247.86298 * 22 21 19 24 24 H 1.09002 * 119.80769 * 112.30855 * 23 22 21 25 25 C 1.54475 * 118.53997 * 269.86620 * 23 22 21 26 26 O 1.44998 * 104.52442 * 38.07528 * 25 23 22 27 27 C 1.44423 * 104.98186 * 41.26697 * 26 25 23 28 28 C 1.47425 * 108.70689 * 1.29053 * 18 17 16 29 29 H 0.96995 * 120.00164 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47049 * 60.00157 * 10 9 7 31 31 H 1.08995 * 109.47619 * 300.00141 * 10 9 7 32 32 H 0.96995 * 120.00214 * 0.02562 * 13 11 10 33 33 H 1.09000 * 110.72512 * 88.05769 * 16 14 13 34 34 H 1.09006 * 110.86941 * 324.85229 * 16 14 13 35 35 H 1.09007 * 109.87694 * 262.77204 * 17 16 14 36 36 H 1.08992 * 110.01329 * 141.68103 * 17 16 14 37 37 H 1.09003 * 117.43401 * 140.18141 * 22 21 19 38 38 H 1.09001 * 117.43316 * 355.54507 * 22 21 19 39 39 H 1.09008 * 110.37260 * 157.70615 * 25 23 22 40 40 H 1.08997 * 110.37675 * 280.04126 * 25 23 22 41 41 H 1.08996 * 110.37853 * 200.20795 * 27 26 25 42 42 H 1.09009 * 110.37452 * 77.86842 * 27 26 25 43 43 H 1.08996 * 110.37284 * 94.48065 * 28 18 17 44 44 H 1.09001 * 110.36830 * 216.80990 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3028 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8441 -6.3431 -0.0049 14 6 2.3304 -7.7151 -0.0050 15 1 1.4360 -7.7952 -0.6230 16 6 2.0528 -8.2051 1.4408 17 6 2.2032 -9.7365 1.3216 18 7 3.0297 -10.0028 0.1353 19 6 3.3755 -11.2219 -0.3235 20 8 4.0649 -11.3233 -1.3162 21 6 2.9057 -12.4593 0.3970 22 6 3.8969 -13.3114 1.1922 23 6 3.2693 -13.8830 -0.0807 24 1 3.8912 -14.0632 -0.9576 25 6 1.9446 -14.6687 0.0381 26 8 1.1881 -13.9552 1.0486 27 6 1.4076 -12.5570 0.7614 28 6 3.4229 -8.7154 -0.4658 29 1 -0.4850 0.8400 0.0004 30 1 3.1243 -3.7322 0.8872 31 1 3.1244 -3.7306 -0.8927 32 1 3.8008 -6.1835 -0.0051 33 1 1.0420 -7.9399 1.7506 34 1 2.7871 -7.7985 2.1363 35 1 1.2226 -10.1970 1.2012 36 1 2.6924 -10.1336 2.2110 37 1 3.5582 -13.7177 2.1453 38 1 4.9487 -13.0287 1.1503 39 1 1.4193 -14.6735 -0.9171 40 1 2.1368 -15.6885 0.3714 41 1 1.1906 -11.9504 1.6406 42 1 0.7910 -12.2410 -0.0802 43 1 4.4016 -8.4079 -0.0975 44 1 3.4326 -8.7915 -1.5531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350532681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:03 Heat of formation + Delta-G solvation = -70.500401 kcal Electronic energy + Delta-G solvation = -26530.704139 eV Core-core repulsion = 22575.771436 eV Total energy + Delta-G solvation = -3954.932704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46328 -40.04467 -39.01317 -37.54967 -34.86290 -34.27521 -32.46422 -31.31930 -30.01987 -29.34958 -28.01624 -26.37604 -25.53351 -24.71519 -22.22802 -21.64343 -21.19324 -20.51480 -19.42603 -18.00390 -17.80760 -17.06518 -16.52733 -16.38670 -16.28460 -15.79139 -15.35429 -15.16969 -14.97173 -14.83497 -14.29573 -14.02741 -13.90144 -13.69794 -13.39895 -13.30608 -13.10687 -12.85901 -12.68948 -12.55993 -12.37932 -12.05542 -11.85705 -11.67158 -11.17726 -11.12859 -11.09531 -11.05640 -10.79267 -10.73114 -10.20098 -10.17749 -9.84750 -9.52994 -9.14984 -9.10954 -9.03557 -8.28366 -6.54456 -6.25444 -3.96274 2.00970 2.29137 2.89813 2.95737 3.00325 3.19276 3.25364 3.28896 3.31985 3.62914 3.84710 3.96407 4.01500 4.16647 4.19369 4.34409 4.35929 4.59527 4.66835 4.81979 4.84111 4.87050 5.02624 5.07010 5.09009 5.10085 5.11245 5.20010 5.21395 5.22544 5.36425 5.46539 5.52692 5.57641 5.68883 5.79997 5.82230 5.88741 6.08209 6.09660 6.46741 7.00626 7.54998 7.57166 7.68991 8.31901 8.48320 9.20261 10.82032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.001779 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.455605 B =15733.667154 C =16095.761935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.730 5.730 14 C 0.138 3.862 15 H 0.105 0.895 16 C -0.146 4.146 17 C 0.097 3.903 18 N -0.611 5.611 19 C 0.580 3.420 20 O -0.534 6.534 21 C -0.214 4.214 22 C -0.101 4.101 23 C -0.161 4.161 24 H 0.134 0.866 25 C 0.069 3.931 26 O -0.367 6.367 27 C 0.081 3.919 28 C 0.102 3.898 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -27.951 3.446 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.387 6.387 13 N -0.385 5.385 14 C 0.031 3.969 15 H 0.123 0.877 16 C -0.185 4.185 17 C -0.026 4.026 18 N -0.345 5.345 19 C 0.368 3.632 20 O -0.411 6.411 21 C -0.218 4.218 22 C -0.138 4.138 23 C -0.180 4.180 24 H 0.152 0.848 25 C -0.008 4.008 26 O -0.285 6.285 27 C 0.004 3.996 28 C -0.021 4.021 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.238 -28.384 3.036 29.219 hybrid contribution 2.583 1.598 -0.179 3.043 sum 8.822 -26.786 2.857 28.345 Atomic orbital electron populations 1.70020 1.05956 1.27405 1.46864 1.24999 0.95035 0.99067 0.94496 0.86111 0.79581 0.81843 0.77925 1.19613 1.20551 1.20548 1.22905 0.94954 0.91595 1.58954 0.90834 1.85398 1.04780 0.96377 1.96730 1.23536 1.06715 0.95120 1.05078 1.20344 0.86480 0.86192 0.74747 1.90709 1.15299 1.85496 1.47153 1.45863 1.10114 1.04476 1.78019 1.21976 0.97169 0.81237 0.96499 0.87703 1.23122 1.04591 0.92857 0.97931 1.22284 0.95287 0.97023 0.87969 1.48198 1.52156 1.04989 1.29122 1.18633 0.79417 0.81887 0.83282 1.90734 1.38561 1.86085 1.25686 1.23053 0.97607 0.92300 1.08807 1.22916 0.97326 0.97658 0.95924 1.24207 1.00307 0.92489 1.01017 0.84834 1.23117 0.88215 0.96606 0.92841 1.89325 1.70893 1.16908 1.51391 1.23004 0.90367 0.84076 1.02114 1.22433 0.97646 0.82173 0.99841 0.92199 0.89096 0.89078 0.76490 0.88742 0.89814 0.90654 0.90633 0.87200 0.87208 0.90560 0.88060 0.87743 0.90881 0.90582 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 11 C 0.54 9.17 7.85 -10.98 -0.09 9.09 16 12 O -0.51 -10.80 15.61 5.56 0.09 -10.71 16 13 N -0.73 -8.56 5.23 -51.61 -0.27 -8.83 16 14 C 0.14 1.42 3.33 -65.66 -0.22 1.21 16 15 H 0.11 1.29 7.73 -51.93 -0.40 0.88 16 16 C -0.15 -1.26 6.64 -24.89 -0.17 -1.43 16 17 C 0.10 0.68 5.59 -3.06 -0.02 0.67 16 18 N -0.61 -5.53 3.32 -170.38 -0.57 -6.10 16 19 C 0.58 6.10 7.57 -10.99 -0.08 6.01 16 20 O -0.53 -7.50 17.10 5.56 0.10 -7.40 16 21 C -0.21 -1.70 2.49 -154.09 -0.38 -2.09 16 22 C -0.10 -0.65 9.72 -26.73 -0.26 -0.91 16 23 C -0.16 -1.12 6.92 -89.05 -0.62 -1.74 16 24 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 25 C 0.07 0.42 7.56 37.93 0.29 0.71 16 26 O -0.37 -3.00 11.34 -35.23 -0.40 -3.40 16 27 C 0.08 0.58 5.88 37.94 0.22 0.81 16 28 C 0.10 0.94 6.53 -2.41 -0.02 0.92 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 32 H 0.40 3.56 8.52 -40.82 -0.35 3.21 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.46 5.95 -51.93 -0.31 0.15 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.60 8.06 -51.93 -0.42 0.19 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.61 6.18 -51.93 -0.32 0.28 16 42 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.08 0.61 8.00 -51.93 -0.42 0.20 16 44 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -35.97 378.52 -9.17 -45.14 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.40 Total: 0.50 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.92 Total: -2.16 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.22 Total: -21.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.97 -9.17 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350532681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.358 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds