Wall clock time and date at job start Tue Mar 31 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48507 * 109.47272 * 270.00204 * 3 2 1 5 5 H 1.48510 * 109.47373 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47242 * 150.00275 * 3 2 1 7 7 C 1.40027 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00339 * 192.10714 * 7 2 1 9 9 C 1.41545 * 119.99830 * 12.10087 * 7 2 1 10 10 C 1.41165 * 120.99845 * 201.12403 * 9 7 2 11 11 C 1.36587 * 119.12670 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.26406 * 359.74403 * 11 10 9 13 13 C 1.32493 * 122.22269 * 0.53393 * 12 11 10 14 14 N 1.39458 * 119.64883 * 179.74618 * 13 12 11 15 15 C 1.34786 * 119.99709 * 6.01383 * 14 13 12 16 16 O 1.21574 * 119.99826 * 355.45547 * 15 14 13 17 17 N 1.34774 * 119.99715 * 175.45870 * 15 14 13 18 18 C 1.46505 * 119.99733 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.46603 * 34.99900 * 18 17 15 20 20 C 1.50694 * 109.47271 * 274.99920 * 18 17 15 21 21 N 1.34775 * 120.00083 * 179.97438 * 20 18 17 22 22 O 1.21287 * 120.00151 * 359.97438 * 20 18 17 23 23 C 1.50698 * 109.46866 * 154.99522 * 18 17 15 24 24 C 1.38238 * 120.00072 * 219.99990 * 23 18 17 25 25 C 1.38230 * 120.00132 * 180.02562 * 24 23 18 26 26 C 1.38234 * 119.99973 * 359.95043 * 25 24 23 27 27 C 1.38231 * 120.00104 * 0.02562 * 26 25 24 28 28 C 1.38233 * 120.00279 * 39.98220 * 23 18 17 29 29 C 1.38644 * 120.70783 * 359.46838 * 13 12 11 30 30 H 0.97000 * 120.00414 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.43773 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.36867 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00529 * 186.01246 * 14 13 12 34 34 H 0.96994 * 120.00394 * 359.97438 * 17 15 14 35 35 H 0.96998 * 119.99892 * 0.02562 * 21 20 18 36 36 H 0.97006 * 119.99909 * 179.97438 * 21 20 18 37 37 H 1.08002 * 119.99794 * 359.97438 * 24 23 18 38 38 H 1.08002 * 120.00364 * 179.97438 * 25 24 23 39 39 H 1.08004 * 120.00117 * 179.72329 * 26 25 24 40 40 H 1.08002 * 120.00530 * 179.97438 * 27 26 25 41 41 H 1.08007 * 119.99868 * 359.97438 * 28 23 18 42 42 H 1.07998 * 120.67041 * 180.27947 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6528 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0696 -1.2231 0.1956 9 6 1.3235 -2.4247 -0.2581 10 6 1.8597 -3.6639 0.1541 11 6 1.1674 -4.8102 -0.1148 12 7 0.0080 -4.7786 -0.7465 13 6 -0.5401 -3.6457 -1.1609 14 7 -1.7646 -3.6752 -1.8277 15 6 -2.4424 -4.8347 -1.9411 16 8 -1.9492 -5.8692 -1.5356 17 7 -3.6668 -4.8471 -2.5042 18 6 -4.4033 -6.1075 -2.6280 19 1 -4.1912 -6.7385 -1.7649 20 6 -3.9758 -6.8176 -3.8866 21 7 -4.5236 -8.0060 -4.2091 22 8 -3.1386 -6.3197 -4.6093 23 6 -5.8816 -5.8215 -2.6900 24 6 -6.7726 -6.6394 -2.0207 25 6 -8.1286 -6.3773 -2.0779 26 6 -8.5936 -5.2967 -2.8038 27 6 -7.7027 -4.4785 -3.4727 28 6 -6.3467 -4.7409 -3.4159 29 6 0.0879 -2.4307 -0.9337 30 1 -0.4851 0.8400 0.0004 31 1 2.8047 -3.7049 0.6751 32 1 1.5738 -5.7603 0.1991 33 1 -2.1286 -2.8613 -2.2098 34 1 -4.0604 -4.0217 -2.8274 35 1 -5.1934 -8.4040 -3.6313 36 1 -4.2487 -8.4629 -5.0194 37 1 -6.4092 -7.4837 -1.4536 38 1 -8.8247 -7.0166 -1.5553 39 1 -9.6535 -5.0945 -2.8522 40 1 -8.0660 -3.6344 -4.0402 41 1 -5.6505 -4.1014 -3.9384 42 1 -0.3615 -1.5073 -1.2678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434735999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:35 Heat of formation + Delta-G solvation = 7.663805 kcal Electronic energy + Delta-G solvation = -28269.961515 eV Core-core repulsion = 24215.267066 eV Total energy + Delta-G solvation = -4054.694449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.70683 -39.37965 -38.79292 -37.82235 -34.87473 -34.17358 -33.75843 -33.66067 -31.46610 -31.15821 -30.41029 -28.59452 -26.84866 -25.95306 -23.12039 -22.41935 -22.07909 -21.74758 -20.40131 -19.94520 -18.39570 -17.81901 -17.53090 -17.31967 -16.64244 -15.99518 -15.61644 -15.36896 -15.06683 -14.68258 -14.52877 -14.44033 -14.15459 -14.10031 -13.76567 -13.63367 -13.40453 -13.00935 -12.79704 -12.61070 -12.55010 -12.22351 -11.51989 -11.40427 -11.35280 -11.15803 -10.85914 -10.41066 -10.24436 -10.05414 -9.75757 -9.72864 -9.58782 -9.35585 -9.28606 -9.16648 -8.82006 -7.93245 -7.67084 -6.94079 -6.70979 -4.58796 0.89995 1.03745 2.58639 2.72520 2.82874 2.90586 3.03366 3.06936 3.27318 3.32034 3.64583 3.86908 3.97211 4.26271 4.51376 4.60574 4.64375 4.74411 4.77598 4.90245 5.07013 5.13571 5.30728 5.55109 5.66820 5.78020 5.99154 6.07263 6.13179 6.15733 6.48109 6.58852 6.61337 6.68487 6.70438 6.86424 6.98016 7.21880 7.22161 7.29271 7.49785 7.55659 7.92926 8.15301 8.20902 8.41351 8.52321 8.78587 8.80631 9.21144 9.80736 10.10268 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002630 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.550321 B =10644.625719 C =11742.596567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.139 3.861 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.355 3.645 14 N -0.663 5.663 15 C 0.701 3.299 16 O -0.531 6.531 17 N -0.731 5.731 18 C 0.193 3.807 19 H 0.123 0.877 20 C 0.511 3.489 21 N -0.854 5.854 22 O -0.522 6.522 23 C -0.092 4.092 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.114 4.114 28 C -0.105 4.105 29 C -0.249 4.249 30 H 0.280 0.720 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.404 0.596 34 H 0.395 0.605 35 H 0.399 0.601 36 H 0.401 0.599 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.046 -7.842 -6.196 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.129 3.871 14 N -0.311 5.311 15 C 0.401 3.599 16 O -0.402 6.402 17 N -0.389 5.389 18 C 0.083 3.917 19 H 0.141 0.859 20 C 0.293 3.707 21 N -0.419 5.419 22 O -0.396 6.396 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.132 4.132 28 C -0.124 4.124 29 C -0.275 4.275 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.227 0.773 36 H 0.231 0.769 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.670 -8.973 -6.297 21.651 hybrid contribution 0.146 1.990 -0.215 2.007 sum -18.525 -6.983 -6.511 20.840 Atomic orbital electron populations 1.69740 1.07600 1.29043 1.35302 1.25976 0.94858 1.01527 0.92024 0.86201 0.80389 0.80138 0.79338 1.19234 1.20229 1.18535 1.19613 0.96382 0.90204 1.41836 0.90061 1.17584 0.90490 0.92269 0.86554 1.21636 1.03576 0.94081 1.11641 1.21455 0.90340 0.96663 0.95016 1.67195 1.13287 1.27492 1.19242 1.17980 0.84938 0.90815 0.93383 1.42448 1.20500 1.09841 1.58264 1.15942 0.80134 0.84813 0.79056 1.90995 1.67008 1.30460 1.51714 1.44835 1.18215 1.08723 1.67093 1.19312 0.87479 0.87637 0.97302 0.85900 1.21038 0.80932 0.81378 0.87365 1.43768 1.45818 1.23011 1.29257 1.90775 1.31332 1.65937 1.51547 1.19639 0.93040 0.97192 0.99401 1.21030 0.93140 0.99556 0.98695 1.21145 0.95276 0.97782 0.99148 1.21238 0.99845 0.95161 0.97122 1.21163 0.92965 0.99657 0.99405 1.21022 0.96043 0.96956 0.98347 1.21781 1.00699 0.95591 1.09411 0.90857 0.88122 0.86122 0.76131 0.76961 0.77325 0.76853 0.85318 0.85586 0.85869 0.85651 0.85755 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.56 10.50 55.55 0.58 -18.98 16 2 C 0.07 1.81 5.31 -17.35 -0.09 1.72 16 3 Si 0.92 18.16 29.58 -169.99 -5.03 13.13 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.73 9.15 -37.65 -0.34 -12.07 16 8 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 9 C 0.14 3.76 5.65 -106.55 -0.60 3.16 16 10 C -0.29 -7.22 9.85 -39.07 -0.38 -7.61 16 11 C 0.12 2.99 11.10 -18.04 -0.20 2.78 16 12 N -0.55 -14.85 7.86 -12.75 -0.10 -14.95 16 13 C 0.35 9.05 7.42 -154.68 -1.15 7.90 16 14 N -0.66 -14.04 5.40 -15.86 -0.09 -14.12 16 15 C 0.70 14.52 8.35 -86.91 -0.73 13.79 16 16 O -0.53 -13.10 14.26 5.30 0.08 -13.02 16 17 N -0.73 -11.13 4.56 -60.96 -0.28 -11.41 16 18 C 0.19 2.48 2.58 -70.24 -0.18 2.30 16 19 H 0.12 1.64 7.44 -51.93 -0.39 1.25 16 20 C 0.51 7.14 7.44 -10.99 -0.08 7.05 16 21 N -0.85 -7.79 8.77 31.22 0.27 -7.51 16 22 O -0.52 -9.86 17.16 5.55 0.10 -9.77 16 23 C -0.09 -0.88 4.74 -104.62 -0.50 -1.38 16 24 C -0.11 -0.81 9.51 -39.58 -0.38 -1.18 16 25 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 26 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 27 C -0.11 -0.87 10.05 -39.59 -0.40 -1.27 16 28 C -0.11 -0.97 9.05 -39.58 -0.36 -1.32 16 29 C -0.25 -6.52 8.67 -38.45 -0.33 -6.86 16 30 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 31 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 32 H 0.12 2.66 8.06 -52.49 -0.42 2.23 16 33 H 0.40 7.08 8.72 -40.82 -0.36 6.73 16 34 H 0.40 4.95 6.89 -40.82 -0.28 4.67 16 35 H 0.40 2.39 8.56 -40.82 -0.35 2.04 16 36 H 0.40 3.24 8.93 -40.82 -0.36 2.88 16 37 H 0.13 0.74 8.04 -52.49 -0.42 0.32 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.12 1.11 6.92 -52.48 -0.36 0.75 16 42 H 0.14 3.60 5.81 -52.49 -0.30 3.29 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -36.84 366.13 -9.95 -46.80 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -4.49 Total: 19.66 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -6.52 Total: 4.66 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 0.39 Total: -66.98 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.84 -9.95 -46.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.460 kcal (2) G-P(sol) polarization free energy of solvation -36.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds