Wall clock time and date at job start Tue Mar 31 2020 23:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48495 * 109.47164 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46792 * 120.00030 * 3 2 1 6 6 H 1.48498 * 109.47277 * 239.99876 * 3 2 1 7 7 C 1.40031 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99960 * 4.83118 * 7 2 1 9 9 C 1.41338 * 119.99998 * 184.83699 * 7 2 1 10 10 C 1.40617 * 119.78729 * 184.84568 * 9 7 2 11 11 C 1.38302 * 119.12406 * 179.76665 * 10 9 7 12 12 C 1.38694 * 118.67518 * 0.49609 * 11 10 9 13 13 C 1.39633 * 119.49102 * 359.74585 * 12 11 10 14 14 N 1.39278 * 119.57243 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99922 * 18.85719 * 14 13 12 16 16 O 1.21274 * 119.99869 * 5.59910 * 15 14 13 17 17 C 1.50694 * 119.99935 * 185.59247 * 15 14 13 18 18 N 1.46506 * 109.47177 * 180.02562 * 17 15 14 19 19 C 1.34771 * 120.00056 * 180.02562 * 18 17 15 20 20 O 1.21594 * 119.99960 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99968 * 180.02562 * 19 18 17 22 22 C 1.39939 * 119.99697 * 185.20528 * 21 19 18 23 23 C 1.38870 * 120.06972 * 213.97207 * 22 21 19 24 24 C 1.38111 * 119.93515 * 179.76770 * 23 22 21 25 25 C 1.38287 * 120.06717 * 0.51137 * 24 23 22 26 26 C 1.38285 * 120.13876 * 359.74676 * 25 24 23 27 27 C 1.38115 * 120.06796 * 359.97438 * 26 25 24 28 28 N 1.31922 * 120.85600 * 359.97438 * 13 12 11 29 29 H 0.97003 * 120.00078 * 174.98417 * 1 2 3 30 30 H 1.07995 * 120.43562 * 0.02562 * 10 9 7 31 31 H 1.08005 * 120.66308 * 180.22508 * 11 10 9 32 32 H 1.07997 * 120.25488 * 179.76820 * 12 11 10 33 33 H 0.97001 * 119.99872 * 198.86793 * 14 13 12 34 34 H 1.08993 * 109.47465 * 300.00206 * 17 15 14 35 35 H 1.08994 * 109.47236 * 60.00574 * 17 15 14 36 36 H 0.96997 * 119.99791 * 0.02562 * 18 17 15 37 37 H 0.96998 * 119.99903 * 5.20179 * 21 19 18 38 38 H 1.08004 * 120.03075 * 0.02562 * 23 22 21 39 39 H 1.07993 * 119.97245 * 180.25840 * 24 23 22 40 40 H 1.07994 * 119.93590 * 179.71601 * 25 24 23 41 41 H 1.08003 * 119.96500 * 180.02562 * 26 25 24 42 42 H 1.08005 * 120.03042 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0952 1.6963 1.2126 6 1 3.0952 1.6964 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 1.4705 -2.1463 -0.0797 9 6 3.4172 -1.2149 0.1027 10 6 4.1233 -2.4266 -0.0009 11 6 5.5027 -2.4123 0.0973 12 6 6.1426 -1.1995 0.3056 13 6 5.3850 -0.0308 0.4050 14 7 6.0258 1.1881 0.6137 15 6 7.3406 1.3129 0.3451 16 8 7.9433 0.3967 -0.1728 17 6 8.0618 2.5908 0.6882 18 7 9.4697 2.4765 0.2994 19 6 10.3133 3.5057 0.5124 20 8 9.9060 4.5290 1.0276 21 7 11.6084 3.4008 0.1542 22 6 12.5076 4.4245 0.4731 23 6 13.5539 4.7252 -0.3892 24 6 14.4369 5.7393 -0.0740 25 6 14.2863 6.4480 1.1039 26 6 13.2487 6.1474 1.9672 27 6 12.3589 5.1383 1.6549 28 7 4.0702 -0.0660 0.3029 29 1 -0.4850 -0.8368 -0.0734 30 1 3.5956 -3.3554 -0.1591 31 1 6.0701 -3.3278 0.0177 32 1 7.2185 -1.1593 0.3899 33 1 5.5258 1.9472 0.9525 34 1 7.6036 3.4218 0.1521 35 1 7.9943 2.7692 1.7613 36 1 9.7947 1.6601 -0.1113 37 1 11.9171 2.6157 -0.3245 38 1 13.6744 4.1693 -1.3073 39 1 15.2483 5.9764 -0.7461 40 1 14.9808 7.2374 1.3504 41 1 13.1335 6.7030 2.8861 42 1 11.5490 4.9038 2.3298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362838706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:59 Heat of formation + Delta-G solvation = 1.720918 kcal Electronic energy + Delta-G solvation = -27341.305545 eV Core-core repulsion = 23286.353393 eV Total energy + Delta-G solvation = -4054.952152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.05261 -40.30836 -38.92948 -38.24017 -35.17561 -34.94908 -34.57151 -33.60955 -31.21935 -31.17949 -30.42622 -29.59434 -27.56382 -25.40483 -23.42666 -22.89658 -22.19836 -21.85709 -21.04580 -20.14654 -19.08953 -18.40482 -18.18832 -17.32917 -16.62282 -16.45349 -16.22982 -15.55451 -15.39734 -15.16110 -14.89511 -14.67342 -14.37111 -14.21301 -13.79069 -13.65469 -13.51102 -13.33912 -13.09052 -12.90301 -12.57563 -12.29706 -11.98538 -11.93859 -11.55374 -11.32243 -10.89796 -10.73550 -10.46884 -10.43040 -10.15567 -9.76680 -9.51716 -9.45536 -9.24386 -9.20054 -8.66115 -8.38776 -7.88661 -7.51912 -7.32450 -4.86425 1.02005 1.13931 1.98070 2.10269 2.54893 2.76943 2.86737 3.08433 3.49349 3.57981 3.58244 3.82471 3.91726 4.31191 4.47974 4.56545 4.61172 4.67937 4.88655 5.08495 5.09740 5.13683 5.25720 5.29889 5.44249 5.71146 5.73581 5.90776 5.95929 5.97369 6.05076 6.22747 6.29822 6.33067 6.40533 6.43162 6.55263 6.76972 6.99053 7.05283 7.34766 7.41795 7.47699 7.54799 7.64732 7.98993 8.09760 8.15071 8.27374 8.55772 9.29772 9.92458 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024614 B = 0.002018 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.299982 B =13874.260078 C =14735.422441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.042 3.958 3 Si 1.157 2.843 4 H -0.331 1.331 5 H -0.282 1.282 6 H -0.294 1.294 7 C -0.473 4.473 8 H 0.084 0.916 9 C 0.272 3.728 10 C -0.274 4.274 11 C -0.035 4.035 12 C -0.312 4.312 13 C 0.385 3.615 14 N -0.648 5.648 15 C 0.512 3.488 16 O -0.513 6.513 17 C 0.121 3.879 18 N -0.727 5.727 19 C 0.708 3.292 20 O -0.572 6.572 21 N -0.686 5.686 22 C 0.169 3.831 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.140 4.140 26 C -0.100 4.100 27 C -0.120 4.120 28 N -0.598 5.598 29 H 0.284 0.716 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.411 0.589 37 H 0.409 0.591 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.325 9.132 1.431 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.180 4.180 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.505 4.505 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.296 4.296 11 C -0.059 4.059 12 C -0.337 4.337 13 C 0.155 3.845 14 N -0.293 5.293 15 C 0.298 3.702 16 O -0.388 6.388 17 C -0.007 4.007 18 N -0.386 5.386 19 C 0.409 3.591 20 O -0.449 6.449 21 N -0.334 5.334 22 C 0.074 3.926 23 C -0.170 4.170 24 C -0.120 4.120 25 C -0.159 4.159 26 C -0.119 4.119 27 C -0.141 4.141 28 N -0.323 5.323 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.156 0.844 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.248 0.752 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 23.522 11.611 1.678 26.285 hybrid contribution 0.383 -3.164 -0.502 3.227 sum 23.905 8.447 1.176 25.381 Atomic orbital electron populations 1.70646 1.08171 1.32886 1.30646 1.27815 0.95343 1.06239 0.88572 0.81817 0.70699 0.69567 0.78698 1.26441 1.21001 1.22216 1.20756 0.90344 0.96416 1.42987 0.89783 1.18270 0.93438 0.85906 0.87542 1.21624 0.93948 0.98427 1.15622 1.20924 0.94115 0.96422 0.94432 1.21465 1.00864 0.91153 1.20177 1.18048 0.88896 0.83680 0.93890 1.43140 1.09162 1.13456 1.63527 1.20380 0.82075 0.89287 0.78498 1.90630 1.66427 1.40343 1.41442 1.20910 0.80819 0.95944 1.03059 1.44697 1.08686 1.18119 1.67047 1.15723 0.80440 0.83560 0.79420 1.90974 1.76255 1.28907 1.48755 1.42561 1.07009 1.22518 1.61295 1.17502 0.90529 0.90800 0.93760 1.20879 0.97013 1.00078 0.99053 1.20921 0.98747 0.95236 0.97060 1.21137 0.98895 1.00724 0.95178 1.21066 0.94265 0.96954 0.99616 1.21209 1.00037 0.97218 0.95604 1.66002 1.06948 1.29650 1.29706 0.90497 0.87589 0.87533 0.84437 0.75187 0.87748 0.87629 0.75166 0.75533 0.85738 0.85742 0.86061 0.85739 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.41 13.65 55.55 0.76 -20.65 16 2 C 0.04 1.11 5.52 -17.34 -0.10 1.02 16 3 Si 1.16 27.25 25.62 -169.99 -4.35 22.90 16 4 H -0.33 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.28 -6.30 6.60 56.52 0.37 -5.93 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.47 -12.60 9.57 -37.73 -0.36 -12.96 16 8 H 0.08 2.23 8.05 -52.49 -0.42 1.81 16 9 C 0.27 6.95 6.40 -84.99 -0.54 6.41 16 10 C -0.27 -6.32 9.83 -38.66 -0.38 -6.70 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.31 -6.61 8.83 -38.89 -0.34 -6.95 16 13 C 0.39 8.36 7.51 -154.97 -1.16 7.20 16 14 N -0.65 -10.95 5.41 -11.40 -0.06 -11.01 16 15 C 0.51 7.41 7.74 -10.99 -0.09 7.32 16 16 O -0.51 -8.59 12.47 5.56 0.07 -8.52 16 17 C 0.12 1.31 6.16 -5.19 -0.03 1.28 16 18 N -0.73 -7.51 5.53 -66.42 -0.37 -7.88 16 19 C 0.71 8.07 8.30 -86.92 -0.72 7.35 16 20 O -0.57 -8.33 14.09 5.28 0.07 -8.25 16 21 N -0.69 -6.09 5.35 -14.22 -0.08 -6.17 16 22 C 0.17 1.65 6.26 -83.69 -0.52 1.12 16 23 C -0.15 -1.18 9.96 -39.39 -0.39 -1.58 16 24 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 25 C -0.14 -1.05 10.04 -39.55 -0.40 -1.45 16 26 C -0.10 -0.87 10.04 -39.61 -0.40 -1.26 16 27 C -0.12 -1.26 8.65 -39.39 -0.34 -1.60 16 28 N -0.60 -14.58 4.54 -10.25 -0.05 -14.63 16 29 H 0.28 7.24 8.72 -40.82 -0.36 6.89 16 30 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.11 1.89 8.06 -52.48 -0.42 1.46 16 32 H 0.14 2.78 5.33 -52.50 -0.28 2.50 16 33 H 0.41 6.05 8.83 -40.82 -0.36 5.69 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.41 3.88 7.46 -40.82 -0.30 3.58 16 37 H 0.41 2.40 8.84 -40.82 -0.36 2.04 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.14 1.59 6.48 -52.48 -0.34 1.25 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -32.54 360.80 -9.77 -42.31 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.63 Total: 9.54 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -6.58 Total: -3.07 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.21 Total: -60.34 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.14 Total: -16.78 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: -4.35 Total: 22.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.54 -9.77 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362838706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.034 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds