Wall clock time and date at job start Tue Mar 31 2020 23:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86808 * 119.99798 * 2 1 4 4 H 1.48497 * 109.46955 * 274.96763 * 3 2 1 5 5 H 1.48498 * 109.46835 * 34.96828 * 3 2 1 6 6 H 1.48503 * 109.46730 * 154.96991 * 3 2 1 7 7 C 1.39930 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00317 * 196.78821 * 7 2 1 9 9 C 1.41411 * 119.99725 * 16.77871 * 7 2 1 10 10 C 1.40771 * 120.20907 * 25.16610 * 9 7 2 11 11 C 1.37641 * 119.88294 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32332 * 359.97438 * 11 10 9 13 13 C 1.39246 * 120.42781 * 0.02562 * 12 11 10 14 14 N 1.39950 * 119.94603 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99682 * 145.78625 * 14 13 12 16 16 O 1.21584 * 119.99938 * 354.63615 * 15 14 13 17 17 N 1.34775 * 119.99951 * 174.91153 * 15 14 13 18 18 C 1.46501 * 120.00153 * 179.72437 * 17 15 14 19 19 C 1.50703 * 109.46981 * 179.97438 * 18 17 15 20 20 C 1.38631 * 120.32093 * 90.00265 * 19 18 17 21 21 C 1.38591 * 118.48559 * 179.97438 * 20 19 18 22 22 C 1.39306 * 119.06156 * 0.02562 * 21 20 19 23 23 C 1.48168 * 119.72762 * 179.97438 * 22 21 20 24 24 N 1.34767 * 120.00398 * 179.97438 * 23 22 21 25 25 O 1.21520 * 119.99665 * 359.97438 * 23 22 21 26 26 N 1.32726 * 120.55113 * 359.97438 * 22 21 20 27 27 C 1.31519 * 121.64203 * 359.70862 * 26 22 21 28 28 C 1.38274 * 120.10417 * 0.25520 * 13 12 11 29 29 H 0.97005 * 120.00120 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.06012 * 0.02562 * 10 9 7 31 31 H 1.08008 * 119.84150 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.78516 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00580 * 325.78716 * 14 13 12 34 34 H 0.97004 * 119.99987 * 359.72773 * 17 15 14 35 35 H 1.08997 * 109.46951 * 300.00175 * 18 17 15 36 36 H 1.09003 * 109.47067 * 59.99941 * 18 17 15 37 37 H 1.07999 * 120.75746 * 359.97438 * 20 19 18 38 38 H 1.08004 * 120.46939 * 179.97438 * 21 20 19 39 39 H 0.96997 * 120.00208 * 359.97438 * 24 23 22 40 40 H 0.96998 * 120.00307 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.54671 * 180.30867 * 27 26 22 42 42 H 1.08002 * 120.15749 * 179.71809 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3847 2.1071 -1.3948 5 1 1.4961 2.6201 0.8024 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2696 9 6 1.3461 -2.4102 -0.3546 10 6 0.2107 -2.3733 -1.1859 11 6 -0.4281 -3.5439 -1.5267 12 6 0.0412 -4.7594 -1.0561 13 6 1.1632 -4.8113 -0.2331 14 7 1.6283 -6.0446 0.2371 15 6 2.9502 -6.2462 0.4066 16 8 3.7445 -5.3934 0.0599 17 7 3.3917 -7.3952 0.9553 18 6 4.8288 -7.6168 1.1340 19 6 5.0543 -8.9673 1.7637 20 6 5.2176 -10.0915 0.9691 21 6 5.4233 -11.3143 1.5883 22 6 5.4580 -11.3709 2.9797 23 6 5.6763 -12.6705 3.6570 24 7 5.7114 -12.7316 5.0028 25 8 5.8237 -13.6814 2.9989 26 7 5.2971 -10.2703 3.7039 27 6 5.1066 -9.0965 3.1422 28 6 1.8151 -3.6456 0.1251 29 1 -0.4850 0.8401 0.0004 30 1 -0.1582 -1.4282 -1.5562 31 1 -1.2995 -3.5148 -2.1643 32 1 -0.4664 -5.6726 -1.3293 33 1 0.9994 -6.7545 0.4409 34 1 2.7580 -8.0756 1.2318 35 1 5.3254 -7.5801 0.1644 36 1 5.2382 -6.8415 1.7815 37 1 5.1853 -10.0162 -0.1077 38 1 5.5539 -12.2108 1.0003 39 1 5.5941 -11.9247 5.5282 40 1 5.8540 -13.5824 5.4462 41 1 4.9845 -8.2220 3.7641 42 1 2.6827 -3.6845 0.7672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365499916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:46 Heat of formation + Delta-G solvation = -34.501048 kcal Electronic energy + Delta-G solvation = -26931.388903 eV Core-core repulsion = 22874.866048 eV Total energy + Delta-G solvation = -4056.522855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.84784 -41.31656 -39.97112 -39.10865 -36.54690 -36.00919 -34.91834 -34.75371 -33.42853 -32.63798 -31.71088 -29.91142 -27.82927 -27.18868 -24.96009 -24.27711 -23.18377 -22.67365 -21.94841 -21.64193 -19.58892 -19.42502 -19.26240 -18.33719 -17.65307 -17.25078 -17.02642 -16.51669 -16.41450 -16.24046 -16.16088 -16.00946 -15.91993 -15.32524 -14.93628 -14.71820 -14.62642 -14.37624 -14.19878 -14.12078 -13.79464 -13.47849 -13.00359 -12.90362 -12.83833 -12.75234 -12.15603 -11.97888 -11.62987 -11.53528 -11.27334 -11.05762 -10.93481 -10.79188 -10.76675 -10.72327 -10.24634 -10.14465 -9.35529 -8.69431 -8.55202 -6.33406 -0.60606 0.13204 0.95919 1.06745 1.38141 1.46180 1.51750 1.52235 1.85218 2.21269 2.23271 2.30860 2.74174 2.77842 3.12033 3.37172 3.49477 3.74173 3.78408 3.83318 3.91207 4.10932 4.50059 4.51657 4.67611 4.68648 4.70208 4.91349 5.08507 5.09429 5.13886 5.16261 5.22851 5.34876 5.37921 5.45398 5.74602 5.75871 5.86385 6.09018 6.15125 6.20561 6.22704 6.40139 6.63838 6.72737 6.98031 7.04519 7.10683 7.17486 7.61628 8.36166 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.001827 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.648739 B =15320.298533 C =16000.603430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.088 3.912 10 C -0.199 4.199 11 C -0.091 4.091 12 C -0.252 4.252 13 C 0.177 3.823 14 N -0.670 5.670 15 C 0.698 3.302 16 O -0.615 6.615 17 N -0.723 5.723 18 C 0.184 3.816 19 C -0.123 4.123 20 C -0.052 4.052 21 C -0.115 4.115 22 C 0.062 3.938 23 C 0.574 3.426 24 N -0.816 5.816 25 O -0.575 6.575 26 N -0.463 5.463 27 C 0.119 3.881 28 C -0.234 4.234 29 H 0.288 0.712 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.421 0.579 40 H 0.415 0.585 41 H 0.183 0.817 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -20.866 7.533 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.085 3.915 10 C -0.219 4.219 11 C -0.110 4.110 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.398 3.602 16 O -0.494 6.494 17 N -0.380 5.380 18 C 0.060 3.940 19 C -0.126 4.126 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.075 4.075 23 C 0.357 3.643 24 N -0.379 5.379 25 O -0.454 6.454 26 N -0.174 5.174 27 C -0.042 4.042 28 C -0.256 4.256 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.184 0.816 38 H 0.172 0.828 39 H 0.253 0.747 40 H 0.247 0.753 41 H 0.200 0.800 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.656 -20.647 7.671 23.318 hybrid contribution -0.222 0.373 -0.161 0.463 sum 7.433 -20.274 7.510 22.862 Atomic orbital electron populations 1.69862 1.08690 1.30437 1.35900 1.26683 0.95587 1.04188 0.91286 0.85226 0.79000 0.76159 0.79488 1.18559 1.18722 1.18832 1.19734 0.97488 0.92642 1.43178 0.91880 1.17845 0.91939 0.92475 0.89250 1.21291 1.00136 0.97540 1.02923 1.20819 0.98886 0.92207 0.99114 1.20436 1.01795 0.97975 1.07084 1.17254 0.95297 0.83465 0.95671 1.42322 1.06002 1.14749 1.68734 1.16104 0.82437 0.82815 0.78822 1.90978 1.55400 1.45976 1.57008 1.44864 1.08455 1.18110 1.66615 1.19969 0.80205 0.92552 1.01270 1.20991 1.00938 0.95413 0.95232 1.21853 0.93275 0.90405 1.02252 1.22255 0.97041 0.99981 0.94279 1.21186 1.01474 0.92731 0.92150 1.18031 0.75818 0.86888 0.83533 1.43546 1.72807 1.15705 1.05889 1.90826 1.52014 1.36359 1.66196 1.67595 1.10811 0.98537 1.40476 1.23090 0.93460 0.95185 0.92438 1.20940 1.04615 0.92070 1.07993 0.90088 0.87933 0.86030 0.85112 0.74490 0.75184 0.90242 0.90305 0.81629 0.82840 0.74715 0.75255 0.79996 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 10.94 21.82 0.24 -43.58 16 2 C 0.04 1.95 5.16 85.25 0.44 2.39 16 3 Si 0.98 39.92 29.59 68.60 2.03 41.95 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.50 -28.89 9.05 23.46 0.21 -28.67 16 8 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 9 C 0.09 5.02 5.57 -21.31 -0.12 4.90 16 10 C -0.20 -10.65 8.69 22.75 0.20 -10.45 16 11 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 12 C -0.25 -10.31 9.97 22.58 0.23 -10.09 16 13 C 0.18 7.75 6.25 38.10 0.24 7.99 16 14 N -0.67 -21.67 5.34 -317.33 -1.70 -23.36 16 15 C 0.70 22.83 8.29 179.05 1.48 24.31 16 16 O -0.61 -27.11 14.11 -3.98 -0.06 -27.16 16 17 N -0.72 -14.49 5.55 -482.29 -2.68 -17.17 16 18 C 0.18 3.15 5.82 85.63 0.50 3.65 16 19 C -0.12 -1.55 5.27 -19.69 -0.10 -1.65 16 20 C -0.05 -0.59 9.85 22.45 0.22 -0.37 16 21 C -0.11 -1.61 9.63 22.61 0.22 -1.39 16 22 C 0.06 1.00 6.75 41.91 0.28 1.28 16 23 C 0.57 10.00 8.08 86.88 0.70 10.70 16 24 N -0.82 -8.26 8.86 -175.39 -1.55 -9.82 16 25 O -0.57 -13.88 17.16 -3.78 -0.06 -13.95 16 26 N -0.46 -6.74 9.54 -184.91 -1.76 -8.51 16 27 C 0.12 1.51 10.86 84.82 0.92 2.43 16 28 C -0.23 -12.44 8.39 22.85 0.19 -12.25 16 29 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 30 H 0.10 5.71 6.17 -2.91 -0.02 5.69 16 31 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.42 9.48 8.84 -92.71 -0.82 8.66 16 34 H 0.41 5.58 8.48 -92.71 -0.79 4.79 16 35 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.08 1.48 8.09 -2.39 -0.02 1.47 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.15 2.05 7.64 -2.91 -0.02 2.03 16 39 H 0.42 3.03 8.16 -92.71 -0.76 2.27 16 40 H 0.41 2.76 8.93 -92.71 -0.83 1.93 16 41 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.09 4.83 6.49 -2.91 -0.02 4.81 16 Total: -1.00 -78.23 369.38 -1.77 -79.99 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -2.05 Total: 32.74 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.83 Total: -11.13 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -7.45 Total: -102.44 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.12 Total: -41.11 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -78.23 -1.77 -79.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365499916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.494 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds