Wall clock time and date at job start Tue Mar 31 2020 23:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48492 * 109.47095 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47221 * 30.00365 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00121 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21479 * 120.00398 * 179.97438 * 14 13 12 16 16 C 1.48470 * 120.00091 * 359.97438 * 14 13 12 17 17 C 1.39624 * 120.50849 * 179.97438 * 16 14 13 18 18 C 1.38858 * 118.41739 * 179.97438 * 17 16 14 19 19 N 1.32056 * 119.23746 * 0.02562 * 18 17 16 20 20 C 1.32636 * 120.96220 * 0.02562 * 19 18 17 21 21 C 1.48421 * 119.13492 * 179.97438 * 20 19 18 22 22 C 1.39260 * 119.71864 * 359.73023 * 21 20 19 23 23 C 1.38488 * 119.06841 * 179.75097 * 22 21 20 24 24 C 1.38720 * 118.49619 * 0.51057 * 23 22 21 25 25 C 1.38350 * 119.35113 * 359.72902 * 24 23 22 26 26 N 1.31683 * 120.88972 * 0.02562 * 25 24 23 27 27 N 1.32356 * 121.73117 * 359.73800 * 20 19 18 28 28 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 29 29 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 30 30 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 31 31 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 32 32 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 33 33 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 34 34 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 35 35 H 1.08003 * 120.78999 * 359.96441 * 17 16 14 36 36 H 1.08004 * 120.38247 * 179.97438 * 18 17 16 37 37 H 1.08002 * 120.47055 * 359.97438 * 22 21 20 38 38 H 1.08002 * 120.75622 * 180.24071 * 23 22 21 39 39 H 1.08007 * 120.32439 * 179.70444 * 24 23 22 40 40 H 1.08001 * 119.55703 * 179.97438 * 25 24 23 41 41 H 1.09003 * 109.87825 * 241.63649 * 28 13 12 42 42 H 1.09001 * 109.88209 * 120.47703 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6963 -3.9115 -3.5540 16 6 0.1458 -6.0492 -3.1020 17 6 -0.4356 -6.6197 -4.2360 18 6 -0.2361 -7.9736 -4.4708 19 7 0.4914 -8.6753 -3.6209 20 6 1.0303 -8.1054 -2.5514 21 6 1.8402 -8.9326 -1.6225 22 6 2.0176 -10.2892 -1.8822 23 6 2.7801 -11.0472 -1.0094 24 6 3.3312 -10.4239 0.1006 25 6 3.1097 -9.0728 0.2994 26 7 2.3844 -8.3746 -0.5494 27 7 0.8685 -6.8174 -2.2930 28 6 0.4282 -2.6578 -1.2974 29 1 -0.4850 0.8400 0.0004 30 1 -0.2247 -1.8680 1.2334 31 1 3.0948 -3.4670 -0.6886 32 1 2.5461 -3.9997 0.9358 33 1 1.9712 -5.5343 -1.2166 34 1 0.7139 -5.2644 0.0276 35 1 -1.0266 -6.0221 -4.9143 36 1 -0.6715 -8.4476 -5.3382 37 1 1.5698 -10.7431 -2.7539 38 1 2.9386 -12.1008 -1.1866 39 1 3.9269 -10.9880 0.8031 40 1 3.5368 -8.5843 1.1627 41 1 -0.6140 -2.4001 -1.1087 42 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434123371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:03 Heat of formation + Delta-G solvation = 24.511436 kcal Electronic energy + Delta-G solvation = -29032.795184 eV Core-core repulsion = 24978.831303 eV Total energy + Delta-G solvation = -4053.963881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41400 -40.07680 -39.09755 -37.20670 -34.52202 -33.79935 -33.37683 -32.57212 -32.16055 -30.52002 -30.02100 -27.80317 -26.17733 -25.36862 -24.65580 -23.48260 -22.65925 -22.17334 -19.90536 -19.44336 -17.92362 -17.61562 -17.11796 -16.71303 -15.98857 -15.93155 -15.66218 -15.61848 -15.29717 -14.83168 -14.68410 -14.50616 -14.12037 -13.81758 -13.75451 -13.35539 -12.96888 -12.91172 -12.80609 -12.14009 -12.01959 -11.64512 -11.45705 -11.20581 -11.01822 -10.93130 -10.66990 -10.49350 -10.44799 -10.39164 -10.15405 -10.03583 -9.98216 -9.63352 -9.29285 -9.03948 -8.96995 -8.62580 -8.28510 -7.86345 -6.26572 -4.35114 0.05664 0.62820 1.04282 1.26817 2.96618 3.17853 3.22522 3.29904 3.31697 3.34549 3.56050 3.80896 3.98099 4.28606 4.45985 4.53111 4.60356 4.65442 4.79331 4.81283 4.90669 5.01289 5.03432 5.30956 5.45846 5.55101 5.66904 5.79452 5.86860 5.94760 6.00785 6.07551 6.23392 6.37152 6.57333 6.66719 6.71203 6.87735 6.94424 7.02497 7.29486 7.40622 7.64725 7.75772 7.87472 8.03196 8.15222 8.54017 8.69205 9.33700 9.44974 10.80997 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.003253 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.403226 B = 8606.427468 C =10117.465059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.120 4.120 12 C 0.106 3.894 13 N -0.579 5.579 14 C 0.564 3.436 15 O -0.541 6.541 16 C 0.146 3.854 17 C -0.170 4.170 18 C 0.149 3.851 19 N -0.500 5.500 20 C 0.351 3.649 21 C 0.172 3.828 22 C -0.124 4.124 23 C -0.085 4.085 24 C -0.159 4.159 25 C 0.101 3.899 26 N -0.437 5.437 27 N -0.447 5.447 28 C 0.100 3.900 29 H 0.270 0.730 30 H 0.383 0.617 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -21.714 -4.343 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.158 4.158 12 C -0.017 4.017 13 N -0.309 5.309 14 C 0.349 3.651 15 O -0.419 6.419 16 C -0.002 4.002 17 C -0.193 4.193 18 C -0.018 4.018 19 N -0.215 5.215 20 C 0.085 3.915 21 C 0.035 3.965 22 C -0.146 4.146 23 C -0.111 4.111 24 C -0.180 4.180 25 C -0.058 4.058 26 N -0.146 5.146 27 N -0.163 5.163 28 C -0.021 4.021 29 H 0.080 0.920 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.087 0.913 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.705 -21.354 -3.906 22.022 hybrid contribution -0.379 1.062 -0.893 1.438 sum 3.326 -20.293 -4.800 21.116 Atomic orbital electron populations 1.69647 1.05988 1.27917 1.49965 1.25091 0.95061 0.99772 0.93435 0.86396 0.79821 0.82397 0.78265 1.20450 1.20999 1.19664 1.21545 0.93757 0.90090 1.52027 0.91459 1.19500 0.86179 0.92344 0.81245 1.86108 1.53551 1.52600 1.47049 1.22800 0.97493 0.95117 1.00368 1.22667 0.93454 0.94879 0.90651 1.48735 1.47565 1.12897 1.21700 1.17366 0.81347 0.84587 0.81819 1.90768 1.41580 1.60777 1.48817 1.22014 0.91794 0.95457 0.90978 1.23087 1.00379 0.97216 0.98605 1.23246 0.91526 0.90343 0.96671 1.68066 1.09462 1.40448 1.03560 1.20843 0.93230 0.87309 0.90137 1.18675 0.96072 0.89767 0.92023 1.22122 0.98212 0.93563 1.00711 1.21576 0.95321 1.00538 0.93639 1.22367 1.00503 0.96599 0.98490 1.22889 0.94251 0.91132 0.97524 1.67581 1.06213 1.39302 1.01512 1.68816 1.13344 1.05057 1.29112 1.23166 1.02041 0.77368 0.99529 0.91975 0.76587 0.90880 0.90548 0.88393 0.91762 0.81918 0.80265 0.83436 0.84325 0.84399 0.81877 0.91330 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 10.97 55.43 0.61 -23.41 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.21 8.12 -34.44 -0.28 -14.49 16 8 H 0.07 1.76 7.77 -52.49 -0.41 1.35 16 9 C 0.25 6.17 0.86 -89.94 -0.08 6.09 16 10 O -0.58 -15.11 13.09 -35.23 -0.46 -15.57 16 11 C -0.12 -2.56 6.22 -24.59 -0.15 -2.71 16 12 C 0.11 2.13 5.96 -2.53 -0.02 2.12 16 13 N -0.58 -12.74 3.33 -171.40 -0.57 -13.31 16 14 C 0.56 11.76 7.86 -12.05 -0.09 11.67 16 15 O -0.54 -12.42 16.75 5.38 0.09 -12.33 16 16 C 0.15 2.49 6.75 -82.66 -0.56 1.93 16 17 C -0.17 -2.21 9.72 -38.83 -0.38 -2.59 16 18 C 0.15 1.56 11.30 -17.23 -0.19 1.36 16 19 N -0.50 -6.19 9.40 -11.14 -0.10 -6.30 16 20 C 0.35 5.12 7.57 -157.06 -1.19 3.93 16 21 C 0.17 2.27 6.75 -82.95 -0.56 1.71 16 22 C -0.12 -1.23 9.60 -39.11 -0.38 -1.60 16 23 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 24 C -0.16 -1.18 10.11 -39.36 -0.40 -1.58 16 25 C 0.10 1.01 11.18 -17.57 -0.20 0.81 16 26 N -0.44 -5.95 10.02 -9.77 -0.10 -6.05 16 27 N -0.45 -7.49 6.44 -7.71 -0.05 -7.54 16 28 C 0.10 2.49 5.39 -3.07 -0.02 2.47 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.38 10.12 7.17 45.56 0.33 10.44 16 31 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.10 1.87 5.91 -51.93 -0.31 1.56 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.16 1.89 7.73 -52.48 -0.41 1.48 16 36 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.15 1.27 7.50 -52.49 -0.39 0.87 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.07 1.84 8.01 -51.93 -0.42 1.42 16 42 H 0.07 1.85 7.82 -51.93 -0.41 1.45 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.02 360.47 -9.25 -41.27 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -4.10 Total: 12.40 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -4.98 Total: 9.82 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.21 Total: -56.60 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.37 Total: -27.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.02 -9.25 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434123371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.783 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds