Wall clock time and date at job start Tue Mar 31 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.46845 * 269.99273 * 3 2 1 5 5 H 1.48498 * 109.47527 * 29.99887 * 3 2 1 6 6 H 1.48500 * 109.46893 * 150.00051 * 3 2 1 7 7 C 1.40032 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.41311 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.40591 * 119.78611 * 179.97438 * 9 7 2 11 11 C 1.38339 * 119.14895 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68479 * 0.02562 * 11 10 9 13 13 C 1.39756 * 119.49013 * 359.97438 * 12 11 10 14 14 N 1.38823 * 119.59060 * 179.97438 * 13 12 11 15 15 S 1.65597 * 120.00713 * 180.02562 * 14 13 12 16 16 O 1.42104 * 104.27334 * 308.92685 * 15 14 13 17 17 O 1.42094 * 104.27798 * 181.07099 * 15 14 13 18 18 C 1.81400 * 104.44891 * 64.99640 * 15 14 13 19 19 C 1.53001 * 109.46608 * 180.02562 * 18 15 14 20 20 C 1.53004 * 109.46638 * 180.02562 * 19 18 15 21 21 H 1.09000 * 109.49194 * 304.96541 * 20 19 18 22 22 C 1.53097 * 109.47989 * 184.94368 * 20 19 18 23 23 C 1.53178 * 109.16320 * 182.40692 * 22 20 19 24 24 C 1.53207 * 109.03992 * 56.98185 * 23 22 20 25 25 C 1.53092 * 109.14859 * 303.02293 * 24 23 22 26 26 O 1.42898 * 109.48206 * 65.00072 * 20 19 18 27 27 N 1.31980 * 120.83110 * 0.25832 * 13 12 11 28 28 H 0.97000 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.42307 * 359.97438 * 10 9 7 30 30 H 1.08004 * 120.65989 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.25832 * 179.97438 * 12 11 10 32 32 H 0.97009 * 119.99493 * 0.02562 * 14 13 12 33 33 H 1.08992 * 109.47185 * 60.00685 * 18 15 14 34 34 H 1.08999 * 109.47209 * 300.00044 * 18 15 14 35 35 H 1.09001 * 109.47510 * 60.00507 * 19 18 15 36 36 H 1.08999 * 109.47626 * 299.99531 * 19 18 15 37 37 H 1.09003 * 109.51867 * 302.31556 * 22 20 19 38 38 H 1.08997 * 109.52106 * 62.49955 * 22 20 19 39 39 H 1.09004 * 109.54044 * 176.84782 * 23 22 20 40 40 H 1.09000 * 109.54126 * 297.02411 * 23 22 20 41 41 H 1.08999 * 109.53319 * 183.11811 * 24 23 22 42 42 H 1.08992 * 109.51748 * 62.92028 * 24 23 22 43 43 H 1.09002 * 109.48343 * 297.61643 * 25 24 23 44 44 H 1.08999 * 109.47546 * 177.59237 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6514 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0819 -4.7945 -0.0011 13 6 -0.7281 -3.5552 -0.0010 14 7 -2.1154 -3.5055 -0.0026 15 16 -2.8917 -2.0428 -0.0032 16 8 -2.2928 -1.3279 1.0690 17 8 -4.2722 -2.3786 0.0208 18 6 -2.4462 -1.2946 -1.5946 19 6 -3.1100 0.0785 -1.7160 20 6 -2.7348 0.7093 -3.0585 21 1 -1.6495 0.7420 -3.1543 22 6 -3.2964 2.1318 -3.1290 23 6 -2.9685 2.7346 -4.4985 24 6 -3.5410 1.8286 -5.5934 25 6 -2.9698 0.4180 -5.4274 26 8 -3.2839 -0.0714 -4.1220 27 7 -0.0359 -2.4315 -0.0051 28 1 -0.4850 0.8401 -0.0004 29 1 3.0886 -3.6553 0.0001 30 1 1.8224 -5.7890 -0.0004 31 1 -0.6576 -5.7082 -0.0019 32 1 -2.6302 -4.3278 -0.0034 33 1 -2.7878 -1.9367 -2.4063 34 1 -1.3637 -1.1808 -1.6522 35 1 -2.7681 0.7206 -0.9043 36 1 -4.1926 -0.0348 -1.6583 37 1 -4.3775 2.1037 -2.9927 38 1 -2.8453 2.7407 -2.3455 39 1 -3.4137 3.7265 -4.5763 40 1 -1.8873 2.8101 -4.6142 41 1 -3.2647 2.2207 -6.5722 42 1 -4.6269 1.7945 -5.5068 43 1 -1.8876 0.4467 -5.5542 44 1 -3.4064 -0.2414 -6.1776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424744924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:18 Heat of formation + Delta-G solvation = -115.398714 kcal Electronic energy + Delta-G solvation = -28904.152412 eV Core-core repulsion = 24947.272772 eV Total energy + Delta-G solvation = -3956.879640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.41716 -40.25689 -37.93393 -36.77828 -36.34353 -35.23595 -34.89925 -34.55392 -32.28405 -31.00867 -30.59738 -27.38994 -26.53380 -24.71041 -23.65467 -23.17970 -22.59377 -21.21222 -20.16935 -19.73021 -18.56450 -17.94111 -17.52771 -17.32076 -16.68239 -16.65542 -16.29954 -16.18460 -15.72973 -15.59698 -15.37779 -14.87821 -14.76999 -14.71653 -14.45066 -13.92530 -13.66705 -13.41724 -13.18197 -13.11743 -13.03713 -12.86232 -12.75539 -12.67821 -12.55627 -12.39634 -12.28879 -12.15648 -12.11696 -11.92029 -11.83013 -11.76833 -11.38015 -11.08837 -10.97533 -10.35526 -9.97758 -9.57791 -8.98202 -8.22182 -6.42692 -0.52168 0.96912 1.21613 1.46501 1.56763 1.57622 1.77418 2.28410 2.79707 2.84444 2.98028 3.52520 3.58254 3.79233 3.82271 3.92614 3.98129 3.98770 4.03644 4.17392 4.25011 4.39026 4.46682 4.49133 4.69894 4.72362 4.80316 4.81033 4.86794 4.93707 4.96403 5.03676 5.05911 5.10409 5.15738 5.18455 5.29378 5.38081 5.50161 5.73188 5.91164 5.96458 6.29657 6.31157 6.34921 6.83255 7.03315 8.07959 8.50683 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009612 B = 0.005234 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.435148 B = 5347.885076 C = 6841.789319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.028 3.972 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.089 0.911 9 C 0.255 3.745 10 C -0.317 4.317 11 C -0.032 4.032 12 C -0.343 4.343 13 C 0.370 3.630 14 N -1.033 6.033 15 S 2.619 3.381 16 O -0.946 6.946 17 O -1.003 7.003 18 C -0.589 4.589 19 C -0.098 4.098 20 C 0.104 3.896 21 H 0.051 0.949 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.150 4.150 25 C 0.050 3.950 26 O -0.398 6.398 27 N -0.542 5.542 28 H 0.279 0.721 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.431 0.569 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 4.431 -10.145 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.484 4.484 8 H 0.107 0.893 9 C 0.130 3.870 10 C -0.340 4.340 11 C -0.056 4.056 12 C -0.370 4.370 13 C 0.131 3.869 14 N -0.782 5.782 15 S 2.716 3.284 16 O -0.936 6.936 17 O -0.994 6.994 18 C -0.722 4.722 19 C -0.137 4.137 20 C 0.045 3.955 21 H 0.069 0.931 22 C -0.191 4.191 23 C -0.160 4.160 24 C -0.188 4.188 25 C -0.027 4.027 26 O -0.317 6.317 27 N -0.264 5.264 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.267 0.733 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.761 5.665 -9.371 12.869 hybrid contribution 1.143 -0.664 -0.340 1.365 sum -5.618 5.000 -9.711 12.283 Atomic orbital electron populations 1.70120 1.07786 1.28877 1.26453 1.26754 0.95833 1.03554 0.93560 0.85392 0.79157 0.77031 0.79360 1.18507 1.19749 1.18656 1.19879 0.94685 0.90022 1.43790 0.89296 1.18529 0.86739 0.93425 0.88284 1.21808 0.99500 0.93473 1.19216 1.21075 0.93330 0.97682 0.93518 1.21031 0.95324 0.95829 1.24830 1.18491 0.83439 0.92173 0.92753 1.53171 1.11866 1.26610 1.86511 1.04615 0.71796 0.73726 0.78275 1.93595 1.76718 1.72116 1.51197 1.93509 1.33680 1.83472 1.88690 1.30177 1.13620 1.08063 1.20335 1.21337 1.00811 0.93358 0.98205 1.21918 0.96656 0.90807 0.86128 0.93142 1.22254 1.02425 0.95141 0.99242 1.21621 1.01190 0.99627 0.93584 1.22168 1.01461 0.95122 1.00046 1.22787 0.99518 0.96210 0.84157 1.87884 1.75930 1.53069 1.14852 1.68012 1.09073 1.24225 1.25127 0.91003 0.87126 0.84596 0.85589 0.73260 0.85228 0.83373 0.88950 0.89717 0.90428 0.90054 0.89760 0.92032 0.89039 0.90929 0.93567 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -34.62 9.13 21.84 0.20 -34.43 16 2 C 0.03 1.34 5.50 85.29 0.47 1.80 16 3 Si 0.97 36.17 29.56 68.60 2.03 38.19 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 7 C -0.45 -22.99 9.14 23.46 0.21 -22.78 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 9 C 0.26 13.32 6.55 40.19 0.26 13.58 16 10 C -0.32 -14.73 9.83 22.87 0.22 -14.51 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.34 -14.27 9.95 22.73 0.23 -14.05 16 13 C 0.37 16.98 7.24 133.40 0.97 17.94 16 14 N -1.03 -40.89 5.74 -55.38 -0.32 -41.20 16 15 S 2.62 106.98 5.09 -56.49 -0.29 106.69 16 16 O -0.95 -46.52 15.94 -127.65 -2.03 -48.55 16 17 O -1.00 -41.81 18.08 -127.65 -2.31 -44.12 16 18 C -0.59 -21.59 5.74 71.98 0.41 -21.17 16 19 C -0.10 -3.13 4.93 30.60 0.15 -2.98 16 20 C 0.10 2.97 2.64 30.63 0.08 3.05 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 C -0.15 -3.43 5.42 30.69 0.17 -3.26 16 23 C -0.12 -2.26 6.03 30.72 0.19 -2.07 16 24 C -0.15 -2.58 6.14 30.69 0.19 -2.39 16 25 C 0.05 1.07 6.84 72.01 0.49 1.56 16 26 O -0.40 -11.44 9.94 -148.98 -1.48 -12.92 16 27 N -0.54 -27.78 4.93 -186.59 -0.92 -28.70 16 28 H 0.28 12.44 8.29 -92.71 -0.77 11.67 16 29 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.43 13.93 8.78 -96.74 -0.85 13.08 16 33 H 0.13 4.32 7.82 -2.39 -0.02 4.30 16 34 H 0.15 6.25 5.74 -2.39 -0.01 6.24 16 35 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.46 368.04 -0.69 -67.15 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: 0.16 Total: 44.22 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 4.27 Total: -46.34 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -1.04 Total: -104.33 kcal Atomic # 8 Polarization: -99.76 SS G_CDS: -5.82 Total: -105.58 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 16 Polarization: 106.98 SS G_CDS: -0.29 Total: 106.69 kcal Total: -66.46 -0.69 -67.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424744924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.249 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds