Wall clock time and date at job start Tue Mar 31 2020 23:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47221 * 299.99803 * 3 2 1 6 6 H 1.48501 * 109.47235 * 60.00429 * 3 2 1 7 7 C 1.38808 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99513 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47365 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99802 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99852 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99895 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.88879 * 37.42563 * 14 13 11 16 16 C 1.55156 * 111.00653 * 273.55183 * 14 13 11 17 17 C 1.54333 * 102.94270 * 206.42419 * 16 14 13 18 18 N 1.47014 * 107.27029 * 22.18827 * 17 16 14 19 19 C 1.34773 * 125.65032 * 181.02680 * 18 17 16 20 20 O 1.21282 * 120.00315 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99814 * 0.02562 * 19 18 17 22 22 C 1.53001 * 120.25094 * 251.19009 * 21 19 18 23 23 C 1.52997 * 60.65568 * 247.86298 * 22 21 19 24 24 H 1.09002 * 119.80769 * 112.30855 * 23 22 21 25 25 C 1.54475 * 118.53997 * 269.86620 * 23 22 21 26 26 O 1.44998 * 104.52442 * 38.07528 * 25 23 22 27 27 C 1.44423 * 104.98186 * 41.26697 * 26 25 23 28 28 C 1.47425 * 108.70689 * 1.29053 * 18 17 16 29 29 H 0.96995 * 120.00164 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47049 * 60.00157 * 10 9 7 31 31 H 1.08995 * 109.47619 * 300.00141 * 10 9 7 32 32 H 0.96995 * 120.00214 * 0.02562 * 13 11 10 33 33 H 1.09000 * 110.72512 * 88.05769 * 16 14 13 34 34 H 1.09006 * 110.86941 * 324.85229 * 16 14 13 35 35 H 1.09007 * 109.87694 * 262.77204 * 17 16 14 36 36 H 1.08992 * 110.01329 * 141.68103 * 17 16 14 37 37 H 1.09003 * 117.43401 * 140.18141 * 22 21 19 38 38 H 1.09001 * 117.43316 * 355.54507 * 22 21 19 39 39 H 1.09008 * 110.37260 * 157.70615 * 25 23 22 40 40 H 1.08997 * 110.37675 * 280.04126 * 25 23 22 41 41 H 1.08996 * 110.37853 * 200.20795 * 27 26 25 42 42 H 1.09009 * 110.37452 * 77.86842 * 27 26 25 43 43 H 1.08996 * 110.37284 * 94.48065 * 28 18 17 44 44 H 1.09001 * 110.36830 * 216.80990 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9873 -5.3028 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8441 -6.3431 -0.0049 14 6 2.3304 -7.7151 -0.0050 15 1 1.4360 -7.7952 -0.6230 16 6 2.0528 -8.2051 1.4408 17 6 2.2032 -9.7365 1.3216 18 7 3.0297 -10.0028 0.1353 19 6 3.3755 -11.2219 -0.3235 20 8 4.0649 -11.3233 -1.3162 21 6 2.9057 -12.4593 0.3970 22 6 3.8969 -13.3114 1.1922 23 6 3.2693 -13.8830 -0.0807 24 1 3.8912 -14.0632 -0.9576 25 6 1.9446 -14.6687 0.0381 26 8 1.1881 -13.9552 1.0486 27 6 1.4076 -12.5570 0.7614 28 6 3.4229 -8.7154 -0.4658 29 1 -0.4850 0.8400 0.0004 30 1 3.1243 -3.7322 0.8872 31 1 3.1244 -3.7306 -0.8927 32 1 3.8008 -6.1835 -0.0051 33 1 1.0420 -7.9399 1.7506 34 1 2.7871 -7.7985 2.1363 35 1 1.2226 -10.1970 1.2012 36 1 2.6924 -10.1336 2.2110 37 1 3.5582 -13.7177 2.1453 38 1 4.9487 -13.0287 1.1503 39 1 1.4193 -14.6735 -0.9171 40 1 2.1368 -15.6885 0.3714 41 1 1.1906 -11.9504 1.6406 42 1 0.7910 -12.2410 -0.0802 43 1 4.4016 -8.4079 -0.0975 44 1 3.4326 -8.7915 -1.5531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350532681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:02 Heat of formation + Delta-G solvation = -96.815790 kcal Electronic energy + Delta-G solvation = -26531.845260 eV Core-core repulsion = 22575.771436 eV Total energy + Delta-G solvation = -3956.073824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11129 -40.99922 -40.03764 -38.49054 -35.46477 -35.37106 -34.57920 -32.34198 -30.81237 -30.33519 -28.89581 -27.65149 -26.89738 -25.50403 -22.94977 -22.52087 -21.74133 -21.68670 -20.12067 -19.85086 -18.55565 -18.11120 -17.63080 -17.24861 -16.89843 -16.87622 -16.64254 -16.38918 -16.11222 -16.01266 -15.58950 -14.96601 -14.85105 -14.65425 -14.41934 -14.39556 -13.93411 -13.71739 -13.69605 -13.63886 -13.26386 -13.15357 -12.92552 -12.76947 -12.65314 -12.55985 -12.46882 -11.92432 -11.74016 -11.70466 -11.31273 -11.15566 -11.00936 -10.92067 -10.70535 -10.26294 -10.19280 -9.85254 -8.65397 -8.34686 -6.11927 1.21992 1.28319 1.41522 1.43782 1.54728 1.58644 1.67549 2.26052 2.29754 2.37638 2.78414 2.99820 3.16204 3.31713 3.40189 3.43542 3.49204 3.66370 3.80694 3.91959 3.94651 4.04618 4.14357 4.17322 4.32330 4.36409 4.48847 4.53408 4.56107 4.57268 4.63160 4.69480 4.72804 4.74853 4.77338 4.93934 5.02589 5.05235 5.09846 5.41740 5.43131 5.58002 6.20502 6.26080 6.45877 6.90409 7.07280 7.21016 8.74624 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.001779 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.455605 B =15733.667154 C =16095.761935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.559 6.559 13 N -0.704 5.704 14 C 0.136 3.864 15 H 0.083 0.917 16 C -0.139 4.139 17 C 0.101 3.899 18 N -0.609 5.609 19 C 0.577 3.423 20 O -0.577 6.577 21 C -0.225 4.225 22 C -0.086 4.086 23 C -0.163 4.163 24 H 0.128 0.872 25 C 0.068 3.932 26 O -0.380 6.380 27 C 0.083 3.917 28 C 0.108 3.892 29 H 0.271 0.729 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.419 0.581 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.317 -28.814 4.625 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.436 6.436 13 N -0.358 5.358 14 C 0.030 3.970 15 H 0.101 0.899 16 C -0.178 4.178 17 C -0.021 4.021 18 N -0.342 5.342 19 C 0.367 3.633 20 O -0.457 6.457 21 C -0.228 4.228 22 C -0.123 4.123 23 C -0.182 4.182 24 H 0.146 0.854 25 C -0.008 4.008 26 O -0.299 6.299 27 C 0.007 3.993 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.257 0.743 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.418 -29.278 4.236 30.757 hybrid contribution 1.962 1.737 -0.574 2.683 sum 10.380 -27.540 3.662 29.658 Atomic orbital electron populations 1.70179 1.07933 1.28523 1.48109 1.26109 0.95951 1.03283 0.93816 0.84922 0.78645 0.76464 0.78025 1.18034 1.20092 1.19939 1.23245 0.95380 0.92060 1.58658 0.89876 1.85560 1.10454 0.99164 1.97047 1.23377 1.03622 0.94219 1.06977 1.19999 0.86167 0.86443 0.74727 1.90703 1.17255 1.85947 1.49702 1.45525 1.10453 1.04014 1.75803 1.21995 0.96871 0.80361 0.97792 0.89861 1.23059 1.04315 0.93986 0.96486 1.22394 0.95896 0.95848 0.88001 1.48251 1.51896 1.04614 1.29424 1.19040 0.78773 0.82727 0.82805 1.90710 1.40693 1.86725 1.27586 1.23027 0.98383 0.91562 1.09833 1.22990 0.97056 0.96175 0.96115 1.24292 1.00708 0.91904 1.01320 0.85443 1.23247 0.87518 0.97237 0.92836 1.89311 1.71257 1.17305 1.52002 1.23023 0.89656 0.84083 1.02581 1.22345 0.97878 0.82026 0.99258 0.92020 0.86897 0.87247 0.74348 0.89837 0.88649 0.89597 0.88220 0.85832 0.86999 0.90256 0.86155 0.86262 0.91467 0.88702 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -30.51 9.50 67.96 0.65 -29.86 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 C 0.54 18.16 7.85 87.66 0.69 18.85 16 12 O -0.56 -23.97 15.61 -3.03 -0.05 -24.01 16 13 N -0.70 -15.31 5.23 -435.59 -2.28 -17.59 16 14 C 0.14 2.66 3.33 46.46 0.15 2.81 16 15 H 0.08 2.06 7.73 -2.38 -0.02 2.04 16 16 C -0.14 -2.15 6.64 31.79 0.21 -1.94 16 17 C 0.10 1.18 5.59 86.73 0.49 1.66 16 18 N -0.61 -10.08 3.32 -811.35 -2.70 -12.78 16 19 C 0.58 11.56 7.57 87.66 0.66 12.23 16 20 O -0.58 -16.13 17.10 -3.04 -0.05 -16.18 16 21 C -0.22 -3.23 2.49 -51.91 -0.13 -3.36 16 22 C -0.09 -0.92 9.72 30.59 0.30 -0.62 16 23 C -0.16 -2.06 6.92 -9.78 -0.07 -2.13 16 24 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 25 C 0.07 0.72 7.56 72.48 0.55 1.27 16 26 O -0.38 -5.51 11.34 -148.98 -1.69 -7.20 16 27 C 0.08 1.06 5.88 72.49 0.43 1.49 16 28 C 0.11 1.83 6.53 86.93 0.57 2.39 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 32 H 0.42 6.25 8.52 -92.71 -0.79 5.46 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.09 0.86 5.95 -2.38 -0.01 0.85 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.12 1.00 8.06 -2.39 -0.02 0.98 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 40 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.12 1.09 6.18 -2.39 -0.01 1.08 16 42 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.09 1.28 8.00 -2.39 -0.02 1.26 16 44 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -80.53 378.52 0.02 -80.51 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.24 Total: 16.81 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.40 Total: -0.42 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -4.69 Total: -85.33 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.79 Total: -47.40 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -80.53 0.02 -80.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350532681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.309 kcal (2) G-P(sol) polarization free energy of solvation -80.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds